Wall clock time and date at job start Mon Mar 30 2020 01:26:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.36043 * 116.99964 * 2 1 4 4 C 1.38277 * 120.49190 * 359.97438 * 3 2 1 5 5 N 1.32052 * 120.77864 * 180.02562 * 4 3 2 6 6 C 1.32024 * 121.92341 * 0.02562 * 5 4 3 7 7 Cl 1.73596 * 119.55020 * 180.02562 * 6 5 4 8 8 C 1.38164 * 120.90354 * 359.97150 * 6 5 4 9 9 C 1.39246 * 119.11056 * 0.28083 * 8 6 5 10 10 N 1.39450 * 120.86499 * 179.74309 * 9 8 6 11 11 C 1.46498 * 120.00241 * 359.97438 * 10 9 8 12 12 C 1.52995 * 109.47519 * 180.02562 * 11 10 9 13 13 C 1.52999 * 109.47490 * 180.02562 * 12 11 10 14 14 C 1.50699 * 109.47300 * 180.02562 * 13 12 11 15 15 H 1.08000 * 120.00002 * 359.97438 * 14 13 12 16 16 C 1.37874 * 120.00214 * 180.02562 * 14 13 12 17 17 N 1.31517 * 119.99915 * 359.97438 * 16 14 13 18 18 Si 1.86804 * 120.00273 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.46925 * 89.99481 * 18 16 14 20 20 H 1.48493 * 109.47161 * 210.00026 * 18 16 14 21 21 H 1.48497 * 109.47162 * 330.00045 * 18 16 14 22 22 H 1.09005 * 109.47460 * 180.02562 * 1 2 3 23 23 H 1.08995 * 109.47017 * 300.00389 * 1 2 3 24 24 H 1.09002 * 109.47324 * 60.00021 * 1 2 3 25 25 H 1.07997 * 119.60990 * 0.02562 * 4 3 2 26 26 H 1.08002 * 120.44044 * 179.97438 * 8 6 5 27 27 H 0.97003 * 119.99910 * 180.02562 * 10 9 8 28 28 H 1.09001 * 109.47620 * 300.00421 * 11 10 9 29 29 H 1.09005 * 109.47012 * 59.99930 * 11 10 9 30 30 H 1.09001 * 109.46957 * 300.00752 * 12 11 10 31 31 H 1.09005 * 109.47097 * 59.99906 * 12 11 10 32 32 H 1.08997 * 109.47032 * 300.00266 * 13 12 11 33 33 H 1.08997 * 109.46732 * 60.00283 * 13 12 11 34 34 H 0.96993 * 120.00178 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0466 1.2122 0.0000 4 6 1.3035 2.3783 -0.0005 5 7 1.8971 3.5578 -0.0010 6 6 3.2119 3.6777 -0.0016 7 17 3.9274 5.2594 -0.0015 8 6 4.0262 2.5616 -0.0010 9 6 3.4427 1.2973 -0.0059 10 7 4.2298 0.1461 -0.0108 11 6 5.6905 0.2575 -0.0116 12 6 6.3087 -1.1420 -0.0180 13 6 7.8343 -1.0258 -0.0182 14 6 8.4431 -2.4042 -0.0252 15 1 7.8058 -3.2761 -0.0287 16 6 9.8139 -2.5525 -0.0260 17 7 10.5901 -1.4908 -0.0212 18 14 10.5687 -4.2612 -0.0339 19 1 10.7684 -4.7076 -1.4361 20 1 11.8778 -4.2273 0.6661 21 1 9.6597 -5.2071 0.6619 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 0.2249 2.3236 -0.0005 26 1 5.1009 2.6684 -0.0019 27 1 3.8100 -0.7284 -0.0146 28 1 6.0131 0.8008 -0.8997 29 1 6.0145 0.7941 0.8802 30 1 5.9861 -1.6858 0.8699 31 1 5.9847 -1.6783 -0.9101 32 1 8.1571 -0.4819 -0.9059 33 1 8.1578 -0.4898 0.8740 34 1 11.5544 -1.5950 -0.0222 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168427257.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:38 Heat of formation + Delta-G solvation = -42.855284 kcal Electronic energy + Delta-G solvation = -17585.286760 eV Core-core repulsion = 14543.030322 eV Total energy + Delta-G solvation = -3042.256438 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.088 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.75567 -39.10249 -38.08527 -37.38684 -35.67468 -33.70826 -31.50921 -31.02086 -28.37410 -28.17624 -25.29765 -24.03189 -23.22052 -22.09860 -19.26986 -18.75685 -18.48063 -17.98208 -16.92615 -16.54116 -16.25860 -15.88261 -15.82305 -15.57011 -15.13590 -14.99111 -14.34151 -14.00348 -13.69267 -13.38604 -12.99895 -12.76893 -12.74661 -12.51308 -12.35375 -12.24884 -12.10468 -11.91082 -11.49181 -11.37539 -11.20350 -10.63544 -10.54993 -9.74513 -8.59418 -8.20121 -6.30794 -0.05360 0.30238 0.84207 1.41559 1.42099 1.53082 2.13271 2.32440 2.43124 2.62292 3.13988 3.47582 3.72670 3.94629 4.09524 4.20642 4.23009 4.42353 4.46116 4.49760 4.54126 4.59821 4.81291 4.93961 4.97393 5.15279 5.24961 5.50328 5.71536 5.84193 5.86905 6.22870 6.30079 6.61932 6.75897 6.86105 7.38673 8.91626 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.021144 B = 0.003643 C = 0.003119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.960319 B = 7683.399110 C = 8976.304757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.326 6.326 3 C 0.004 3.996 4 C 0.071 3.929 5 N -0.509 5.509 6 C 0.176 3.824 7 Cl -0.033 7.033 8 C -0.216 4.216 9 C 0.235 3.765 10 N -0.716 5.716 11 C 0.129 3.871 12 C -0.104 4.104 13 C 0.026 3.974 14 C -0.544 4.544 15 H 0.061 0.939 16 C 0.001 3.999 17 N -0.932 5.932 18 Si 0.963 3.037 19 H -0.273 1.273 20 H -0.283 1.283 21 H -0.263 1.263 22 H 0.119 0.881 23 H 0.069 0.931 24 H 0.069 0.931 25 H 0.195 0.805 26 H 0.150 0.850 27 H 0.413 0.587 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.060 0.940 32 H -0.003 1.003 33 H -0.003 1.003 34 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.925 6.299 0.039 21.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.239 6.239 3 C -0.047 4.047 4 C -0.085 4.085 5 N -0.225 5.225 6 C 0.011 3.989 7 Cl -0.005 7.005 8 C -0.243 4.243 9 C 0.121 3.879 10 N -0.345 5.345 11 C 0.006 3.994 12 C -0.142 4.142 13 C -0.012 4.012 14 C -0.582 4.582 15 H 0.079 0.921 16 C -0.197 4.197 17 N -0.572 5.572 18 Si 0.787 3.213 19 H -0.199 1.199 20 H -0.209 1.209 21 H -0.187 1.187 22 H 0.138 0.862 23 H 0.088 0.912 24 H 0.088 0.912 25 H 0.212 0.788 26 H 0.168 0.832 27 H 0.250 0.750 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.016 0.984 33 H 0.016 0.984 34 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -20.919 7.026 0.044 22.068 hybrid contribution 1.115 -1.347 -0.015 1.749 sum -19.804 5.679 0.029 20.602 Atomic orbital electron populations 1.23408 0.75788 1.05925 1.02620 1.86021 1.23826 1.24683 1.89387 1.19536 0.90608 0.87438 1.07154 1.22880 1.01264 0.84655 0.99682 1.66933 1.10163 1.28000 1.17446 1.21186 0.89792 0.87034 1.00879 1.98382 1.81178 1.24322 1.96623 1.21177 1.01867 0.89141 1.12153 1.17541 0.87958 0.88108 0.94342 1.44671 1.05139 1.05697 1.78985 1.21442 0.78200 0.98552 1.01230 1.21566 0.96295 0.94774 1.01553 1.18925 0.90973 0.95843 0.95442 1.21675 0.92106 0.93797 1.50589 0.92084 1.25940 0.98073 1.00920 0.94771 1.70083 1.04540 1.30974 1.51600 0.85481 0.77739 0.79605 0.78438 1.19868 1.20897 1.18735 0.86250 0.91246 0.91240 0.78804 0.83183 0.75007 0.92042 0.92035 0.92140 0.92114 0.98439 0.98426 0.92771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.82 113.37 1.11 1.28 16 2 O -0.33 -6.48 9.86 -94.03 -0.93 -7.41 16 3 C 0.00 0.10 6.73 22.67 0.15 0.26 16 4 C 0.07 1.49 10.21 84.67 0.86 2.36 16 5 N -0.51 -13.28 10.33 -186.63 -1.93 -15.21 16 6 C 0.18 4.75 7.27 84.65 0.62 5.36 16 7 Cl -0.03 -0.83 29.10 -2.72 -0.08 -0.91 16 8 C -0.22 -5.85 9.15 22.49 0.21 -5.64 16 9 C 0.24 6.29 6.71 38.57 0.26 6.55 16 10 N -0.72 -19.54 5.72 -338.50 -1.94 -21.48 16 11 C 0.13 4.05 4.95 86.38 0.43 4.48 16 12 C -0.10 -3.90 5.27 30.59 0.16 -3.74 16 13 C 0.03 1.29 4.97 29.85 0.15 1.44 16 14 C -0.54 -29.97 9.11 25.60 0.23 -29.74 16 15 H 0.06 3.21 7.74 -2.91 -0.02 3.19 16 16 C 0.00 0.05 5.46 84.65 0.46 0.51 16 17 N -0.93 -55.67 13.29 21.45 0.28 -55.38 16 18 Si 0.96 43.37 29.54 68.60 2.03 45.40 16 19 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 20 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 21 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 22 H 0.12 0.81 8.14 -2.38 -0.02 0.79 16 23 H 0.07 0.55 7.68 -2.39 -0.02 0.53 16 24 H 0.07 0.55 7.68 -2.39 -0.02 0.53 16 25 H 0.20 2.63 6.31 -2.91 -0.02 2.61 16 26 H 0.15 3.97 6.90 -2.91 -0.02 3.95 16 27 H 0.41 10.56 7.94 -92.71 -0.74 9.83 16 28 H 0.06 1.94 8.00 -2.39 -0.02 1.92 16 29 H 0.06 1.94 8.00 -2.38 -0.02 1.92 16 30 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 31 H 0.06 2.21 8.14 -2.38 -0.02 2.19 16 32 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 33 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 34 H 0.26 14.82 8.31 -92.71 -0.77 14.05 16 Total: -1.00 -64.64 308.07 2.46 -62.17 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: 0.38 Total: 9.69 kcal Atomic # 6 Polarization: -21.52 SS G_CDS: 4.64 Total: -16.88 kcal Atomic # 7 Polarization: -88.49 SS G_CDS: -3.58 Total: -92.07 kcal Atomic # 8 Polarization: -6.48 SS G_CDS: -0.93 Total: -7.41 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.40 kcal Atomic # 17 Polarization: -0.83 SS G_CDS: -0.08 Total: -0.91 kcal Total: -64.64 2.46 -62.17 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168427257.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.319 kcal (2) G-P(sol) polarization free energy of solvation -64.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds