Wall clock time and date at job start Mon Mar 30 2020 01:26:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35995 * 117.00475 * 2 1 4 4 C 1.39258 * 120.39474 * 179.97438 * 3 2 1 5 5 C 1.38310 * 118.45940 * 180.02562 * 4 3 2 6 6 C 1.39082 * 119.15060 * 359.97438 * 5 4 3 7 7 N 1.39368 * 119.63928 * 179.97438 * 6 5 4 8 8 C 1.38337 * 120.00244 * 6.10259 * 7 6 5 9 9 C 1.38982 * 119.99988 * 61.81230 * 8 7 6 10 10 H 1.08003 * 120.00264 * 198.08302 * 9 8 7 11 11 C 1.40836 * 120.00229 * 18.08284 * 9 8 7 12 12 N 1.30337 * 119.99984 * 9.15730 * 11 9 8 13 13 Si 1.86804 * 120.00367 * 189.15225 * 11 9 8 14 14 H 1.48504 * 109.46700 * 0.02562 * 13 11 9 15 15 H 1.48506 * 109.46725 * 120.00070 * 13 11 9 16 16 H 1.48497 * 109.47406 * 240.00032 * 13 11 9 17 17 C 1.41156 * 120.00177 * 241.81410 * 8 7 6 18 18 C 1.43200 * 120.00092 * 174.69745 * 17 8 7 19 19 N 9.11633 * 140.60137 * 7.63860 * 2 1 3 20 20 C 1.43202 * 119.99772 * 354.42042 * 17 8 7 21 21 N 8.01516 * 114.17639 * 23.69895 * 2 1 3 22 22 N 1.32339 * 120.71304 * 0.25869 * 6 5 4 23 23 C 1.31956 * 121.68152 * 359.46869 * 22 6 5 24 24 H 1.09000 * 109.47572 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47281 * 300.00750 * 1 2 3 26 26 H 1.09008 * 109.46721 * 59.99674 * 1 2 3 27 27 H 1.08000 * 120.77164 * 0.02562 * 4 3 2 28 28 H 1.07993 * 120.42691 * 180.02562 * 5 4 3 29 29 H 0.97001 * 119.99224 * 186.10004 * 7 6 5 30 30 H 0.96998 * 120.00427 * 184.98394 * 12 11 9 31 31 H 1.07999 * 119.61186 * 180.29219 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 3.4366 1.2940 0.0005 5 6 4.0226 2.5468 0.0011 6 6 3.2095 3.6752 0.0005 7 7 3.7892 4.9425 0.0015 8 6 5.1604 5.0761 -0.1242 9 6 5.8001 4.6251 -1.2727 10 1 6.8666 4.4550 -1.2654 11 6 5.0576 4.3899 -2.4461 12 7 3.8100 4.7610 -2.5132 13 14 5.8608 3.5461 -3.9063 14 1 7.2735 3.2268 -3.5779 15 1 5.1295 2.2914 -4.2168 16 1 5.8179 4.4486 -5.0848 17 6 5.9098 5.6704 0.9139 18 6 7.3391 5.7065 0.8350 19 7 8.4736 5.7349 0.7691 20 6 5.2404 6.2425 2.0432 21 7 4.7115 6.6955 2.9390 22 7 1.8913 3.5583 0.0046 23 6 1.3001 2.3786 -0.0011 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 4.0431 0.4004 0.0005 28 1 5.0979 2.6477 0.0011 29 1 3.2312 5.7309 0.0904 30 1 3.2780 4.5353 -3.2923 31 1 0.2216 2.3221 -0.0022 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169075588.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:21 Heat of formation + Delta-G solvation = 49.948219 kcal Electronic energy + Delta-G solvation = -19495.967965 eV Core-core repulsion = 16356.628295 eV Total energy + Delta-G solvation = -3139.339670 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.086 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.48038 -39.64286 -38.22533 -36.88856 -36.52163 -34.95514 -33.23079 -32.27336 -29.53914 -28.81470 -28.03280 -24.27071 -24.02892 -22.58124 -20.65960 -19.04804 -18.92733 -18.50569 -17.71111 -17.50451 -16.58017 -16.47766 -15.48128 -15.30876 -14.77057 -14.67410 -14.51484 -14.32761 -14.05355 -13.86338 -13.60511 -13.38177 -13.35531 -13.20930 -13.08628 -12.69938 -12.67846 -12.60238 -12.35773 -11.99788 -11.56309 -10.99242 -10.46324 -10.28470 -9.74305 -9.13290 -8.08536 -7.13551 0.32370 0.46094 0.86849 1.37792 1.53106 1.55195 2.04925 2.08972 2.24289 2.27126 2.50879 2.60948 2.74591 3.10714 3.43238 3.79324 3.85526 3.93670 4.16498 4.38431 4.49332 4.57048 4.63845 4.68056 4.81941 4.86346 5.03145 5.16213 5.40635 5.53486 5.74999 6.05843 6.16734 6.47349 6.64757 6.84966 7.18620 7.34460 7.46486 7.71455 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.015044 B = 0.007544 C = 0.005776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1860.821303 B = 3710.764488 C = 4846.607909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.330 6.330 3 C 0.004 3.996 4 C -0.073 4.073 5 C -0.196 4.196 6 C 0.400 3.600 7 N -0.647 5.647 8 C 0.380 3.620 9 C -0.367 4.367 10 H 0.110 0.890 11 C 0.046 3.954 12 N -0.715 5.715 13 Si 0.974 3.026 14 H -0.250 1.250 15 H -0.256 1.256 16 H -0.260 1.260 17 C -0.326 4.326 18 C 0.331 3.669 19 N -0.555 5.555 20 C 0.318 3.682 21 N -0.560 5.560 22 N -0.531 5.531 23 C 0.058 3.942 24 H 0.120 0.880 25 H 0.060 0.940 26 H 0.061 0.939 27 H 0.156 0.844 28 H 0.143 0.857 29 H 0.401 0.599 30 H 0.310 0.690 31 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.704 -11.268 -6.677 15.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.244 6.244 3 C -0.045 4.045 4 C -0.099 4.099 5 C -0.221 4.221 6 C 0.165 3.835 7 N -0.272 5.272 8 C 0.275 3.725 9 C -0.395 4.395 10 H 0.128 0.872 11 C -0.185 4.185 12 N -0.333 5.333 13 Si 0.793 3.207 14 H -0.173 1.173 15 H -0.180 1.180 16 H -0.184 1.184 17 C -0.345 4.345 18 C 0.025 3.975 19 N -0.238 5.238 20 C 0.012 3.988 21 N -0.243 5.243 22 N -0.249 5.249 23 C -0.100 4.100 24 H 0.139 0.861 25 H 0.079 0.921 26 H 0.079 0.921 27 H 0.174 0.826 28 H 0.161 0.839 29 H 0.237 0.763 30 H 0.122 0.878 31 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -8.313 -9.919 -5.542 14.078 hybrid contribution -0.020 -0.378 -0.758 0.847 sum -8.333 -10.296 -6.300 14.668 Atomic orbital electron populations 1.23290 0.76929 1.05469 1.01944 1.86009 1.22929 1.25502 1.89927 1.19717 0.93062 0.85905 1.05832 1.20872 0.92074 0.98120 0.98833 1.21573 1.01750 0.91129 1.07653 1.18011 0.88028 0.85537 0.91892 1.41020 1.04594 1.04779 1.76817 1.16662 0.80175 0.86826 0.88814 1.20554 0.97796 1.28964 0.92140 0.87246 1.27046 0.95036 0.93665 1.02763 1.69550 1.08244 1.24627 1.30881 0.85167 0.80436 0.78855 0.76220 1.17270 1.17965 1.18388 1.12986 0.83138 1.37926 1.00429 1.24806 0.91365 0.90223 0.91152 1.81086 1.12613 1.18351 1.11777 1.25256 0.92019 0.90328 0.91226 1.80991 1.10405 1.19091 1.13844 1.66916 1.10278 1.28197 1.19468 1.22796 1.00717 0.85970 1.00494 0.86136 0.92117 0.92084 0.82636 0.83894 0.76303 0.87763 0.80731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.82 113.37 1.11 1.40 16 2 O -0.33 -8.27 10.51 -93.49 -0.98 -9.26 16 3 C 0.00 0.11 6.71 22.58 0.15 0.26 16 4 C -0.07 -2.22 10.12 22.53 0.23 -2.00 16 5 C -0.20 -6.91 8.58 22.49 0.19 -6.72 16 6 C 0.40 15.20 6.01 132.94 0.80 16.00 16 7 N -0.65 -25.72 3.31 -184.62 -0.61 -26.33 16 8 C 0.38 15.52 4.93 39.01 0.19 15.71 16 9 C -0.37 -14.26 7.05 23.08 0.16 -14.10 16 10 H 0.11 4.29 6.95 -2.91 -0.02 4.27 16 11 C 0.05 1.65 4.77 85.55 0.41 2.05 16 12 N -0.72 -26.29 10.79 21.98 0.24 -26.05 16 13 Si 0.97 28.00 29.58 68.60 2.03 30.03 16 14 H -0.25 -7.32 7.11 99.48 0.71 -6.61 16 15 H -0.26 -7.15 7.11 99.48 0.71 -6.44 16 16 H -0.26 -7.35 7.11 99.48 0.71 -6.64 16 17 C -0.33 -14.20 5.88 -20.07 -0.12 -14.32 16 18 C 0.33 14.95 13.88 88.32 1.23 16.18 16 19 N -0.55 -25.96 18.54 19.01 0.35 -25.60 16 20 C 0.32 14.63 14.82 88.35 1.31 15.94 16 21 N -0.56 -26.98 18.53 18.99 0.35 -26.63 16 22 N -0.53 -19.38 10.39 -192.68 -2.00 -21.38 16 23 C 0.06 1.74 10.21 84.74 0.87 2.61 16 24 H 0.12 1.26 8.14 -2.39 -0.02 1.24 16 25 H 0.06 0.87 7.68 -2.39 -0.02 0.85 16 26 H 0.06 0.86 7.67 -2.38 -0.02 0.84 16 27 H 0.16 3.95 8.06 -2.91 -0.02 3.92 16 28 H 0.14 5.09 6.22 -2.91 -0.02 5.07 16 29 H 0.40 16.30 8.94 -92.71 -0.83 15.47 16 30 H 0.31 10.39 8.29 -92.71 -0.77 9.62 16 31 H 0.18 4.07 6.30 -2.91 -0.02 4.05 16 Total: -1.00 -52.87 294.01 6.29 -46.58 By element: Atomic # 1 Polarization: 25.26 SS G_CDS: 0.39 Total: 25.64 kcal Atomic # 6 Polarization: 26.48 SS G_CDS: 6.53 Total: 33.01 kcal Atomic # 7 Polarization: -124.33 SS G_CDS: -1.67 Total: -126.00 kcal Atomic # 8 Polarization: -8.27 SS G_CDS: -0.98 Total: -9.26 kcal Atomic # 14 Polarization: 28.00 SS G_CDS: 2.03 Total: 30.03 kcal Total: -52.87 6.29 -46.58 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169075588.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.525 kcal (2) G-P(sol) polarization free energy of solvation -52.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.577 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds