Wall clock time and date at job start Mon Mar 30 2020 01:21:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46903 * 109.46825 * 2 1 4 4 C 1.46901 * 111.00026 * 199.51664 * 3 2 1 5 5 C 1.50702 * 109.47024 * 66.04504 * 4 3 2 6 6 H 1.07999 * 119.99964 * 0.02562 * 5 4 3 7 7 C 1.37874 * 119.99927 * 179.97438 * 5 4 3 8 8 N 1.31515 * 119.99878 * 359.97438 * 7 5 4 9 9 Si 1.86794 * 120.00130 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47372 * 89.99825 * 9 7 5 11 11 H 1.48498 * 109.47393 * 209.99987 * 9 7 5 12 12 H 1.48505 * 109.47063 * 330.00169 * 9 7 5 13 13 C 1.39065 * 110.99724 * 75.56210 * 3 2 1 14 14 N 1.32474 * 119.67729 * 59.22488 * 13 3 2 15 15 C 1.32326 * 121.56657 * 180.28585 * 14 13 3 16 16 O 1.35693 * 119.63312 * 179.74267 * 15 14 13 17 17 C 1.42894 * 116.99446 * 359.97438 * 16 15 14 18 18 C 1.38760 * 120.74036 * 359.72215 * 15 14 13 19 19 C 1.38617 * 119.28496 * 0.02562 * 18 15 14 20 20 C 1.38566 * 118.55458 * 359.97438 * 19 18 15 21 21 Cl 1.73597 * 120.39367 * 179.97438 * 20 19 18 22 22 H 1.08996 * 109.47482 * 304.86612 * 1 2 3 23 23 H 1.09001 * 109.47068 * 64.87139 * 1 2 3 24 24 H 1.09005 * 109.46849 * 184.86499 * 1 2 3 25 25 H 1.08996 * 109.47350 * 240.00154 * 2 1 3 26 26 H 1.09000 * 109.47381 * 119.99565 * 2 1 3 27 27 H 1.08998 * 109.46762 * 186.04912 * 4 3 2 28 28 H 1.08998 * 109.47226 * 306.04412 * 4 3 2 29 29 H 0.96997 * 119.99833 * 179.97438 * 8 7 5 30 30 H 1.09002 * 109.47482 * 299.99542 * 17 16 15 31 31 H 1.09004 * 109.47864 * 60.00040 * 17 16 15 32 32 H 1.09003 * 109.47325 * 179.97438 * 17 16 15 33 33 H 1.07995 * 120.35449 * 180.02562 * 18 15 14 34 34 H 1.07994 * 120.72044 * 179.97438 * 19 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4138 1.4506 -0.4582 5 6 3.4858 1.0448 -1.9078 6 1 2.5858 0.7666 -2.4359 7 6 4.7004 1.0299 -2.5599 8 7 5.7961 1.3702 -1.9171 9 14 4.7896 0.5277 -4.3569 10 1 4.6244 1.7282 -5.2152 11 1 6.1076 -0.0992 -4.6309 12 1 3.7075 -0.4453 -4.6532 13 6 1.8805 1.9627 1.2573 14 7 2.4849 1.4152 2.3012 15 6 2.3735 1.9303 3.5150 16 8 3.0053 1.3342 4.5574 17 6 3.7675 0.1606 4.2686 18 6 1.6180 3.0735 3.7337 19 6 0.9755 3.6766 2.6637 20 6 1.1122 3.1124 1.4055 21 17 0.3276 3.8279 0.0322 22 1 -0.3634 0.5874 0.8431 23 1 -0.3633 0.4364 -0.9304 24 1 -0.3633 -1.0240 0.0872 25 1 1.8934 -0.5138 -0.8899 26 1 1.8934 -0.5138 0.8900 27 1 3.7852 2.4693 -0.3470 28 1 4.0248 0.7740 0.1393 29 1 6.6507 1.3594 -2.3759 30 1 3.1135 -0.6029 3.8473 31 1 4.5514 0.4037 3.5513 32 1 4.2196 -0.2143 5.1869 33 1 1.5316 3.4889 4.7268 34 1 0.3812 4.5668 2.8076 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166591962.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:12 Heat of formation + Delta-G solvation = 2.681288 kcal Electronic energy + Delta-G solvation = -18890.080285 eV Core-core repulsion = 15849.798460 eV Total energy + Delta-G solvation = -3040.281824 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.088 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.56131 -38.27613 -36.30368 -35.84026 -32.72660 -31.95353 -30.47221 -29.43338 -27.27282 -26.13407 -23.29757 -22.65371 -22.46553 -20.44725 -18.09654 -16.79210 -16.40031 -16.21317 -15.90180 -15.12224 -14.76381 -14.39084 -14.09973 -13.45130 -13.09776 -12.94364 -12.72480 -12.35775 -12.17885 -11.75503 -11.72601 -11.36075 -11.07099 -10.86456 -10.67797 -10.64114 -10.47618 -10.29868 -10.04431 -9.59449 -9.50824 -9.19246 -8.49421 -7.99315 -7.67006 -6.05693 -4.07504 1.26714 1.35193 2.57074 3.24618 3.31573 3.37469 3.40660 3.85311 4.20978 4.46670 4.72709 5.11909 5.17369 5.30027 5.40309 5.41946 5.48016 5.74306 5.76402 5.84570 5.93457 6.03892 6.09145 6.34851 6.42136 6.64537 6.76616 7.15017 7.24667 7.36852 7.75795 7.90790 8.05790 8.09044 8.45805 8.98603 9.55982 11.05184 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.017316 B = 0.006848 C = 0.005807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1616.598447 B = 4087.739395 C = 4820.252602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.059 3.941 3 N -0.483 5.483 4 C 0.206 3.794 5 C -0.509 4.509 6 H 0.067 0.933 7 C 0.057 3.943 8 N -0.896 5.896 9 Si 0.900 3.100 10 H -0.280 1.280 11 H -0.287 1.287 12 H -0.273 1.273 13 C 0.374 3.626 14 N -0.550 5.550 15 C 0.329 3.671 16 O -0.312 6.312 17 C 0.041 3.959 18 C -0.201 4.201 19 C -0.036 4.036 20 C -0.105 4.105 21 Cl -0.041 7.041 22 H 0.040 0.960 23 H 0.061 0.939 24 H 0.049 0.951 25 H 0.094 0.906 26 H 0.037 0.963 27 H 0.028 0.972 28 H 0.007 0.993 29 H 0.262 0.738 30 H 0.058 0.942 31 H 0.062 0.938 32 H 0.093 0.907 33 H 0.144 0.856 34 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.037 1.187 10.724 14.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.067 4.067 3 N -0.207 5.207 4 C 0.083 3.917 5 C -0.547 4.547 6 H 0.085 0.915 7 C -0.144 4.144 8 N -0.535 5.535 9 Si 0.728 3.272 10 H -0.206 1.206 11 H -0.213 1.213 12 H -0.198 1.198 13 C 0.145 3.855 14 N -0.278 5.278 15 C 0.149 3.851 16 O -0.219 6.219 17 C -0.055 4.055 18 C -0.222 4.222 19 C -0.062 4.062 20 C -0.136 4.136 21 Cl -0.013 7.013 22 H 0.059 0.941 23 H 0.080 0.920 24 H 0.068 0.932 25 H 0.113 0.887 26 H 0.055 0.945 27 H 0.046 0.954 28 H 0.024 0.976 29 H 0.071 0.929 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.111 0.889 33 H 0.161 0.839 34 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -8.654 0.829 10.391 13.548 hybrid contribution 0.343 -0.030 -0.532 0.634 sum -8.311 0.800 9.859 12.919 Atomic orbital electron populations 1.21770 0.96290 1.00166 1.01808 1.22051 0.94267 0.88165 1.02261 1.60630 1.26656 1.18928 1.14523 1.19748 0.78982 0.97338 0.95668 1.21090 0.93514 1.45147 0.94961 0.91495 1.24968 0.95531 0.95470 0.98462 1.69969 0.98504 1.48353 1.36681 0.86467 0.77265 0.78743 0.84756 1.20587 1.21338 1.19761 1.19774 0.87353 0.89572 0.88826 1.67726 1.25112 1.35603 0.99330 1.19766 0.90009 0.89894 0.85468 1.86184 1.62293 1.42378 1.31004 1.22846 0.95254 0.85215 1.02155 1.20844 1.03400 0.97194 1.00777 1.21198 0.96567 0.98650 0.89802 1.21483 1.03822 0.98335 0.89977 1.98347 1.78361 1.81964 1.42595 0.94080 0.91957 0.93155 0.88726 0.94508 0.95376 0.97554 0.92861 0.92371 0.91879 0.88873 0.83854 0.83417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.34 10.07 37.16 0.37 -1.97 16 2 C 0.06 1.18 5.49 -3.82 -0.02 1.15 16 3 N -0.48 -10.58 3.81 -174.54 -0.66 -11.25 16 4 C 0.21 5.40 4.53 -4.97 -0.02 5.37 16 5 C -0.51 -14.06 8.23 -34.44 -0.28 -14.34 16 6 H 0.07 1.82 7.31 -52.49 -0.38 1.43 16 7 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 8 N -0.90 -26.50 13.29 55.43 0.74 -25.76 16 9 Si 0.90 21.48 29.54 -169.99 -5.02 16.46 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 12 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 13 C 0.37 7.46 4.55 -154.92 -0.71 6.76 16 14 N -0.55 -10.68 8.29 -12.48 -0.10 -10.78 16 15 C 0.33 5.52 7.48 -17.15 -0.13 5.39 16 16 O -0.31 -4.77 10.47 -18.78 -0.20 -4.97 16 17 C 0.04 0.54 10.38 101.05 1.05 1.59 16 18 C -0.20 -2.82 10.03 -39.25 -0.39 -3.21 16 19 C -0.04 -0.50 9.96 -39.32 -0.39 -0.89 16 20 C -0.11 -1.83 6.36 -39.15 -0.25 -2.08 16 21 Cl -0.04 -0.70 28.46 -51.86 -1.48 -2.17 16 22 H 0.04 0.67 7.60 -51.93 -0.39 0.28 16 23 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 24 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.09 2.00 6.58 -51.93 -0.34 1.66 16 26 H 0.04 0.73 7.41 -51.93 -0.38 0.35 16 27 H 0.03 0.81 8.06 -51.93 -0.42 0.39 16 28 H 0.01 0.19 8.12 -51.93 -0.42 -0.24 16 29 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 30 H 0.06 0.79 8.10 -51.93 -0.42 0.37 16 31 H 0.06 0.95 8.10 -51.93 -0.42 0.53 16 32 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.14 1.56 8.06 -52.49 -0.42 1.13 16 34 H 0.15 1.54 8.06 -52.49 -0.42 1.12 16 LS Contribution 307.86 15.07 4.64 4.64 Total: -1.00 -30.33 307.86 -7.39 -37.72 By element: Atomic # 1 Polarization: 1.26 SS G_CDS: -4.43 Total: -3.18 kcal Atomic # 6 Polarization: 0.17 SS G_CDS: -0.87 Total: -0.70 kcal Atomic # 7 Polarization: -47.76 SS G_CDS: -0.03 Total: -47.79 kcal Atomic # 8 Polarization: -4.77 SS G_CDS: -0.20 Total: -4.97 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 17 Polarization: -0.70 SS G_CDS: -1.48 Total: -2.17 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -30.33 -7.39 -37.72 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166591962.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.397 kcal (2) G-P(sol) polarization free energy of solvation -30.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.716 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds