Wall clock time and date at job start Mon Mar 30 2020 01:21:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46903 * 109.46825 * 2 1 4 4 C 1.46901 * 111.00026 * 199.51664 * 3 2 1 5 5 C 1.50702 * 109.47024 * 66.04504 * 4 3 2 6 6 H 1.07999 * 119.99964 * 0.02562 * 5 4 3 7 7 C 1.37874 * 119.99927 * 179.97438 * 5 4 3 8 8 N 1.31515 * 119.99878 * 359.97438 * 7 5 4 9 9 Si 1.86794 * 120.00130 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47372 * 89.99825 * 9 7 5 11 11 H 1.48498 * 109.47393 * 209.99987 * 9 7 5 12 12 H 1.48505 * 109.47063 * 330.00169 * 9 7 5 13 13 C 1.39065 * 110.99724 * 75.56210 * 3 2 1 14 14 N 1.32474 * 119.67729 * 59.22488 * 13 3 2 15 15 C 1.32326 * 121.56657 * 180.28585 * 14 13 3 16 16 O 1.35693 * 119.63312 * 179.74267 * 15 14 13 17 17 C 1.42894 * 116.99446 * 359.97438 * 16 15 14 18 18 C 1.38760 * 120.74036 * 359.72215 * 15 14 13 19 19 C 1.38617 * 119.28496 * 0.02562 * 18 15 14 20 20 C 1.38566 * 118.55458 * 359.97438 * 19 18 15 21 21 Cl 1.73597 * 120.39367 * 179.97438 * 20 19 18 22 22 H 1.08996 * 109.47482 * 304.86612 * 1 2 3 23 23 H 1.09001 * 109.47068 * 64.87139 * 1 2 3 24 24 H 1.09005 * 109.46849 * 184.86499 * 1 2 3 25 25 H 1.08996 * 109.47350 * 240.00154 * 2 1 3 26 26 H 1.09000 * 109.47381 * 119.99565 * 2 1 3 27 27 H 1.08998 * 109.46762 * 186.04912 * 4 3 2 28 28 H 1.08998 * 109.47226 * 306.04412 * 4 3 2 29 29 H 0.96997 * 119.99833 * 179.97438 * 8 7 5 30 30 H 1.09002 * 109.47482 * 299.99542 * 17 16 15 31 31 H 1.09004 * 109.47864 * 60.00040 * 17 16 15 32 32 H 1.09003 * 109.47325 * 179.97438 * 17 16 15 33 33 H 1.07995 * 120.35449 * 180.02562 * 18 15 14 34 34 H 1.07994 * 120.72044 * 179.97438 * 19 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4138 1.4506 -0.4582 5 6 3.4858 1.0448 -1.9078 6 1 2.5858 0.7666 -2.4359 7 6 4.7004 1.0299 -2.5599 8 7 5.7961 1.3702 -1.9171 9 14 4.7896 0.5277 -4.3569 10 1 4.6244 1.7282 -5.2152 11 1 6.1076 -0.0992 -4.6309 12 1 3.7075 -0.4453 -4.6532 13 6 1.8805 1.9627 1.2573 14 7 2.4849 1.4152 2.3012 15 6 2.3735 1.9303 3.5150 16 8 3.0053 1.3342 4.5574 17 6 3.7675 0.1606 4.2686 18 6 1.6180 3.0735 3.7337 19 6 0.9755 3.6766 2.6637 20 6 1.1122 3.1124 1.4055 21 17 0.3276 3.8279 0.0322 22 1 -0.3634 0.5874 0.8431 23 1 -0.3633 0.4364 -0.9304 24 1 -0.3633 -1.0240 0.0872 25 1 1.8934 -0.5138 -0.8899 26 1 1.8934 -0.5138 0.8900 27 1 3.7852 2.4693 -0.3470 28 1 4.0248 0.7740 0.1393 29 1 6.6507 1.3594 -2.3759 30 1 3.1135 -0.6029 3.8473 31 1 4.5514 0.4037 3.5513 32 1 4.2196 -0.2143 5.1869 33 1 1.5316 3.4889 4.7268 34 1 0.3812 4.5668 2.8076 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166591962.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:12 Heat of formation + Delta-G solvation = -17.552317 kcal Electronic energy + Delta-G solvation = -18890.957679 eV Core-core repulsion = 15849.798460 eV Total energy + Delta-G solvation = -3041.159219 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.088 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.89044 -39.61914 -37.79550 -37.17945 -34.81211 -33.28486 -31.92062 -31.00686 -28.77233 -27.71646 -24.75101 -24.36944 -23.91476 -22.00979 -19.42379 -18.46255 -18.15462 -17.46569 -17.25901 -16.80229 -16.38508 -15.93818 -15.54762 -14.80192 -14.45941 -14.40250 -14.26252 -14.11967 -13.77576 -13.05146 -12.93660 -12.87758 -12.77363 -12.70389 -12.44680 -12.10503 -11.99426 -11.87054 -11.72895 -11.45998 -10.81493 -10.74868 -10.64553 -9.47695 -9.29102 -8.22431 -6.32913 -0.06526 0.12007 1.25093 1.41520 1.43390 1.54357 2.07392 2.37937 2.54264 2.80706 3.11323 3.38728 3.91580 4.04771 4.08736 4.28492 4.33086 4.39531 4.48273 4.61265 4.68635 4.71174 4.87066 4.93390 5.01593 5.09950 5.19103 5.24343 5.37956 5.62962 5.94225 6.06592 6.08339 6.60136 6.72109 6.81169 7.36056 8.89270 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.017316 B = 0.006848 C = 0.005807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1616.598447 B = 4087.739395 C = 4820.252602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.060 3.940 3 N -0.482 5.482 4 C 0.231 3.769 5 C -0.521 4.521 6 H 0.070 0.930 7 C 0.003 3.997 8 N -0.934 5.934 9 Si 0.972 3.028 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.261 1.261 13 C 0.335 3.665 14 N -0.578 5.578 15 C 0.309 3.691 16 O -0.310 6.310 17 C 0.042 3.958 18 C -0.179 4.179 19 C -0.022 4.022 20 C -0.114 4.114 21 Cl -0.042 7.042 22 H 0.042 0.958 23 H 0.060 0.940 24 H 0.076 0.924 25 H 0.074 0.926 26 H 0.028 0.972 27 H -0.009 1.009 28 H -0.030 1.030 29 H 0.264 0.736 30 H 0.050 0.950 31 H 0.036 0.964 32 H 0.133 0.867 33 H 0.185 0.815 34 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.661 1.703 11.482 15.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.066 4.066 3 N -0.206 5.206 4 C 0.107 3.893 5 C -0.559 4.559 6 H 0.088 0.912 7 C -0.195 4.195 8 N -0.574 5.574 9 Si 0.796 3.204 10 H -0.199 1.199 11 H -0.208 1.208 12 H -0.185 1.185 13 C 0.107 3.893 14 N -0.306 5.306 15 C 0.129 3.871 16 O -0.217 6.217 17 C -0.053 4.053 18 C -0.199 4.199 19 C -0.048 4.048 20 C -0.145 4.145 21 Cl -0.013 7.013 22 H 0.061 0.939 23 H 0.079 0.921 24 H 0.095 0.905 25 H 0.093 0.907 26 H 0.046 0.954 27 H 0.009 0.991 28 H -0.013 1.013 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.055 0.945 32 H 0.151 0.849 33 H 0.203 0.797 34 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -10.309 1.342 11.161 15.252 hybrid contribution 0.847 -0.165 -0.601 1.052 sum -9.462 1.177 10.560 14.227 Atomic orbital electron populations 1.21635 0.93199 1.01885 1.01746 1.22049 0.96665 0.87143 1.00768 1.60494 1.23423 1.19955 1.16756 1.19190 0.81365 0.93856 0.94916 1.21380 0.93806 1.45034 0.95671 0.91217 1.25923 0.95020 0.95216 1.03326 1.70111 0.99154 1.49407 1.38747 0.85341 0.77628 0.78678 0.78730 1.19903 1.20848 1.18455 1.19756 0.90009 0.91282 0.88224 1.67526 1.25899 1.36808 1.00395 1.20238 0.90892 0.91048 0.84940 1.86195 1.62279 1.42822 1.30363 1.22951 0.94267 0.84529 1.03541 1.21355 1.00709 0.95260 1.02599 1.21690 0.95835 0.99253 0.87975 1.21664 1.03735 0.97661 0.91405 1.98341 1.78195 1.81729 1.43033 0.93924 0.92057 0.90521 0.90745 0.95380 0.99117 1.01267 0.92687 0.93079 0.94491 0.84889 0.79733 0.79068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.09 10.07 71.98 0.72 -3.36 16 2 C 0.06 2.47 5.49 86.30 0.47 2.94 16 3 N -0.48 -21.92 3.81 -706.12 -2.69 -24.61 16 4 C 0.23 12.86 4.53 85.56 0.39 13.25 16 5 C -0.52 -29.76 8.23 25.60 0.21 -29.55 16 6 H 0.07 3.86 7.31 -2.91 -0.02 3.84 16 7 C 0.00 0.19 5.46 84.65 0.46 0.66 16 8 N -0.93 -57.08 13.29 21.45 0.28 -56.80 16 9 Si 0.97 44.50 29.54 68.60 2.03 46.53 16 10 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 11 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 12 H -0.26 -11.32 7.11 99.48 0.71 -10.62 16 13 C 0.33 13.63 4.55 133.00 0.61 14.23 16 14 N -0.58 -22.95 8.29 -306.20 -2.54 -25.49 16 15 C 0.31 10.08 7.48 84.74 0.63 10.71 16 16 O -0.31 -9.12 10.47 -90.13 -0.94 -10.06 16 17 C 0.04 1.12 10.38 113.37 1.18 2.30 16 18 C -0.18 -4.43 10.03 22.49 0.23 -4.20 16 19 C -0.02 -0.54 9.96 22.44 0.22 -0.32 16 20 C -0.11 -3.84 6.36 22.55 0.14 -3.70 16 21 Cl -0.04 -1.37 28.46 -2.72 -0.08 -1.45 16 22 H 0.04 1.35 7.60 -2.39 -0.02 1.33 16 23 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 24 H 0.08 2.04 8.14 -2.38 -0.02 2.02 16 25 H 0.07 3.28 6.58 -2.39 -0.02 3.26 16 26 H 0.03 1.17 7.41 -2.39 -0.02 1.15 16 27 H -0.01 -0.57 8.06 -2.39 -0.02 -0.59 16 28 H -0.03 -1.87 8.12 -2.39 -0.02 -1.89 16 29 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 30 H 0.05 1.42 8.10 -2.39 -0.02 1.40 16 31 H 0.04 1.17 8.10 -2.39 -0.02 1.15 16 32 H 0.13 2.42 8.14 -2.39 -0.02 2.40 16 33 H 0.19 3.05 8.06 -2.91 -0.02 3.03 16 34 H 0.19 3.04 8.06 -2.91 -0.02 3.02 16 Total: -1.00 -68.94 307.86 2.42 -66.51 By element: Atomic # 1 Polarization: 1.31 SS G_CDS: 1.10 Total: 2.40 kcal Atomic # 6 Polarization: -2.31 SS G_CDS: 5.27 Total: 2.96 kcal Atomic # 7 Polarization: -101.96 SS G_CDS: -4.94 Total: -106.90 kcal Atomic # 8 Polarization: -9.12 SS G_CDS: -0.94 Total: -10.06 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Atomic # 17 Polarization: -1.37 SS G_CDS: -0.08 Total: -1.45 kcal Total: -68.94 2.42 -66.51 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166591962.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.959 kcal (2) G-P(sol) polarization free energy of solvation -68.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds