Wall clock time and date at job start Mon Mar 30 2020 00:51:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38815 * 120.74231 * 2 1 4 4 C 1.38108 * 119.32284 * 179.97438 * 3 2 1 5 5 N 1.31998 * 120.84349 * 359.97438 * 4 3 2 6 6 O 1.41600 * 119.19400 * 179.97438 * 5 4 3 7 7 C 1.32477 * 121.60920 * 0.02562 * 5 4 3 8 8 N 1.39371 * 119.70057 * 179.97438 * 7 5 4 9 9 C 1.38348 * 119.99925 * 174.21862 * 8 7 5 10 10 C 1.38984 * 119.99741 * 300.27991 * 9 8 7 11 11 H 1.08005 * 119.99722 * 152.26379 * 10 9 8 12 12 C 1.40835 * 120.00569 * 332.26426 * 10 9 8 13 13 N 1.30334 * 119.99716 * 2.89441 * 12 10 9 14 14 Si 1.86800 * 120.00230 * 182.89799 * 12 10 9 15 15 H 1.48504 * 109.46956 * 89.99726 * 14 12 10 16 16 H 1.48500 * 109.47101 * 209.99800 * 14 12 10 17 17 H 1.48504 * 109.47185 * 329.99937 * 14 12 10 18 18 C 1.41149 * 120.00154 * 120.28551 * 9 8 7 19 19 C 1.43196 * 120.00122 * 174.75873 * 18 9 8 20 20 N 6.97413 * 100.09193 * 184.88862 * 2 1 3 21 21 C 1.43203 * 119.99682 * 354.47552 * 18 9 8 22 22 N 6.12772 * 125.14881 * 217.77086 * 2 1 3 23 23 C 1.38398 * 120.74824 * 180.25319 * 2 1 3 24 24 H 1.08997 * 109.46719 * 95.00266 * 1 2 3 25 25 H 1.09009 * 109.47015 * 214.99668 * 1 2 3 26 26 H 1.08992 * 109.47391 * 334.99634 * 1 2 3 27 27 H 1.08003 * 120.33886 * 359.95272 * 3 2 1 28 28 H 1.08011 * 119.58013 * 179.97438 * 4 3 2 29 29 H 0.96998 * 120.00184 * 354.21923 * 8 7 5 30 30 H 0.97005 * 119.99737 * 185.00712 * 13 12 10 31 31 H 1.08000 * 120.44183 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2166 1.1931 0.0000 4 6 3.5972 1.1589 0.0005 5 7 4.2457 0.0092 0.0016 6 8 5.6617 0.0148 0.0015 7 6 3.6041 -1.1499 0.0016 8 7 4.3288 -2.3403 0.0022 9 6 3.6703 -3.5510 0.1229 10 6 2.8974 -3.8124 1.2480 11 1 2.0600 -4.4914 1.1820 12 6 3.2060 -3.1921 2.4741 13 7 4.1811 -2.3299 2.5410 14 14 2.2178 -3.6050 4.0047 15 1 2.8505 -4.7494 4.7086 16 1 2.1859 -2.4256 4.9064 17 1 0.8315 -3.9685 3.6157 18 6 3.7834 -4.5207 -0.8965 19 6 3.1954 -5.8147 -0.7222 20 7 2.7290 -6.8412 -0.5851 21 6 4.4811 -4.2085 -2.1074 22 7 5.0347 -3.9605 -3.0689 23 6 2.2145 -1.1894 -0.0053 24 1 -0.3633 -0.0896 -1.0237 25 1 -0.3633 -0.8419 0.5894 26 1 -0.3634 0.9313 0.4343 27 1 1.6943 2.1384 -0.0008 28 1 4.1535 2.0847 0.0001 29 1 5.2949 -2.3200 -0.0821 30 1 4.4411 -1.9573 3.3980 31 1 1.6941 -2.1357 -0.0099 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169079189.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:36 Heat of formation + Delta-G solvation = 96.792498 kcal Electronic energy + Delta-G solvation = -19883.886398 eV Core-core repulsion = 16746.578048 eV Total energy + Delta-G solvation = -3137.308350 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.086 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.18654 -39.16300 -37.11747 -36.60322 -36.18210 -35.18434 -32.80207 -31.65022 -30.29236 -28.93813 -28.18573 -25.17823 -23.38462 -22.67246 -20.72322 -19.12495 -19.04055 -18.20171 -17.80144 -17.02941 -16.47802 -16.21840 -15.58919 -15.21568 -14.95636 -14.65746 -14.43418 -14.02326 -13.91805 -13.59374 -13.51819 -13.41190 -13.36802 -13.10269 -12.79248 -12.78810 -12.68241 -12.37099 -12.12395 -11.73576 -11.55490 -11.29536 -10.33475 -9.98844 -9.63035 -9.24567 -8.55989 -7.24780 -0.02968 0.00470 0.65751 1.37306 1.49053 1.56886 1.67600 1.98859 2.05872 2.16871 2.28412 2.50857 2.58401 2.65173 3.29606 3.61762 3.77313 3.78873 3.97468 4.21775 4.44629 4.52792 4.62737 4.78778 4.90997 4.99295 5.20029 5.25660 5.37976 5.45674 5.52840 5.82980 5.95754 6.06904 6.20253 6.60102 6.78603 7.10297 7.27316 7.68971 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.012552 B = 0.009588 C = 0.007257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2230.120188 B = 2919.640380 C = 3857.232379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.007 3.993 3 C -0.173 4.173 4 C 0.098 3.902 5 N -0.202 5.202 6 O -0.649 6.649 7 C 0.417 3.583 8 N -0.636 5.636 9 C 0.369 3.631 10 C -0.367 4.367 11 H 0.128 0.872 12 C 0.038 3.962 13 N -0.740 5.740 14 Si 0.990 3.010 15 H -0.265 1.265 16 H -0.262 1.262 17 H -0.231 1.231 18 C -0.309 4.309 19 C 0.334 3.666 20 N -0.541 5.541 21 C 0.310 3.690 22 N -0.557 5.557 23 C -0.197 4.197 24 H 0.096 0.904 25 H 0.083 0.917 26 H 0.103 0.897 27 H 0.205 0.795 28 H 0.187 0.813 29 H 0.402 0.598 30 H 0.309 0.691 31 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.032 10.310 6.703 18.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.001 4.001 3 C -0.195 4.195 4 C -0.045 4.045 5 N 0.103 4.897 6 O -0.697 6.697 7 C 0.190 3.810 8 N -0.259 5.259 9 C 0.264 3.736 10 C -0.395 4.395 11 H 0.145 0.855 12 C -0.191 4.191 13 N -0.358 5.358 14 Si 0.807 3.193 15 H -0.190 1.190 16 H -0.186 1.186 17 H -0.153 1.153 18 C -0.328 4.328 19 C 0.027 3.973 20 N -0.224 5.224 21 C 0.004 3.996 22 N -0.240 5.240 23 C -0.221 4.221 24 H 0.115 0.885 25 H 0.102 0.898 26 H 0.121 0.879 27 H 0.221 0.779 28 H 0.204 0.796 29 H 0.240 0.760 30 H 0.122 0.878 31 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -13.356 9.235 5.537 17.156 hybrid contribution 1.571 0.010 0.760 1.745 sum -11.785 9.246 6.297 16.249 Atomic orbital electron populations 1.20992 0.85927 1.05500 1.04621 1.20786 0.99391 0.90702 0.89216 1.21859 0.90203 1.01429 1.05971 1.22899 0.94773 0.90189 0.96621 1.42783 1.09994 1.03103 1.33776 1.97487 0.80167 1.97788 1.94260 1.18236 0.89914 0.80698 0.92180 1.41617 1.09341 1.01554 1.73401 1.16894 0.86103 0.81082 0.89489 1.20653 1.10653 1.17099 0.91069 0.85462 1.27376 0.95491 0.91511 1.04706 1.69663 1.19269 1.15387 1.31513 0.84998 0.80194 0.79296 0.74794 1.18973 1.18574 1.15284 1.12926 1.31971 0.92388 0.95534 1.24532 0.90477 0.90867 0.91448 1.81062 1.17842 1.12696 1.10795 1.25507 0.90701 0.91743 0.91658 1.81099 1.18422 1.10509 1.13924 1.21489 0.88290 1.02783 1.09531 0.88520 0.89835 0.87871 0.77854 0.79620 0.76024 0.87825 0.81346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.28 10.06 71.23 0.72 -0.56 16 2 C 0.01 0.14 5.91 -19.69 -0.12 0.03 16 3 C -0.17 -3.32 9.79 22.38 0.22 -3.10 16 4 C 0.10 2.89 10.69 84.64 0.90 3.80 16 5 N -0.20 -8.48 3.59 -192.92 -0.69 -9.17 16 6 O -0.65 -36.23 19.06 -38.78 -0.74 -36.97 16 7 C 0.42 16.51 6.08 132.88 0.81 17.32 16 8 N -0.64 -27.85 3.25 -184.57 -0.60 -28.45 16 9 C 0.37 15.16 4.96 39.01 0.19 15.36 16 10 C -0.37 -13.55 6.52 23.08 0.15 -13.40 16 11 H 0.13 4.39 7.28 -2.91 -0.02 4.37 16 12 C 0.04 1.34 5.21 85.55 0.45 1.79 16 13 N -0.74 -29.11 10.92 21.98 0.24 -28.87 16 14 Si 0.99 26.35 29.57 68.60 2.03 28.38 16 15 H -0.27 -7.50 7.11 99.48 0.71 -6.79 16 16 H -0.26 -6.74 7.11 99.48 0.71 -6.04 16 17 H -0.23 -5.57 7.11 99.48 0.71 -4.86 16 18 C -0.31 -13.44 5.88 -20.07 -0.12 -13.56 16 19 C 0.33 14.57 14.05 88.33 1.24 15.82 16 20 N -0.54 -24.24 18.54 19.00 0.35 -23.89 16 21 C 0.31 14.70 14.83 88.32 1.31 16.01 16 22 N -0.56 -27.99 18.54 19.01 0.35 -27.64 16 23 C -0.20 -5.97 8.50 22.49 0.19 -5.78 16 24 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 25 H 0.08 0.93 8.13 -2.38 -0.02 0.91 16 26 H 0.10 0.60 8.07 -2.39 -0.02 0.58 16 27 H 0.20 1.69 8.06 -2.91 -0.02 1.67 16 28 H 0.19 4.61 8.06 -2.90 -0.02 4.59 16 29 H 0.40 20.04 7.94 -92.71 -0.74 19.30 16 30 H 0.31 11.33 8.29 -92.70 -0.77 10.56 16 31 H 0.17 4.92 6.14 -2.91 -0.02 4.90 16 Total: -1.00 -70.17 297.38 7.36 -62.81 By element: Atomic # 1 Polarization: 29.60 SS G_CDS: 0.47 Total: 30.07 kcal Atomic # 6 Polarization: 27.77 SS G_CDS: 5.94 Total: 33.71 kcal Atomic # 7 Polarization: -117.66 SS G_CDS: -0.35 Total: -118.01 kcal Atomic # 8 Polarization: -36.23 SS G_CDS: -0.74 Total: -36.97 kcal Atomic # 14 Polarization: 26.35 SS G_CDS: 2.03 Total: 28.38 kcal Total: -70.17 7.36 -62.81 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169079189.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.605 kcal (2) G-P(sol) polarization free energy of solvation -70.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.813 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds