Wall clock time and date at job start Mon Mar 30 2020 00:58:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47173 * 2 1 4 4 C 1.53009 * 109.47400 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.47149 * 173.75265 * 4 3 2 6 6 C 1.36884 * 119.99712 * 91.83138 * 5 4 3 7 7 H 1.08000 * 119.99778 * 227.46137 * 6 5 4 8 8 C 1.38797 * 119.99777 * 47.18803 * 6 5 4 9 9 N 1.31585 * 119.99638 * 210.97233 * 8 6 5 10 10 Si 1.86801 * 120.00279 * 30.97276 * 8 6 5 11 11 H 1.48507 * 109.46883 * 55.44680 * 10 8 6 12 12 H 1.48494 * 109.47032 * 175.44828 * 10 8 6 13 13 H 1.48503 * 109.46782 * 295.45092 * 10 8 6 14 14 C 1.39023 * 120.00361 * 271.82976 * 5 4 3 15 15 C 1.39137 * 119.69689 * 193.12002 * 14 5 4 16 16 C 1.38365 * 119.11445 * 179.70709 * 15 14 5 17 17 C 1.38940 * 118.51251 * 0.53714 * 16 15 14 18 18 Cl 1.73599 * 120.34322 * 179.77370 * 17 16 15 19 19 C 1.38282 * 119.31445 * 359.74052 * 17 16 15 20 20 N 1.31956 * 120.83365 * 359.97438 * 19 17 16 21 21 O 1.41597 * 119.19186 * 180.02562 * 20 19 17 22 22 H 1.09004 * 109.47213 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.47070 * 300.00090 * 1 2 3 24 24 H 1.08998 * 109.46621 * 60.00652 * 1 2 3 25 25 H 1.08998 * 109.47530 * 239.99292 * 2 1 3 26 26 H 1.09003 * 109.47079 * 119.99393 * 2 1 3 27 27 H 1.08995 * 109.47632 * 59.99756 * 3 2 1 28 28 H 1.09004 * 109.47465 * 299.99321 * 3 2 1 29 29 H 1.09000 * 109.46417 * 53.75446 * 4 3 2 30 30 H 1.09002 * 109.46928 * 293.75870 * 4 3 2 31 31 H 0.96999 * 120.00012 * 179.97438 * 9 8 6 32 32 H 1.07991 * 120.44443 * 359.97438 * 15 14 5 33 33 H 1.08000 * 120.74429 * 180.28379 * 16 15 14 34 34 H 1.08003 * 119.58692 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5701 1.4425 0.0006 5 7 4.0584 2.8155 -0.1497 6 6 4.3218 3.5734 0.9593 7 1 3.9494 4.5852 1.0227 8 6 5.0625 3.0397 2.0047 9 7 4.8362 3.4337 3.2397 10 14 6.3807 1.7622 1.6586 11 1 7.3449 2.3021 0.6666 12 1 7.0966 1.4359 2.9180 13 1 5.7482 0.5330 1.1160 14 6 4.2544 3.3486 -1.4185 15 6 4.9674 4.5344 -1.5654 16 6 5.1605 5.0510 -2.8344 17 6 4.6222 4.3677 -3.9177 18 17 4.8308 4.9764 -5.5301 19 6 3.9193 3.1972 -3.6984 20 7 3.7559 2.7252 -2.4770 21 8 3.0303 1.5233 -2.2925 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3632 0.5137 -0.8900 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8901 27 1 1.6767 1.9563 0.8899 28 1 1.6768 1.9563 -0.8901 29 1 3.9336 0.8348 -0.8279 30 1 3.9330 1.0286 0.9415 31 1 5.3536 3.0605 3.9703 32 1 5.3684 5.0424 -0.7009 33 1 5.7138 5.9672 -2.9791 34 1 3.4993 2.6622 -4.5374 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167132248.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:30 Heat of formation + Delta-G solvation = 51.764457 kcal Electronic energy + Delta-G solvation = -19085.074359 eV Core-core repulsion = 16046.920941 eV Total energy + Delta-G solvation = -3038.153418 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.088 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.07689 -38.67644 -37.46729 -35.85981 -34.92754 -34.34826 -31.45143 -30.78357 -29.48363 -26.82943 -25.21221 -24.43261 -23.03023 -22.03481 -19.68531 -18.59799 -18.15450 -17.70296 -16.75754 -16.47372 -16.28583 -15.81325 -15.46205 -15.03198 -14.89222 -14.67930 -14.06369 -13.62337 -13.53738 -13.37692 -13.22114 -12.90751 -12.79201 -12.28667 -12.19136 -12.09145 -11.86621 -11.77567 -11.66874 -11.19465 -11.04365 -10.68354 -9.62289 -9.52699 -8.77392 -8.59309 -6.24530 -0.03028 0.02301 0.97161 1.22811 1.29007 1.35454 1.93277 2.11154 2.32124 2.52609 2.77325 3.72293 3.76381 3.95923 4.11520 4.16334 4.34644 4.44202 4.47750 4.77566 4.81937 4.90573 4.95848 4.97824 5.05490 5.12891 5.22704 5.29423 5.39152 5.47537 5.62677 5.80998 5.99849 6.22554 6.58584 6.95497 7.32982 8.34439 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.015653 B = 0.007727 C = 0.005690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1788.309498 B = 3622.922588 C = 4919.641551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.109 4.109 3 C -0.098 4.098 4 C 0.118 3.882 5 N -0.430 5.430 6 C -0.343 4.343 7 H 0.084 0.916 8 C 0.058 3.942 9 N -0.858 5.858 10 Si 0.909 3.091 11 H -0.259 1.259 12 H -0.270 1.270 13 H -0.264 1.264 14 C 0.338 3.662 15 C -0.191 4.191 16 C -0.003 4.003 17 C -0.146 4.146 18 Cl -0.032 7.032 19 C 0.137 3.863 20 N -0.207 5.207 21 O -0.614 6.614 22 H 0.070 0.930 23 H 0.053 0.947 24 H 0.045 0.955 25 H 0.052 0.948 26 H 0.055 0.945 27 H 0.027 0.973 28 H 0.062 0.938 29 H 0.085 0.915 30 H 0.043 0.957 31 H 0.288 0.712 32 H 0.167 0.833 33 H 0.187 0.813 34 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.691 2.183 -10.182 10.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.148 4.148 3 C -0.136 4.136 4 C -0.004 4.004 5 N -0.121 5.121 6 C -0.470 4.470 7 H 0.102 0.898 8 C -0.153 4.153 9 N -0.489 5.489 10 Si 0.731 3.269 11 H -0.183 1.183 12 H -0.194 1.194 13 H -0.190 1.190 14 C 0.108 3.892 15 C -0.217 4.217 16 C -0.028 4.028 17 C -0.180 4.180 18 Cl -0.003 7.003 19 C -0.011 4.011 20 N 0.093 4.907 21 O -0.660 6.660 22 H 0.089 0.911 23 H 0.072 0.928 24 H 0.065 0.935 25 H 0.071 0.929 26 H 0.074 0.926 27 H 0.046 0.954 28 H 0.080 0.920 29 H 0.103 0.897 30 H 0.061 0.939 31 H 0.099 0.901 32 H 0.185 0.815 33 H 0.205 0.795 34 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 1.449 1.689 -9.668 9.921 hybrid contribution 0.349 -0.655 0.179 0.764 sum 1.799 1.034 -9.489 9.713 Atomic orbital electron populations 1.21662 0.94528 1.02071 1.01311 1.21307 0.96896 0.95785 1.00766 1.21784 0.94710 0.97532 0.99624 1.22243 0.95638 0.82777 0.99730 1.42917 1.55664 1.12944 1.00607 1.18703 1.35912 1.00167 0.92232 0.89817 1.25888 0.97333 0.98204 0.93866 1.69967 1.36658 1.42767 0.99480 0.86468 0.80866 0.80579 0.78958 1.18312 1.19428 1.18972 1.19330 0.93894 0.93657 0.82361 1.21166 1.04338 0.96090 1.00083 1.21648 0.93656 0.98947 0.88512 1.20412 1.10629 0.98283 0.88721 1.98344 1.96407 1.86520 1.19072 1.22178 0.96289 0.94316 0.88280 1.42614 1.27846 1.17621 1.02622 1.97374 1.62709 1.11065 1.94864 0.91103 0.92823 0.93535 0.92947 0.92635 0.95422 0.91998 0.89701 0.93865 0.90147 0.81545 0.79541 0.79815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.37 9.91 71.98 0.71 -3.66 16 2 C -0.11 -4.18 5.93 30.59 0.18 -4.00 16 3 C -0.10 -4.46 4.62 30.60 0.14 -4.31 16 4 C 0.12 5.68 3.75 86.38 0.32 6.01 16 5 N -0.43 -20.59 2.05 -517.75 -1.06 -21.65 16 6 C -0.34 -17.21 8.17 84.04 0.69 -16.53 16 7 H 0.08 4.44 7.98 -2.91 -0.02 4.42 16 8 C 0.06 2.90 5.02 84.86 0.43 3.33 16 9 N -0.86 -44.59 13.97 21.65 0.30 -44.28 16 10 Si 0.91 39.63 26.86 68.60 1.84 41.47 16 11 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 12 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 13 H -0.26 -11.77 6.01 99.48 0.60 -11.18 16 14 C 0.34 14.52 7.24 133.00 0.96 15.48 16 15 C -0.19 -6.58 9.33 22.52 0.21 -6.37 16 16 C 0.00 -0.07 9.97 22.47 0.22 0.16 16 17 C -0.15 -3.90 6.35 22.45 0.14 -3.76 16 18 Cl -0.03 -0.67 28.99 -2.72 -0.08 -0.75 16 19 C 0.14 4.51 10.49 84.68 0.89 5.39 16 20 N -0.21 -8.84 3.59 -192.93 -0.69 -9.53 16 21 O -0.61 -30.85 13.07 -38.78 -0.51 -31.36 16 22 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 23 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 24 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 25 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 26 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 27 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 28 H 0.06 3.07 6.27 -2.38 -0.01 3.05 16 29 H 0.09 4.32 5.92 -2.39 -0.01 4.31 16 30 H 0.04 2.11 5.02 -2.39 -0.01 2.10 16 31 H 0.29 13.86 8.31 -92.71 -0.77 13.09 16 32 H 0.17 5.67 7.02 -2.92 -0.02 5.65 16 33 H 0.19 3.21 8.06 -2.91 -0.02 3.19 16 34 H 0.18 5.33 8.06 -2.91 -0.02 5.31 16 Total: -1.00 -60.66 295.01 5.70 -54.96 By element: Atomic # 1 Polarization: 18.40 SS G_CDS: 0.99 Total: 19.40 kcal Atomic # 6 Polarization: -13.16 SS G_CDS: 4.90 Total: -8.26 kcal Atomic # 7 Polarization: -74.01 SS G_CDS: -1.45 Total: -75.46 kcal Atomic # 8 Polarization: -30.85 SS G_CDS: -0.51 Total: -31.36 kcal Atomic # 14 Polarization: 39.63 SS G_CDS: 1.84 Total: 41.47 kcal Atomic # 17 Polarization: -0.67 SS G_CDS: -0.08 Total: -0.75 kcal Total: -60.66 5.70 -54.96 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167132248.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.726 kcal (2) G-P(sol) polarization free energy of solvation -60.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.962 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds