Wall clock time and date at job start Mon Mar 30 2020 00:58:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47336 * 2 1 4 4 C 1.52999 * 109.47079 * 179.97438 * 3 2 1 5 5 N 1.46496 * 109.46993 * 179.97438 * 4 3 2 6 6 C 1.36883 * 120.00315 * 265.20869 * 5 4 3 7 7 H 1.07999 * 120.00158 * 143.73174 * 6 5 4 8 8 C 1.38810 * 119.99531 * 323.72824 * 6 5 4 9 9 N 1.31574 * 120.00252 * 348.29757 * 8 6 5 10 10 Si 1.86807 * 119.99705 * 168.29776 * 8 6 5 11 11 H 1.48501 * 109.46823 * 89.99914 * 10 8 6 12 12 H 1.48500 * 109.47036 * 210.00020 * 10 8 6 13 13 H 1.48502 * 109.47030 * 330.00171 * 10 8 6 14 14 C 1.38991 * 119.99962 * 85.20746 * 5 4 3 15 15 C 1.39132 * 119.70184 * 346.48069 * 14 5 4 16 16 C 1.38388 * 119.12891 * 179.79064 * 15 14 5 17 17 C 1.38800 * 118.53733 * 0.48364 * 16 15 14 18 18 C 1.38315 * 119.32507 * 359.74119 * 17 16 15 19 19 Cl 1.73598 * 119.58759 * 180.02562 * 18 17 16 20 20 N 1.32034 * 120.82652 * 0.02562 * 18 17 16 21 21 O 1.41600 * 119.20933 * 179.97438 * 20 18 17 22 22 H 1.09005 * 109.47164 * 59.99876 * 1 2 3 23 23 H 1.08999 * 109.47483 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47588 * 300.00222 * 1 2 3 25 25 H 1.09003 * 109.46932 * 239.99579 * 2 1 3 26 26 H 1.09003 * 109.46658 * 120.00137 * 2 1 3 27 27 H 1.09000 * 109.46572 * 59.99742 * 3 2 1 28 28 H 1.08996 * 109.46923 * 300.00224 * 3 2 1 29 29 H 1.09005 * 109.46738 * 60.00334 * 4 3 2 30 30 H 1.08993 * 109.47154 * 300.00073 * 4 3 2 31 31 H 0.96999 * 120.00151 * 179.97438 * 9 8 6 32 32 H 1.08001 * 120.43125 * 0.02759 * 15 14 5 33 33 H 1.08002 * 120.72970 * 180.22650 * 16 15 14 34 34 H 1.07995 * 120.33526 * 179.77109 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 7 4.0584 2.8236 0.0000 6 6 4.3804 3.4352 -1.1815 7 1 4.1755 4.4867 -1.3187 8 6 4.9704 2.7039 -2.2032 9 7 5.4298 1.4941 -1.9658 10 14 5.1121 3.4376 -3.9153 11 1 6.3976 4.1715 -4.0344 12 1 5.0677 2.3498 -4.9252 13 1 3.9837 4.3748 -4.1472 14 6 4.1947 3.5130 1.1992 15 6 3.6112 3.0061 2.3560 16 6 3.7581 3.7000 3.5443 17 6 4.4774 4.8870 3.5345 18 6 5.0273 5.3361 2.3475 19 17 5.9288 6.8195 2.3275 20 7 4.8750 4.6507 1.2293 21 8 5.4520 5.1425 0.0333 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 1.8933 -0.5139 -0.8900 26 1 1.8932 -0.5139 0.8900 27 1 1.6766 1.9563 0.8900 28 1 1.6767 1.9563 -0.8899 29 1 3.9337 0.9285 -0.8892 30 1 3.9330 0.9287 0.8908 31 1 5.8418 0.9829 -2.6799 32 1 3.0542 2.0813 2.3277 33 1 3.3191 3.3282 4.4584 34 1 4.6069 5.4538 4.4446 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167128661.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:28 Heat of formation + Delta-G solvation = 47.786583 kcal Electronic energy + Delta-G solvation = -19041.446591 eV Core-core repulsion = 16003.120679 eV Total energy + Delta-G solvation = -3038.325912 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.088 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.86275 -38.71203 -37.54664 -35.74494 -34.86589 -34.01467 -30.96540 -30.31624 -29.86808 -26.70173 -25.12260 -24.22417 -22.85857 -21.85311 -19.87108 -18.69694 -17.72173 -17.19709 -16.63617 -16.53497 -16.24153 -15.72106 -15.36174 -15.21782 -14.88810 -13.86292 -13.78784 -13.48456 -13.19555 -13.10280 -12.85387 -12.76313 -12.73455 -12.29764 -12.16037 -12.00572 -11.95500 -11.79990 -11.63589 -11.43198 -11.21403 -10.51777 -9.58370 -9.43992 -8.61767 -8.20471 -5.84614 -0.01532 0.29007 0.70773 1.30170 1.38373 1.43359 1.98061 2.24515 2.51031 2.92742 3.05715 3.93323 3.98262 4.11059 4.19688 4.32978 4.34045 4.47360 4.57548 4.80677 4.90513 5.03138 5.06478 5.08065 5.26184 5.28087 5.42250 5.45915 5.48986 5.52292 5.62665 5.86238 6.16336 6.51486 6.76200 7.20155 7.45846 8.60660 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.014087 B = 0.008614 C = 0.005674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1987.136971 B = 3249.882020 C = 4933.838826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.114 4.114 3 C -0.123 4.123 4 C 0.101 3.899 5 N -0.412 5.412 6 C -0.251 4.251 7 H 0.080 0.920 8 C -0.017 4.017 9 N -0.894 5.894 10 Si 0.983 3.017 11 H -0.294 1.294 12 H -0.260 1.260 13 H -0.269 1.269 14 C 0.319 3.681 15 C -0.228 4.228 16 C 0.004 3.996 17 C -0.219 4.219 18 C 0.172 3.828 19 Cl -0.023 7.023 20 N -0.220 5.220 21 O -0.621 6.621 22 H 0.044 0.956 23 H 0.067 0.933 24 H 0.063 0.937 25 H 0.051 0.949 26 H 0.078 0.922 27 H 0.070 0.930 28 H 0.040 0.960 29 H 0.110 0.890 30 H 0.068 0.932 31 H 0.272 0.728 32 H 0.174 0.826 33 H 0.206 0.794 34 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.154 -3.400 12.475 15.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.152 4.152 3 C -0.161 4.161 4 C -0.021 4.021 5 N -0.101 5.101 6 C -0.382 4.382 7 H 0.098 0.902 8 C -0.217 4.217 9 N -0.533 5.533 10 Si 0.809 3.191 11 H -0.221 1.221 12 H -0.184 1.184 13 H -0.194 1.194 14 C 0.086 3.914 15 C -0.253 4.253 16 C -0.021 4.021 17 C -0.246 4.246 18 C 0.019 3.981 19 Cl 0.006 6.994 20 N 0.077 4.923 21 O -0.668 6.668 22 H 0.063 0.937 23 H 0.086 0.914 24 H 0.082 0.918 25 H 0.070 0.930 26 H 0.096 0.904 27 H 0.089 0.911 28 H 0.059 0.941 29 H 0.128 0.872 30 H 0.086 0.914 31 H 0.082 0.918 32 H 0.191 0.809 33 H 0.223 0.777 34 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -8.826 -3.465 11.611 14.991 hybrid contribution 1.049 1.044 -1.580 2.165 sum -7.777 -2.421 10.032 12.922 Atomic orbital electron populations 1.21730 0.94490 1.02238 1.01844 1.21401 0.96741 0.94642 1.02399 1.21949 0.94188 0.98387 1.01611 1.22171 0.94034 0.80668 1.05207 1.43303 1.53103 1.12439 1.01237 1.19964 1.34742 0.95423 0.88034 0.90240 1.26089 0.95263 0.96653 1.03706 1.69802 1.37786 1.11507 1.34248 0.85074 0.78107 0.78085 0.77878 1.22122 1.18432 1.19376 1.19334 0.94574 0.87376 0.90076 1.21367 1.08741 1.05537 0.89696 1.21841 0.91361 0.90437 0.98423 1.21385 1.06341 1.01715 0.95134 1.22254 0.98377 0.89357 0.88075 1.98357 1.72947 1.29822 1.98320 1.42688 1.27022 1.12918 1.09632 1.97497 1.74790 1.82298 1.12195 0.93715 0.91368 0.91841 0.92969 0.90365 0.91149 0.94084 0.87234 0.91382 0.91817 0.80910 0.77725 0.79243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.97 9.91 71.98 0.71 -2.25 16 2 C -0.11 -2.85 5.93 30.59 0.18 -2.67 16 3 C -0.12 -4.02 5.27 30.59 0.16 -3.86 16 4 C 0.10 4.21 4.55 86.38 0.39 4.60 16 5 N -0.41 -21.02 2.66 -517.80 -1.38 -22.40 16 6 C -0.25 -14.89 7.35 84.04 0.62 -14.27 16 7 H 0.08 5.28 6.24 -2.91 -0.02 5.26 16 8 C -0.02 -0.98 5.16 84.87 0.44 -0.54 16 9 N -0.89 -49.82 10.85 21.65 0.23 -49.59 16 10 Si 0.98 47.45 29.57 68.60 2.03 49.48 16 11 H -0.29 -14.98 7.11 99.48 0.71 -14.27 16 12 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 13 H -0.27 -12.78 7.11 99.48 0.71 -12.07 16 14 C 0.32 14.85 7.23 133.01 0.96 15.81 16 15 C -0.23 -7.21 8.67 22.52 0.20 -7.02 16 16 C 0.00 0.08 10.16 22.44 0.23 0.31 16 17 C -0.22 -5.96 9.87 22.42 0.22 -5.74 16 18 C 0.17 6.99 7.17 84.68 0.61 7.59 16 19 Cl -0.02 -0.88 28.25 -2.72 -0.08 -0.96 16 20 N -0.22 -11.39 3.60 -183.94 -0.66 -12.05 16 21 O -0.62 -40.79 15.16 -38.78 -0.59 -41.38 16 22 H 0.04 0.98 8.14 -2.38 -0.02 0.96 16 23 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 24 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 25 H 0.05 1.42 8.14 -2.39 -0.02 1.41 16 26 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 27 H 0.07 2.05 6.62 -2.39 -0.02 2.03 16 28 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.11 5.26 5.07 -2.38 -0.01 5.25 16 30 H 0.07 2.53 7.12 -2.39 -0.02 2.51 16 31 H 0.27 14.27 8.31 -92.71 -0.77 13.50 16 32 H 0.17 4.42 5.56 -2.91 -0.02 4.40 16 33 H 0.21 2.12 8.06 -2.91 -0.02 2.09 16 34 H 0.19 3.42 8.06 -2.91 -0.02 3.40 16 Total: -1.00 -81.05 296.58 5.39 -75.67 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: 1.11 Total: 9.25 kcal Atomic # 6 Polarization: -12.74 SS G_CDS: 4.72 Total: -8.02 kcal Atomic # 7 Polarization: -82.24 SS G_CDS: -1.80 Total: -84.04 kcal Atomic # 8 Polarization: -40.79 SS G_CDS: -0.59 Total: -41.38 kcal Atomic # 14 Polarization: 47.45 SS G_CDS: 2.03 Total: 49.48 kcal Atomic # 17 Polarization: -0.88 SS G_CDS: -0.08 Total: -0.96 kcal Total: -81.05 5.39 -75.67 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167128661.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.453 kcal (2) G-P(sol) polarization free energy of solvation -81.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.666 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds