Wall clock time and date at job start Mon Mar 30 2020 00:44:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 119.99854 * 2 1 4 4 H 1.48492 * 109.47115 * 269.99885 * 3 2 1 5 5 H 1.48509 * 109.46858 * 30.00199 * 3 2 1 6 6 H 1.48498 * 109.47137 * 149.99786 * 3 2 1 7 7 C 1.37877 * 120.00189 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00014 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99814 * 0.02562 * 7 2 1 10 10 O 1.42899 * 109.47044 * 179.97438 * 9 7 2 11 11 C 1.42902 * 114.00274 * 180.02562 * 10 9 7 12 12 C 1.52996 * 109.47396 * 180.02562 * 11 10 9 13 13 S 1.81403 * 109.47372 * 180.02562 * 12 11 10 14 14 C 1.81391 * 103.00140 * 179.97438 * 13 12 11 15 15 C 1.50698 * 109.47419 * 179.97438 * 14 13 12 16 16 C 1.38219 * 120.00966 * 89.99600 * 15 14 13 17 17 C 1.38227 * 120.02402 * 179.72409 * 16 15 14 18 18 C 1.38263 * 120.05156 * 0.30685 * 17 16 15 19 19 C 1.38177 * 120.02526 * 359.97438 * 18 17 16 20 20 C 1.38439 * 120.01637 * 270.30305 * 15 14 13 21 21 F 1.35105 * 120.02463 * 359.97438 * 20 15 14 22 22 H 0.97003 * 120.00352 * 359.97438 * 1 2 3 23 23 H 1.08997 * 109.47251 * 59.99965 * 9 7 2 24 24 H 1.08998 * 109.47134 * 299.99725 * 9 7 2 25 25 H 1.08998 * 109.47083 * 59.99933 * 11 10 9 26 26 H 1.09011 * 109.46924 * 300.00290 * 11 10 9 27 27 H 1.08998 * 109.47558 * 59.99613 * 12 11 10 28 28 H 1.09003 * 109.47106 * 299.99760 * 12 11 10 29 29 H 1.09004 * 109.47315 * 59.99767 * 14 13 12 30 30 H 1.08998 * 109.47391 * 299.99963 * 14 13 12 31 31 H 1.08002 * 119.99072 * 0.02562 * 16 15 14 32 32 H 1.07999 * 119.97012 * 180.27779 * 17 16 15 33 33 H 1.08004 * 119.99046 * 179.97438 * 18 17 16 34 34 H 1.08000 * 120.01271 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4464 2.6527 0.7001 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 8 2.1797 -3.5852 0.0005 11 6 1.5652 -4.8754 0.0000 12 6 2.6481 -5.9562 0.0006 13 16 1.8681 -7.5939 -0.0009 14 6 3.2883 -8.7223 -0.0006 15 6 2.7978 -10.1473 -0.0012 16 6 2.5731 -10.8006 -1.1983 17 6 2.1287 -12.1094 -1.1992 18 6 1.9022 -12.7646 -0.0028 19 6 2.1206 -12.1115 1.1952 20 6 2.5659 -10.8003 1.1973 21 9 2.7797 -10.1608 2.3680 22 1 -0.4851 0.8400 0.0004 23 1 0.6247 -2.5571 -0.8896 24 1 0.6241 -2.5567 0.8903 25 1 0.9454 -4.9822 -0.8903 26 1 0.9446 -4.9827 0.8898 27 1 3.2677 -5.8492 0.8910 28 1 3.2689 -5.8490 -0.8889 29 1 3.8919 -8.5466 0.8899 30 1 3.8930 -8.5456 -0.8901 31 1 2.7496 -10.2899 -2.1334 32 1 1.9577 -12.6205 -2.1351 33 1 1.5546 -13.7871 -0.0047 34 1 1.9440 -12.6236 2.1295 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166984147.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:23 Heat of formation + Delta-G solvation = -98.343501 kcal Electronic energy + Delta-G solvation = -16848.428322 eV Core-core repulsion = 13785.889479 eV Total energy + Delta-G solvation = -3062.538843 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.083 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -49.94155 -39.97822 -38.78282 -35.05554 -33.98522 -32.53432 -31.48473 -29.22467 -28.21869 -24.70141 -24.05548 -23.73668 -22.54168 -18.73579 -18.56676 -17.80922 -17.50159 -17.22358 -17.07793 -16.80889 -16.53102 -16.31324 -15.31177 -15.16183 -15.02612 -14.70184 -14.39451 -14.24144 -13.86294 -13.80528 -13.13993 -12.99629 -12.85575 -12.67410 -12.57333 -12.45906 -12.09276 -11.96304 -11.38713 -11.17617 -10.93984 -10.35778 -9.92964 -9.63546 -8.80900 -8.35464 -6.49098 -0.20034 0.22788 0.73668 1.39269 1.42532 1.46775 1.54723 2.33190 2.68373 2.98329 3.16563 3.26697 3.43898 3.67668 3.80767 3.99221 4.02990 4.20215 4.29410 4.35527 4.42930 4.47427 4.60932 4.64632 4.83529 4.90107 5.08622 5.09768 5.17150 5.35263 5.45227 5.50342 5.89118 5.91869 6.41978 6.72496 7.22585 8.77058 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.054539 B = 0.002625 C = 0.002596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 513.268128 B =10662.690691 C =10784.739124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.005 3.995 3 Si 0.987 3.013 4 H -0.266 1.266 5 H -0.274 1.274 6 H -0.264 1.264 7 C -0.552 4.552 8 H 0.064 0.936 9 C 0.208 3.792 10 O -0.405 6.405 11 C 0.075 3.925 12 C -0.073 4.073 13 S -0.264 6.264 14 C -0.037 4.037 15 C -0.125 4.125 16 C -0.079 4.079 17 C -0.127 4.127 18 C -0.082 4.082 19 C -0.162 4.162 20 C 0.086 3.914 21 F -0.149 7.149 22 H 0.272 0.728 23 H -0.010 1.010 24 H -0.012 1.012 25 H 0.049 0.951 26 H 0.043 0.957 27 H 0.090 0.910 28 H 0.098 0.902 29 H 0.090 0.910 30 H 0.116 0.884 31 H 0.149 0.851 32 H 0.161 0.839 33 H 0.165 0.835 34 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.785 -27.572 -2.034 28.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.193 4.193 3 Si 0.810 3.190 4 H -0.191 1.191 5 H -0.198 1.198 6 H -0.188 1.188 7 C -0.589 4.589 8 H 0.083 0.917 9 C 0.133 3.867 10 O -0.326 6.326 11 C -0.003 4.003 12 C -0.222 4.222 13 S -0.035 6.035 14 C -0.184 4.184 15 C -0.127 4.127 16 C -0.098 4.098 17 C -0.145 4.145 18 C -0.100 4.100 19 C -0.181 4.181 20 C 0.065 3.935 21 F -0.128 7.128 22 H 0.081 0.919 23 H 0.007 0.993 24 H 0.005 0.995 25 H 0.067 0.933 26 H 0.062 0.938 27 H 0.108 0.892 28 H 0.117 0.883 29 H 0.109 0.891 30 H 0.135 0.865 31 H 0.167 0.833 32 H 0.179 0.821 33 H 0.183 0.817 34 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 4.768 -27.584 -1.980 28.063 hybrid contribution 1.018 1.435 0.496 1.828 sum 5.786 -26.149 -1.483 26.823 Atomic orbital electron populations 1.70073 1.07851 1.28845 1.50172 1.26022 0.96017 1.03559 0.93727 0.85121 0.78302 0.76658 0.78949 1.19086 1.19845 1.18790 1.21378 0.94222 0.90598 1.52738 0.91737 1.19900 0.88631 0.84342 0.93804 1.87783 1.35630 1.13870 1.95301 1.21999 0.94568 0.83370 1.00336 1.23107 1.00237 0.92276 1.06531 1.87042 1.17280 1.00970 1.98227 1.22207 0.96951 0.91999 1.07245 1.19389 1.05438 0.94391 0.93481 1.21272 0.96418 0.95339 0.96805 1.21620 0.98786 0.94155 0.99968 1.21493 0.96418 1.01362 0.90740 1.21447 1.02430 0.92541 1.01682 1.17953 1.02412 0.92509 0.80585 1.91475 1.92558 1.82252 1.46527 0.91892 0.99256 0.99454 0.93309 0.93834 0.89173 0.88332 0.89116 0.86525 0.83286 0.82142 0.81734 0.83202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.67 13.29 21.45 0.28 -56.39 16 2 C 0.01 0.32 5.46 84.66 0.46 0.78 16 3 Si 0.99 44.64 29.54 68.60 2.03 46.66 16 4 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 5 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 6 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 7 C -0.55 -33.44 9.43 25.60 0.24 -33.20 16 8 H 0.06 3.84 7.81 -2.91 -0.02 3.82 16 9 C 0.21 12.09 5.69 71.24 0.41 12.49 16 10 O -0.41 -20.56 10.33 -148.98 -1.54 -22.09 16 11 C 0.08 3.02 5.95 71.98 0.43 3.45 16 12 C -0.07 -2.31 6.31 71.98 0.45 -1.86 16 13 S -0.26 -7.42 21.72 -56.49 -1.23 -8.65 16 14 C -0.04 -0.78 5.89 71.24 0.42 -0.36 16 15 C -0.12 -2.45 5.15 -19.82 -0.10 -2.56 16 16 C -0.08 -1.16 9.70 22.26 0.22 -0.94 16 17 C -0.13 -1.36 10.04 22.27 0.22 -1.13 16 18 C -0.08 -0.85 10.04 22.26 0.22 -0.63 16 19 C -0.16 -2.46 10.03 22.31 0.22 -2.23 16 20 C 0.09 1.81 7.24 22.37 0.16 1.97 16 21 F -0.15 -3.75 16.48 44.97 0.74 -3.01 16 22 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 23 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 24 H -0.01 -0.75 8.14 -2.39 -0.02 -0.76 16 25 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 26 H 0.04 1.76 8.14 -2.38 -0.02 1.74 16 27 H 0.09 2.78 8.14 -2.39 -0.02 2.76 16 28 H 0.10 2.87 8.14 -2.39 -0.02 2.85 16 29 H 0.09 1.96 7.65 -2.39 -0.02 1.94 16 30 H 0.12 1.96 8.09 -2.39 -0.02 1.94 16 31 H 0.15 1.70 8.06 -2.91 -0.02 1.68 16 32 H 0.16 0.76 8.06 -2.91 -0.02 0.73 16 33 H 0.17 0.64 8.06 -2.91 -0.02 0.62 16 34 H 0.15 1.73 8.06 -2.91 -0.02 1.71 16 Total: -1.00 -70.26 316.54 4.72 -65.54 By element: Atomic # 1 Polarization: 1.09 SS G_CDS: 1.08 Total: 2.17 kcal Atomic # 6 Polarization: -27.59 SS G_CDS: 3.36 Total: -24.23 kcal Atomic # 7 Polarization: -56.67 SS G_CDS: 0.28 Total: -56.39 kcal Atomic # 8 Polarization: -20.56 SS G_CDS: -1.54 Total: -22.09 kcal Atomic # 9 Polarization: -3.75 SS G_CDS: 0.74 Total: -3.01 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.66 kcal Atomic # 16 Polarization: -7.42 SS G_CDS: -1.23 Total: -8.65 kcal Total: -70.26 4.72 -65.54 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166984147.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.806 kcal (2) G-P(sol) polarization free energy of solvation -70.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds