Wall clock time and date at job start Mon Mar 30 2020 01:21:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46895 * 109.47297 * 2 1 4 4 C 1.46896 * 111.00071 * 291.49453 * 3 2 1 5 5 C 1.50699 * 109.47227 * 288.64408 * 4 3 2 6 6 H 1.07991 * 119.99948 * 355.07605 * 5 4 3 7 7 C 1.37877 * 119.99625 * 175.07018 * 5 4 3 8 8 N 1.31515 * 120.00246 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 119.99688 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47030 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47166 * 119.99668 * 9 7 5 12 12 H 1.48497 * 109.47050 * 240.00041 * 9 7 5 13 13 C 1.39315 * 110.99825 * 55.45052 * 3 2 1 14 14 N 1.32283 * 119.72025 * 236.04256 * 13 3 2 15 15 C 1.32023 * 121.68888 * 179.97438 * 14 13 3 16 16 C 1.38116 * 120.94045 * 0.02562 * 15 14 13 17 17 Cl 1.73594 * 120.33062 * 180.02562 * 16 15 14 18 18 C 1.38938 * 119.34050 * 0.02562 * 16 15 14 19 19 C 1.38706 * 118.44966 * 359.97438 * 18 16 15 20 20 O 1.36012 * 120.49052 * 180.02562 * 19 18 16 21 21 C 1.42909 * 116.99934 * 0.02562 * 20 19 18 22 22 H 1.09001 * 109.47004 * 304.44535 * 1 2 3 23 23 H 1.09000 * 109.47233 * 64.44462 * 1 2 3 24 24 H 1.08999 * 109.47459 * 184.44177 * 1 2 3 25 25 H 1.08999 * 109.47010 * 239.99578 * 2 1 3 26 26 H 1.09006 * 109.46812 * 120.00113 * 2 1 3 27 27 H 1.09006 * 109.47090 * 48.65097 * 4 3 2 28 28 H 1.09008 * 109.46710 * 168.64371 * 4 3 2 29 29 H 0.97002 * 119.99622 * 179.97438 * 8 7 5 30 30 H 1.08001 * 119.52982 * 180.27697 * 15 14 13 31 31 H 1.08000 * 120.77646 * 179.97438 * 18 16 15 32 32 H 1.08995 * 109.46741 * 300.00205 * 21 20 19 33 33 H 1.09004 * 109.46938 * 59.99569 * 21 20 19 34 34 H 1.08995 * 109.46779 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.7214 2.0488 -1.2760 5 6 2.6028 1.4783 -2.3571 6 1 3.3676 0.7582 -2.1064 7 6 2.4327 1.8757 -3.6664 8 7 1.5009 2.7522 -3.9718 9 14 3.5247 1.1681 -5.0066 10 1 4.4865 0.2089 -4.4064 11 1 2.6850 0.4654 -6.0098 12 1 4.2712 2.2677 -5.6689 13 6 1.4907 2.1015 1.0712 14 7 0.8244 3.2218 0.8457 15 6 0.3065 3.9311 1.8315 16 6 0.4427 3.5267 3.1451 17 17 -0.2453 4.4712 4.4289 18 6 1.1359 2.3565 3.4288 19 6 1.6691 1.6319 2.3731 20 8 2.3549 0.4801 2.6034 21 6 2.4915 0.0674 3.9647 22 1 -0.3633 0.5813 0.8475 23 1 -0.3634 0.4433 -0.9271 24 1 -0.3634 -1.0245 0.0796 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5139 0.8900 27 1 0.6755 1.8844 -1.5353 28 1 1.9085 3.1185 -1.1814 29 1 1.3816 3.0320 -4.8929 30 1 -0.2349 4.8383 1.6072 31 1 1.2567 2.0190 4.4476 32 1 3.0174 0.8389 4.5271 33 1 1.5035 -0.0882 4.3981 34 1 3.0573 -0.8632 4.0072 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166593388.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:03 Heat of formation + Delta-G solvation = 7.983953 kcal Electronic energy + Delta-G solvation = -18918.784014 eV Core-core repulsion = 15878.732130 eV Total energy + Delta-G solvation = -3040.051883 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.088 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.74434 -38.06508 -37.14195 -36.12544 -32.64192 -31.64814 -30.28744 -29.18326 -27.35808 -26.49470 -23.54163 -23.01793 -22.24364 -20.19245 -18.06581 -17.09915 -16.44610 -16.04875 -15.86997 -15.14086 -14.75100 -14.50573 -14.10560 -13.73843 -13.41328 -13.33160 -12.60765 -12.47300 -11.99844 -11.88741 -11.61719 -11.46001 -11.24963 -11.10950 -11.09349 -10.72333 -10.59693 -10.19293 -10.03923 -9.49465 -9.29420 -9.17344 -8.64605 -8.36123 -7.13117 -6.00704 -4.03217 1.24723 1.41248 2.17771 3.27225 3.31985 3.39522 3.44029 3.86799 4.29265 4.51375 4.78132 4.88995 4.97997 5.10938 5.20298 5.34227 5.35227 5.43944 5.71301 5.76402 5.82733 5.95394 6.03229 6.28114 6.45006 6.56571 6.78144 7.06114 7.32207 7.50137 7.72809 7.89595 8.10912 8.36417 8.50254 9.04557 9.60003 11.09422 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.024531 B = 0.005427 C = 0.004762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.128589 B = 5158.507364 C = 5878.999164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.061 3.939 3 N -0.462 5.462 4 C 0.194 3.806 5 C -0.516 4.516 6 H 0.064 0.936 7 C 0.059 3.941 8 N -0.892 5.892 9 Si 0.897 3.103 10 H -0.272 1.272 11 H -0.285 1.285 12 H -0.284 1.284 13 C 0.328 3.672 14 N -0.465 5.465 15 C 0.109 3.891 16 C -0.102 4.102 17 Cl -0.074 7.074 18 C -0.144 4.144 19 C 0.061 3.939 20 O -0.291 6.291 21 C 0.022 3.978 22 H 0.041 0.959 23 H 0.068 0.932 24 H 0.055 0.945 25 H 0.095 0.905 26 H 0.080 0.920 27 H 0.019 0.981 28 H 0.046 0.954 29 H 0.261 0.739 30 H 0.161 0.839 31 H 0.142 0.858 32 H 0.053 0.947 33 H 0.051 0.949 34 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.485 -2.967 16.518 16.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.065 4.065 3 N -0.176 5.176 4 C 0.071 3.929 5 C -0.555 4.555 6 H 0.082 0.918 7 C -0.143 4.143 8 N -0.531 5.531 9 Si 0.724 3.276 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.210 1.210 13 C 0.092 3.908 14 N -0.180 5.180 15 C -0.049 4.049 16 C -0.133 4.133 17 Cl -0.046 7.046 18 C -0.170 4.170 19 C 0.010 3.990 20 O -0.203 6.203 21 C -0.074 4.074 22 H 0.060 0.940 23 H 0.087 0.913 24 H 0.074 0.926 25 H 0.114 0.886 26 H 0.098 0.902 27 H 0.037 0.963 28 H 0.064 0.936 29 H 0.071 0.929 30 H 0.178 0.822 31 H 0.160 0.840 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -2.069 -2.729 15.448 15.823 hybrid contribution -0.162 -0.262 0.453 0.548 sum -2.231 -2.991 15.902 16.334 Atomic orbital electron populations 1.22404 0.97985 1.01288 1.02233 1.22201 0.92623 0.87955 1.03698 1.59362 1.50488 1.03130 1.04642 1.19880 0.96441 0.95306 0.81257 1.21201 1.17559 1.25429 0.91270 0.91829 1.24947 0.95548 0.95223 0.98580 1.69990 1.32531 1.31748 1.18858 0.86464 0.80466 0.78938 0.81692 1.19651 1.21082 1.21016 1.19895 0.90035 0.91363 0.89515 1.68209 1.09374 1.07050 1.33381 1.22514 0.97297 0.99113 0.85990 1.21547 1.05297 0.96251 0.90196 1.98332 1.83774 1.71997 1.50459 1.21256 1.01132 0.95390 0.99261 1.19483 0.97761 0.88867 0.92879 1.86301 1.70107 1.36598 1.27326 1.23078 1.01404 1.00814 0.82082 0.94037 0.91297 0.92555 0.88642 0.90178 0.96328 0.93554 0.92937 0.82192 0.83990 0.92882 0.93005 0.88163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.23 9.37 37.16 0.35 -2.89 16 2 C 0.06 1.18 5.57 -3.83 -0.02 1.15 16 3 N -0.46 -10.31 4.63 -174.36 -0.81 -11.11 16 4 C 0.19 5.12 3.99 -4.98 -0.02 5.10 16 5 C -0.52 -14.43 8.39 -34.44 -0.29 -14.72 16 6 H 0.06 1.76 7.68 -52.49 -0.40 1.36 16 7 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 8 N -0.89 -26.49 13.29 55.43 0.74 -25.75 16 9 Si 0.90 21.52 29.54 -169.99 -5.02 16.50 16 10 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 11 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 13 C 0.33 6.62 4.80 -154.66 -0.74 5.88 16 14 N -0.46 -9.48 8.49 -12.25 -0.10 -9.59 16 15 C 0.11 1.80 10.97 -17.51 -0.19 1.61 16 16 C -0.10 -1.48 6.34 -39.37 -0.25 -1.73 16 17 Cl -0.07 -0.90 28.98 -51.86 -1.50 -2.40 16 18 C -0.14 -2.03 8.94 -39.15 -0.35 -2.38 16 19 C 0.06 1.02 6.22 -38.92 -0.24 0.78 16 20 O -0.29 -4.39 7.82 -19.78 -0.15 -4.54 16 21 C 0.02 0.21 9.83 101.05 0.99 1.20 16 22 H 0.04 0.74 6.78 -51.93 -0.35 0.39 16 23 H 0.07 1.40 6.62 -51.93 -0.34 1.05 16 24 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 25 H 0.10 1.94 7.18 -51.93 -0.37 1.57 16 26 H 0.08 1.39 5.71 -51.93 -0.30 1.09 16 27 H 0.02 0.53 6.25 -51.93 -0.32 0.20 16 28 H 0.05 1.34 7.27 -51.92 -0.38 0.96 16 29 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 30 H 0.16 2.27 8.06 -52.49 -0.42 1.85 16 31 H 0.14 1.58 6.44 -52.49 -0.34 1.24 16 32 H 0.05 0.46 7.70 -51.93 -0.40 0.06 16 33 H 0.05 0.43 7.70 -51.93 -0.40 0.03 16 34 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 LS Contribution 295.92 15.07 4.46 4.46 Total: -1.00 -30.80 295.92 -7.27 -38.07 By element: Atomic # 1 Polarization: 2.82 SS G_CDS: -4.01 Total: -1.19 kcal Atomic # 6 Polarization: -3.57 SS G_CDS: -0.86 Total: -4.43 kcal Atomic # 7 Polarization: -46.28 SS G_CDS: -0.17 Total: -46.46 kcal Atomic # 8 Polarization: -4.39 SS G_CDS: -0.15 Total: -4.54 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 17 Polarization: -0.90 SS G_CDS: -1.50 Total: -2.40 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -30.80 -7.27 -38.07 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166593388.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.052 kcal (2) G-P(sol) polarization free energy of solvation -30.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.068 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds