Wall clock time and date at job start Mon Mar 30 2020 00:51:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38815 * 120.74231 * 2 1 4 4 C 1.38108 * 119.32284 * 179.97438 * 3 2 1 5 5 N 1.31998 * 120.84349 * 359.97438 * 4 3 2 6 6 O 1.41600 * 119.19400 * 179.97438 * 5 4 3 7 7 C 1.32477 * 121.60920 * 0.02562 * 5 4 3 8 8 N 1.39371 * 119.70057 * 179.97438 * 7 5 4 9 9 C 1.38348 * 119.99925 * 174.21862 * 8 7 5 10 10 C 1.38984 * 119.99741 * 300.27991 * 9 8 7 11 11 H 1.08005 * 119.99722 * 152.26379 * 10 9 8 12 12 C 1.40835 * 120.00569 * 332.26426 * 10 9 8 13 13 N 1.30334 * 119.99716 * 2.89441 * 12 10 9 14 14 Si 1.86800 * 120.00230 * 182.89799 * 12 10 9 15 15 H 1.48504 * 109.46956 * 89.99726 * 14 12 10 16 16 H 1.48500 * 109.47101 * 209.99800 * 14 12 10 17 17 H 1.48504 * 109.47185 * 329.99937 * 14 12 10 18 18 C 1.41149 * 120.00154 * 120.28551 * 9 8 7 19 19 C 1.43196 * 120.00122 * 174.75873 * 18 9 8 20 20 N 6.97413 * 100.09193 * 184.88862 * 2 1 3 21 21 C 1.43203 * 119.99682 * 354.47552 * 18 9 8 22 22 N 6.12772 * 125.14881 * 217.77086 * 2 1 3 23 23 C 1.38398 * 120.74824 * 180.25319 * 2 1 3 24 24 H 1.08997 * 109.46719 * 95.00266 * 1 2 3 25 25 H 1.09009 * 109.47015 * 214.99668 * 1 2 3 26 26 H 1.08992 * 109.47391 * 334.99634 * 1 2 3 27 27 H 1.08003 * 120.33886 * 359.95272 * 3 2 1 28 28 H 1.08011 * 119.58013 * 179.97438 * 4 3 2 29 29 H 0.96998 * 120.00184 * 354.21923 * 8 7 5 30 30 H 0.97005 * 119.99737 * 185.00712 * 13 12 10 31 31 H 1.08000 * 120.44183 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2166 1.1931 0.0000 4 6 3.5972 1.1589 0.0005 5 7 4.2457 0.0092 0.0016 6 8 5.6617 0.0148 0.0015 7 6 3.6041 -1.1499 0.0016 8 7 4.3288 -2.3403 0.0022 9 6 3.6703 -3.5510 0.1229 10 6 2.8974 -3.8124 1.2480 11 1 2.0600 -4.4914 1.1820 12 6 3.2060 -3.1921 2.4741 13 7 4.1811 -2.3299 2.5410 14 14 2.2178 -3.6050 4.0047 15 1 2.8505 -4.7494 4.7086 16 1 2.1859 -2.4256 4.9064 17 1 0.8315 -3.9685 3.6157 18 6 3.7834 -4.5207 -0.8965 19 6 3.1954 -5.8147 -0.7222 20 7 2.7290 -6.8412 -0.5851 21 6 4.4811 -4.2085 -2.1074 22 7 5.0347 -3.9605 -3.0689 23 6 2.2145 -1.1894 -0.0053 24 1 -0.3633 -0.0896 -1.0237 25 1 -0.3633 -0.8419 0.5894 26 1 -0.3634 0.9313 0.4343 27 1 1.6943 2.1384 -0.0008 28 1 4.1535 2.0847 0.0001 29 1 5.2949 -2.3200 -0.0821 30 1 4.4411 -1.9573 3.3980 31 1 1.6941 -2.1357 -0.0099 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169079189.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:37 Heat of formation + Delta-G solvation = 114.423390 kcal Electronic energy + Delta-G solvation = -19883.121865 eV Core-core repulsion = 16746.578048 eV Total energy + Delta-G solvation = -3136.543817 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.086 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.87512 -37.65284 -35.43302 -34.99796 -34.80615 -33.70306 -31.32630 -30.24891 -28.90955 -27.37142 -27.00707 -23.88765 -22.08211 -21.27709 -19.14054 -17.69103 -17.54411 -16.84122 -16.35556 -15.77134 -15.11721 -14.84137 -14.34386 -13.86613 -13.83706 -13.27334 -12.95501 -12.69224 -12.56880 -12.40033 -12.01598 -11.83221 -11.75820 -11.71003 -11.64079 -11.34283 -11.17000 -11.04224 -10.89560 -10.28350 -10.22024 -10.12997 -8.57071 -8.47570 -8.05134 -7.76065 -7.02863 -5.62607 1.17534 1.28641 2.07444 2.61783 2.70086 2.72986 3.00385 3.30361 3.73787 3.77741 3.88118 3.95968 4.09846 4.27126 4.71760 4.85111 5.01061 5.12769 5.21472 5.42187 5.44288 5.58219 5.80959 5.84533 6.02475 6.11304 6.18549 6.39320 6.53372 6.78854 6.95770 7.27881 7.44327 7.59951 7.74244 8.15847 8.34140 8.84153 8.99742 9.13224 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.012552 B = 0.009588 C = 0.007257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2230.120188 B = 2919.640380 C = 3857.232379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.013 4.013 3 C -0.205 4.205 4 C 0.116 3.884 5 N -0.174 5.174 6 O -0.582 6.582 7 C 0.440 3.560 8 N -0.620 5.620 9 C 0.374 3.626 10 C -0.384 4.384 11 H 0.117 0.883 12 C 0.064 3.936 13 N -0.719 5.719 14 Si 0.929 3.071 15 H -0.256 1.256 16 H -0.267 1.267 17 H -0.247 1.247 18 C -0.294 4.294 19 C 0.326 3.674 20 N -0.523 5.523 21 C 0.303 3.697 22 N -0.519 5.519 23 C -0.185 4.185 24 H 0.079 0.921 25 H 0.076 0.924 26 H 0.070 0.930 27 H 0.148 0.852 28 H 0.170 0.830 29 H 0.420 0.580 30 H 0.305 0.695 31 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.255 8.670 5.090 14.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.021 4.021 3 C -0.228 4.228 4 C -0.029 4.029 5 N 0.133 4.867 6 O -0.631 6.631 7 C 0.211 3.789 8 N -0.245 5.245 9 C 0.270 3.730 10 C -0.412 4.412 11 H 0.134 0.866 12 C -0.168 4.168 13 N -0.337 5.337 14 Si 0.750 3.250 15 H -0.180 1.180 16 H -0.192 1.192 17 H -0.170 1.170 18 C -0.312 4.312 19 C 0.017 3.983 20 N -0.205 5.205 21 C -0.006 4.006 22 N -0.201 5.201 23 C -0.209 4.209 24 H 0.098 0.902 25 H 0.095 0.905 26 H 0.089 0.911 27 H 0.166 0.834 28 H 0.187 0.813 29 H 0.261 0.739 30 H 0.118 0.882 31 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -9.558 7.555 3.945 12.806 hybrid contribution 0.569 0.331 1.154 1.329 sum -8.989 7.885 5.100 12.999 Atomic orbital electron populations 1.20807 0.89720 1.03408 1.03141 1.20162 0.96980 0.91982 0.92963 1.21195 0.92081 0.99303 1.10223 1.22181 0.92844 0.90787 0.97064 1.42715 1.11658 1.01482 1.30862 1.97547 0.76190 1.97404 1.91914 1.17757 0.88769 0.81363 0.90965 1.41643 1.10230 1.00657 1.71936 1.16818 0.85671 0.81123 0.89388 1.20341 1.11368 1.18172 0.91369 0.86553 1.26594 0.95248 0.92207 1.02719 1.69570 1.18566 1.14997 1.30616 0.85862 0.80950 0.79848 0.78317 1.18033 1.19156 1.16997 1.12918 1.30713 0.92012 0.95513 1.24551 0.90848 0.91038 0.91858 1.81069 1.16783 1.12450 1.10203 1.25223 0.91141 0.92535 0.91686 1.81126 1.16764 1.09442 1.12735 1.21245 0.89863 1.00957 1.08811 0.90230 0.90463 0.91066 0.83397 0.81258 0.73857 0.88228 0.81600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.98 10.06 36.00 0.36 -0.62 16 2 C -0.01 -0.17 5.91 -104.35 -0.62 -0.78 16 3 C -0.21 -2.44 9.79 -39.42 -0.39 -2.82 16 4 C 0.12 1.80 10.69 -17.53 -0.19 1.62 16 5 N -0.17 -3.58 3.59 -12.33 -0.04 -3.62 16 6 O -0.58 -15.32 19.06 -11.47 -0.22 -15.54 16 7 C 0.44 8.60 6.08 -154.64 -0.94 7.66 16 8 N -0.62 -13.02 3.25 -9.69 -0.03 -13.05 16 9 C 0.37 7.55 4.96 -83.54 -0.41 7.13 16 10 C -0.38 -7.25 6.52 -38.32 -0.25 -7.50 16 11 H 0.12 2.11 7.28 -52.48 -0.38 1.73 16 12 C 0.06 1.15 5.21 -17.21 -0.09 1.06 16 13 N -0.72 -14.15 10.92 55.60 0.61 -13.54 16 14 Si 0.93 13.96 29.57 -169.99 -5.03 8.93 16 15 H -0.26 -4.01 7.11 56.52 0.40 -3.61 16 16 H -0.27 -3.98 7.11 56.52 0.40 -3.58 16 17 H -0.25 -3.59 7.11 56.52 0.40 -3.19 16 18 C -0.29 -6.21 5.88 -104.94 -0.62 -6.83 16 19 C 0.33 7.06 14.05 -22.48 -0.32 6.74 16 20 N -0.52 -11.77 18.54 41.83 0.78 -11.00 16 21 C 0.30 6.87 14.83 -22.45 -0.33 6.54 16 22 N -0.52 -12.50 18.54 41.87 0.78 -11.73 16 23 C -0.19 -2.95 8.50 -39.24 -0.33 -3.28 16 24 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 25 H 0.08 0.64 8.13 -51.92 -0.42 0.22 16 26 H 0.07 0.47 8.07 -51.93 -0.42 0.05 16 27 H 0.15 1.17 8.06 -52.48 -0.42 0.74 16 28 H 0.17 2.21 8.06 -52.48 -0.42 1.78 16 29 H 0.42 9.71 7.94 -40.82 -0.32 9.39 16 30 H 0.31 5.62 8.29 -40.82 -0.34 5.28 16 31 H 0.17 2.55 6.14 -52.49 -0.32 2.23 16 LS Contribution 297.38 15.07 4.48 4.48 Total: -1.00 -29.84 297.38 -5.07 -34.92 By element: Atomic # 1 Polarization: 13.51 SS G_CDS: -2.27 Total: 11.24 kcal Atomic # 6 Polarization: 13.03 SS G_CDS: -4.12 Total: 8.91 kcal Atomic # 7 Polarization: -55.02 SS G_CDS: 2.08 Total: -52.94 kcal Atomic # 8 Polarization: -15.32 SS G_CDS: -0.22 Total: -15.54 kcal Atomic # 14 Polarization: 13.96 SS G_CDS: -5.03 Total: 8.93 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -29.84 -5.07 -34.92 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169079189.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.342 kcal (2) G-P(sol) polarization free energy of solvation -29.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.918 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds