Wall clock time and date at job start Mon Mar 30 2020 01:21:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46895 * 109.47297 * 2 1 4 4 C 1.46896 * 111.00071 * 291.49453 * 3 2 1 5 5 C 1.50699 * 109.47227 * 288.64408 * 4 3 2 6 6 H 1.07991 * 119.99948 * 355.07605 * 5 4 3 7 7 C 1.37877 * 119.99625 * 175.07018 * 5 4 3 8 8 N 1.31515 * 120.00246 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 119.99688 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47030 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47166 * 119.99668 * 9 7 5 12 12 H 1.48497 * 109.47050 * 240.00041 * 9 7 5 13 13 C 1.39315 * 110.99825 * 55.45052 * 3 2 1 14 14 N 1.32283 * 119.72025 * 236.04256 * 13 3 2 15 15 C 1.32023 * 121.68888 * 179.97438 * 14 13 3 16 16 C 1.38116 * 120.94045 * 0.02562 * 15 14 13 17 17 Cl 1.73594 * 120.33062 * 180.02562 * 16 15 14 18 18 C 1.38938 * 119.34050 * 0.02562 * 16 15 14 19 19 C 1.38706 * 118.44966 * 359.97438 * 18 16 15 20 20 O 1.36012 * 120.49052 * 180.02562 * 19 18 16 21 21 C 1.42909 * 116.99934 * 0.02562 * 20 19 18 22 22 H 1.09001 * 109.47004 * 304.44535 * 1 2 3 23 23 H 1.09000 * 109.47233 * 64.44462 * 1 2 3 24 24 H 1.08999 * 109.47459 * 184.44177 * 1 2 3 25 25 H 1.08999 * 109.47010 * 239.99578 * 2 1 3 26 26 H 1.09006 * 109.46812 * 120.00113 * 2 1 3 27 27 H 1.09006 * 109.47090 * 48.65097 * 4 3 2 28 28 H 1.09008 * 109.46710 * 168.64371 * 4 3 2 29 29 H 0.97002 * 119.99622 * 179.97438 * 8 7 5 30 30 H 1.08001 * 119.52982 * 180.27697 * 15 14 13 31 31 H 1.08000 * 120.77646 * 179.97438 * 18 16 15 32 32 H 1.08995 * 109.46741 * 300.00205 * 21 20 19 33 33 H 1.09004 * 109.46938 * 59.99569 * 21 20 19 34 34 H 1.08995 * 109.46779 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.7214 2.0488 -1.2760 5 6 2.6028 1.4783 -2.3571 6 1 3.3676 0.7582 -2.1064 7 6 2.4327 1.8757 -3.6664 8 7 1.5009 2.7522 -3.9718 9 14 3.5247 1.1681 -5.0066 10 1 4.4865 0.2089 -4.4064 11 1 2.6850 0.4654 -6.0098 12 1 4.2712 2.2677 -5.6689 13 6 1.4907 2.1015 1.0712 14 7 0.8244 3.2218 0.8457 15 6 0.3065 3.9311 1.8315 16 6 0.4427 3.5267 3.1451 17 17 -0.2453 4.4712 4.4289 18 6 1.1359 2.3565 3.4288 19 6 1.6691 1.6319 2.3731 20 8 2.3549 0.4801 2.6034 21 6 2.4915 0.0674 3.9647 22 1 -0.3633 0.5813 0.8475 23 1 -0.3634 0.4433 -0.9271 24 1 -0.3634 -1.0245 0.0796 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5139 0.8900 27 1 0.6755 1.8844 -1.5353 28 1 1.9085 3.1185 -1.1814 29 1 1.3816 3.0320 -4.8929 30 1 -0.2349 4.8383 1.6072 31 1 1.2567 2.0190 4.4476 32 1 3.0174 0.8389 4.5271 33 1 1.5035 -0.0882 4.3981 34 1 3.0573 -0.8632 4.0072 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166593388.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:02 Heat of formation + Delta-G solvation = -12.306582 kcal Electronic energy + Delta-G solvation = -18919.663877 eV Core-core repulsion = 15878.732130 eV Total energy + Delta-G solvation = -3040.931747 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.088 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.06136 -39.24773 -38.57462 -37.36098 -34.76250 -32.93250 -31.64234 -30.84884 -28.35982 -28.25624 -25.22372 -24.45933 -23.65899 -21.79385 -19.21455 -18.53726 -18.23803 -17.67656 -17.08659 -16.57393 -16.35289 -15.88733 -15.53641 -15.04706 -14.83080 -14.63444 -14.15830 -13.90509 -13.68099 -13.24087 -12.99479 -12.85166 -12.64688 -12.52956 -12.50055 -12.32017 -12.17498 -12.05605 -11.65088 -11.33477 -10.76366 -10.56217 -10.50500 -10.08512 -8.61786 -8.16807 -6.28504 -0.05415 0.17119 1.00457 1.42175 1.43145 1.56753 2.21482 2.40565 2.53749 2.96887 3.15187 3.52269 3.74252 3.91853 3.94006 4.22272 4.30830 4.32257 4.44565 4.50338 4.60870 4.74980 4.82094 4.86406 4.96879 5.14745 5.18312 5.38845 5.43129 5.66393 6.01905 6.02467 6.20112 6.62679 6.81033 7.06235 7.40425 8.93736 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.024531 B = 0.005427 C = 0.004762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.128589 B = 5158.507364 C = 5878.999164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.062 3.938 3 N -0.477 5.477 4 C 0.221 3.779 5 C -0.530 4.530 6 H 0.063 0.937 7 C 0.005 3.995 8 N -0.931 5.931 9 Si 0.970 3.030 10 H -0.262 1.262 11 H -0.276 1.276 12 H -0.280 1.280 13 C 0.289 3.711 14 N -0.506 5.506 15 C 0.090 3.910 16 C -0.086 4.086 17 Cl -0.043 7.043 18 C -0.131 4.131 19 C 0.071 3.929 20 O -0.310 6.310 21 C 0.010 3.990 22 H 0.040 0.960 23 H 0.033 0.967 24 H 0.088 0.912 25 H 0.077 0.923 26 H 0.105 0.895 27 H -0.012 1.012 28 H 0.008 0.992 29 H 0.264 0.736 30 H 0.175 0.825 31 H 0.181 0.819 32 H 0.066 0.934 33 H 0.071 0.929 34 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.009 -4.103 18.903 19.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.063 4.063 3 N -0.192 5.192 4 C 0.096 3.904 5 C -0.568 4.568 6 H 0.081 0.919 7 C -0.193 4.193 8 N -0.571 5.571 9 Si 0.794 3.206 10 H -0.186 1.186 11 H -0.202 1.202 12 H -0.206 1.206 13 C 0.055 3.945 14 N -0.222 5.222 15 C -0.067 4.067 16 C -0.116 4.116 17 Cl -0.015 7.015 18 C -0.158 4.158 19 C 0.020 3.980 20 O -0.223 6.223 21 C -0.084 4.084 22 H 0.059 0.941 23 H 0.052 0.948 24 H 0.107 0.893 25 H 0.096 0.904 26 H 0.123 0.877 27 H 0.006 0.994 28 H 0.026 0.974 29 H 0.073 0.927 30 H 0.192 0.808 31 H 0.198 0.802 32 H 0.085 0.915 33 H 0.089 0.911 34 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -1.597 -3.868 17.884 18.367 hybrid contribution -0.385 0.151 -0.034 0.415 sum -1.983 -3.717 17.850 18.341 Atomic orbital electron populations 1.22253 0.97235 1.02817 1.00263 1.22243 0.93291 0.86895 1.03897 1.59363 1.52422 1.04068 1.03395 1.19264 0.94289 0.93392 0.83462 1.21508 1.17709 1.25372 0.92232 0.91892 1.25885 0.96908 0.95408 1.01118 1.70131 1.34288 1.33139 1.19545 0.85329 0.78579 0.78303 0.78361 1.18568 1.20200 1.20608 1.19902 0.92378 0.92004 0.90254 1.68033 1.10408 1.07841 1.35882 1.22766 0.97767 0.99619 0.86552 1.21609 1.03624 0.96133 0.90274 1.98350 1.83184 1.71250 1.48669 1.21610 0.99461 0.94400 1.00326 1.19306 0.97333 0.89545 0.91856 1.86251 1.69558 1.35660 1.30789 1.23483 1.03160 1.02134 0.79613 0.94102 0.94779 0.89341 0.90429 0.87712 0.99383 0.97374 0.92718 0.80827 0.80151 0.91519 0.91086 0.85962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.11 9.37 71.98 0.67 -5.43 16 2 C 0.06 2.44 5.57 86.30 0.48 2.92 16 3 N -0.48 -22.15 4.63 -705.55 -3.26 -25.41 16 4 C 0.22 12.39 3.99 85.56 0.34 12.73 16 5 C -0.53 -30.84 8.39 25.60 0.21 -30.62 16 6 H 0.06 3.58 7.68 -2.92 -0.02 3.56 16 7 C 0.01 0.30 5.46 84.65 0.46 0.76 16 8 N -0.93 -57.43 13.29 21.45 0.28 -57.14 16 9 Si 0.97 44.92 29.54 68.60 2.03 46.94 16 10 H -0.26 -11.58 7.11 99.48 0.71 -10.88 16 11 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 12 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 13 C 0.29 11.93 4.80 133.09 0.64 12.57 16 14 N -0.51 -21.54 8.49 -192.66 -1.64 -23.17 16 15 C 0.09 3.00 10.97 84.64 0.93 3.93 16 16 C -0.09 -2.32 6.34 22.41 0.14 -2.17 16 17 Cl -0.04 -0.92 28.98 -2.72 -0.08 -1.00 16 18 C -0.13 -3.33 8.94 22.55 0.20 -3.13 16 19 C 0.07 2.26 6.22 22.70 0.14 2.40 16 20 O -0.31 -8.62 7.82 -93.68 -0.73 -9.36 16 21 C 0.01 0.16 9.83 113.37 1.11 1.27 16 22 H 0.04 1.47 6.78 -2.39 -0.02 1.45 16 23 H 0.03 1.45 6.62 -2.39 -0.02 1.44 16 24 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16 25 H 0.08 3.26 7.18 -2.39 -0.02 3.24 16 26 H 0.10 3.55 5.71 -2.38 -0.01 3.54 16 27 H -0.01 -0.71 6.25 -2.38 -0.01 -0.72 16 28 H 0.01 0.51 7.27 -2.38 -0.02 0.49 16 29 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 30 H 0.17 4.97 8.06 -2.91 -0.02 4.95 16 31 H 0.18 3.12 6.44 -2.91 -0.02 3.10 16 32 H 0.07 0.88 7.70 -2.39 -0.02 0.86 16 33 H 0.07 0.85 7.70 -2.38 -0.02 0.84 16 34 H 0.12 1.38 8.14 -2.39 -0.02 1.36 16 Total: -1.00 -70.41 295.92 3.06 -67.36 By element: Atomic # 1 Polarization: 5.44 SS G_CDS: 1.12 Total: 6.56 kcal Atomic # 6 Polarization: -10.12 SS G_CDS: 5.34 Total: -4.78 kcal Atomic # 7 Polarization: -101.11 SS G_CDS: -4.61 Total: -105.72 kcal Atomic # 8 Polarization: -8.62 SS G_CDS: -0.73 Total: -9.36 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.94 kcal Atomic # 17 Polarization: -0.92 SS G_CDS: -0.08 Total: -1.00 kcal Total: -70.41 3.06 -67.36 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166593388.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.051 kcal (2) G-P(sol) polarization free energy of solvation -70.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds