Wall clock time and date at job start Mon Mar 30 2020 00:58:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47336 * 2 1 4 4 C 1.52999 * 109.47079 * 179.97438 * 3 2 1 5 5 N 1.46496 * 109.46993 * 179.97438 * 4 3 2 6 6 C 1.36883 * 120.00315 * 265.20869 * 5 4 3 7 7 H 1.07999 * 120.00158 * 143.73174 * 6 5 4 8 8 C 1.38810 * 119.99531 * 323.72824 * 6 5 4 9 9 N 1.31574 * 120.00252 * 348.29757 * 8 6 5 10 10 Si 1.86807 * 119.99705 * 168.29776 * 8 6 5 11 11 H 1.48501 * 109.46823 * 89.99914 * 10 8 6 12 12 H 1.48500 * 109.47036 * 210.00020 * 10 8 6 13 13 H 1.48502 * 109.47030 * 330.00171 * 10 8 6 14 14 C 1.38991 * 119.99962 * 85.20746 * 5 4 3 15 15 C 1.39132 * 119.70184 * 346.48069 * 14 5 4 16 16 C 1.38388 * 119.12891 * 179.79064 * 15 14 5 17 17 C 1.38800 * 118.53733 * 0.48364 * 16 15 14 18 18 C 1.38315 * 119.32507 * 359.74119 * 17 16 15 19 19 Cl 1.73598 * 119.58759 * 180.02562 * 18 17 16 20 20 N 1.32034 * 120.82652 * 0.02562 * 18 17 16 21 21 O 1.41600 * 119.20933 * 179.97438 * 20 18 17 22 22 H 1.09005 * 109.47164 * 59.99876 * 1 2 3 23 23 H 1.08999 * 109.47483 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47588 * 300.00222 * 1 2 3 25 25 H 1.09003 * 109.46932 * 239.99579 * 2 1 3 26 26 H 1.09003 * 109.46658 * 120.00137 * 2 1 3 27 27 H 1.09000 * 109.46572 * 59.99742 * 3 2 1 28 28 H 1.08996 * 109.46923 * 300.00224 * 3 2 1 29 29 H 1.09005 * 109.46738 * 60.00334 * 4 3 2 30 30 H 1.08993 * 109.47154 * 300.00073 * 4 3 2 31 31 H 0.96999 * 120.00151 * 179.97438 * 9 8 6 32 32 H 1.08001 * 120.43125 * 0.02759 * 15 14 5 33 33 H 1.08002 * 120.72970 * 180.22650 * 16 15 14 34 34 H 1.07995 * 120.33526 * 179.77109 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 7 4.0584 2.8236 0.0000 6 6 4.3804 3.4352 -1.1815 7 1 4.1755 4.4867 -1.3187 8 6 4.9704 2.7039 -2.2032 9 7 5.4298 1.4941 -1.9658 10 14 5.1121 3.4376 -3.9153 11 1 6.3976 4.1715 -4.0344 12 1 5.0677 2.3498 -4.9252 13 1 3.9837 4.3748 -4.1472 14 6 4.1947 3.5130 1.1992 15 6 3.6112 3.0061 2.3560 16 6 3.7581 3.7000 3.5443 17 6 4.4774 4.8870 3.5345 18 6 5.0273 5.3361 2.3475 19 17 5.9288 6.8195 2.3275 20 7 4.8750 4.6507 1.2293 21 8 5.4520 5.1425 0.0333 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 1.8933 -0.5139 -0.8900 26 1 1.8932 -0.5139 0.8900 27 1 1.6766 1.9563 0.8900 28 1 1.6767 1.9563 -0.8899 29 1 3.9337 0.9285 -0.8892 30 1 3.9330 0.9287 0.8908 31 1 5.8418 0.9829 -2.6799 32 1 3.0542 2.0813 2.3277 33 1 3.3191 3.3282 4.4584 34 1 4.6069 5.4538 4.4446 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167128661.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:28 Heat of formation + Delta-G solvation = 67.213291 kcal Electronic energy + Delta-G solvation = -19040.604185 eV Core-core repulsion = 16003.120679 eV Total energy + Delta-G solvation = -3037.483507 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.088 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.15439 -37.11587 -35.96332 -34.40236 -33.26965 -32.25787 -29.42124 -28.46886 -28.33054 -24.97789 -23.66386 -22.62744 -21.38198 -20.57201 -18.12312 -17.05709 -15.92711 -15.68455 -15.11373 -14.88947 -14.57270 -14.21693 -13.84792 -13.64411 -13.57164 -12.55547 -12.37014 -11.97340 -11.75503 -11.44927 -11.31435 -11.15902 -11.06492 -10.83854 -10.69803 -10.55525 -10.50130 -10.35142 -10.10056 -10.05617 -9.56395 -8.75688 -7.64619 -7.48164 -6.72188 -6.35673 -3.89003 1.57946 1.84641 2.29063 3.16560 3.25082 3.25414 3.66210 4.05265 4.12312 4.62136 4.92170 5.25765 5.28826 5.35110 5.42323 5.61465 5.73022 5.78666 5.94070 6.03100 6.09985 6.10903 6.17834 6.37007 6.45587 6.53089 6.70825 6.81058 6.92181 7.10494 7.40650 7.52916 7.94154 8.47666 8.61268 8.99570 9.27442 10.43002 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.014087 B = 0.008614 C = 0.005674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1987.136971 B = 3249.882020 C = 4933.838826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.119 4.119 3 C -0.136 4.136 4 C 0.096 3.904 5 N -0.376 5.376 6 C -0.229 4.229 7 H 0.125 0.875 8 C 0.022 3.978 9 N -0.864 5.864 10 Si 0.942 3.058 11 H -0.272 1.272 12 H -0.283 1.283 13 H -0.267 1.267 14 C 0.322 3.678 15 C -0.242 4.242 16 C -0.024 4.024 17 C -0.268 4.268 18 C 0.208 3.792 19 Cl -0.028 7.028 20 N -0.181 5.181 21 O -0.555 6.555 22 H 0.052 0.948 23 H 0.049 0.951 24 H 0.051 0.949 25 H 0.063 0.937 26 H 0.059 0.941 27 H 0.056 0.944 28 H 0.066 0.934 29 H 0.138 0.862 30 H 0.056 0.944 31 H 0.274 0.726 32 H 0.141 0.859 33 H 0.133 0.867 34 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.146 -2.455 7.773 10.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.157 4.157 3 C -0.175 4.175 4 C -0.026 4.026 5 N -0.059 5.059 6 C -0.359 4.359 7 H 0.142 0.858 8 C -0.182 4.182 9 N -0.501 5.501 10 Si 0.768 3.232 11 H -0.198 1.198 12 H -0.208 1.208 13 H -0.191 1.191 14 C 0.089 3.911 15 C -0.269 4.269 16 C -0.049 4.049 17 C -0.296 4.296 18 C 0.050 3.950 19 Cl 0.001 6.999 20 N 0.120 4.880 21 O -0.602 6.602 22 H 0.071 0.929 23 H 0.068 0.932 24 H 0.070 0.930 25 H 0.082 0.918 26 H 0.077 0.923 27 H 0.075 0.925 28 H 0.085 0.915 29 H 0.155 0.845 30 H 0.074 0.926 31 H 0.084 0.916 32 H 0.158 0.842 33 H 0.151 0.849 34 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -6.820 -2.576 6.862 10.012 hybrid contribution 0.495 0.563 -0.793 1.091 sum -6.325 -2.013 6.069 8.994 Atomic orbital electron populations 1.21759 0.96288 1.00965 1.01676 1.21420 0.95280 0.97023 1.01985 1.22063 0.96818 0.96304 1.02304 1.22203 0.91905 0.82448 1.06091 1.43242 1.49841 1.11077 1.01741 1.20617 1.32557 0.97107 0.85570 0.85803 1.25674 0.94932 0.95958 1.01661 1.69723 1.35393 1.10953 1.33989 0.85653 0.79679 0.78369 0.79526 1.19802 1.20847 1.19106 1.18286 0.96110 0.88535 0.88156 1.20703 1.10791 1.04587 0.90776 1.20958 0.94217 0.92502 0.97196 1.20442 1.11286 1.02213 0.95692 1.21428 0.97194 0.88530 0.87808 1.98357 1.72973 1.30204 1.98377 1.42456 1.24854 1.11126 1.09607 1.97526 1.72268 1.81231 1.09200 0.92876 0.93195 0.92974 0.91839 0.92259 0.92488 0.91482 0.84471 0.92569 0.91561 0.84179 0.84874 0.84287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 9.91 37.16 0.37 -1.35 16 2 C -0.12 -1.60 5.93 -26.73 -0.16 -1.76 16 3 C -0.14 -2.28 5.27 -26.73 -0.14 -2.42 16 4 C 0.10 1.98 4.55 -4.04 -0.02 1.96 16 5 N -0.38 -9.25 2.66 -115.02 -0.31 -9.55 16 6 C -0.23 -6.28 7.35 -15.09 -0.11 -6.39 16 7 H 0.12 3.72 6.24 -52.49 -0.33 3.39 16 8 C 0.02 0.58 5.16 -17.45 -0.09 0.49 16 9 N -0.86 -22.58 10.85 55.49 0.60 -21.98 16 10 Si 0.94 21.44 29.57 -169.99 -5.03 16.42 16 11 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 12 H -0.28 -6.09 7.11 56.52 0.40 -5.68 16 13 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 14 C 0.32 7.60 7.23 -154.87 -1.12 6.48 16 15 C -0.24 -4.43 8.67 -39.19 -0.34 -4.77 16 16 C -0.02 -0.37 10.16 -39.32 -0.40 -0.77 16 17 C -0.27 -4.53 9.87 -39.34 -0.39 -4.92 16 18 C 0.21 4.46 7.17 -17.44 -0.13 4.33 16 19 Cl -0.03 -0.54 28.25 -51.86 -1.46 -2.01 16 20 N -0.18 -4.65 3.60 -9.49 -0.03 -4.69 16 21 O -0.55 -17.11 15.16 -11.47 -0.17 -17.28 16 22 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 23 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 24 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 25 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 26 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.06 0.91 6.62 -51.93 -0.34 0.56 16 28 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 29 H 0.14 3.13 5.07 -51.93 -0.26 2.87 16 30 H 0.06 1.08 7.12 -51.93 -0.37 0.71 16 31 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 32 H 0.14 2.22 5.56 -52.49 -0.29 1.93 16 33 H 0.13 1.48 8.06 -52.49 -0.42 1.05 16 34 H 0.14 1.88 8.06 -52.49 -0.42 1.45 16 LS Contribution 296.58 15.07 4.47 4.47 Total: -1.00 -32.18 296.58 -8.57 -40.75 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: -4.11 Total: 2.98 kcal Atomic # 6 Polarization: -6.59 SS G_CDS: -2.52 Total: -9.11 kcal Atomic # 7 Polarization: -36.48 SS G_CDS: 0.26 Total: -36.22 kcal Atomic # 8 Polarization: -17.11 SS G_CDS: -0.17 Total: -17.28 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.03 Total: 16.42 kcal Atomic # 17 Polarization: -0.54 SS G_CDS: -1.46 Total: -2.01 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -32.18 -8.57 -40.75 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167128661.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.967 kcal (2) G-P(sol) polarization free energy of solvation -32.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.753 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds