Wall clock time and date at job start Mon Mar 30 2020 01:23:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.35955 * 119.44315 * 2 1 4 4 C 1.34947 * 120.90203 * 180.28281 * 3 2 1 5 5 C 1.41114 * 119.77627 * 359.74746 * 4 3 2 6 6 N 1.38521 * 120.53396 * 179.97438 * 5 4 3 7 7 C 1.38455 * 119.99779 * 354.55323 * 6 5 4 8 8 C 1.38933 * 119.99807 * 299.96802 * 7 6 5 9 9 H 1.08003 * 119.99920 * 158.34767 * 8 7 6 10 10 C 1.40867 * 120.00523 * 338.35270 * 8 7 6 11 11 N 1.30326 * 119.99591 * 350.87316 * 10 8 7 12 12 Si 1.86796 * 120.00360 * 170.86851 * 10 8 7 13 13 H 1.48498 * 109.47329 * 0.02562 * 12 10 8 14 14 H 1.48508 * 109.47115 * 120.00000 * 12 10 8 15 15 H 1.48494 * 109.47439 * 239.99791 * 12 10 8 16 16 C 1.41129 * 119.99772 * 119.97502 * 7 6 5 17 17 C 1.43203 * 119.99484 * 185.25726 * 16 7 6 18 18 N 7.90247 * 149.26642 * 10.90816 * 2 1 3 19 19 C 1.43195 * 120.00161 * 5.25610 * 16 7 6 20 20 N 6.82763 * 155.15544 * 88.16544 * 2 1 3 21 21 C 1.38520 * 118.93289 * 0.02562 * 5 4 3 22 22 C 1.34584 * 119.43776 * 179.77092 * 2 1 3 23 23 O 1.22134 * 119.91699 * 359.97438 * 22 2 1 24 24 H 1.09009 * 109.46650 * 270.23394 * 1 2 3 25 25 H 1.08995 * 109.46952 * 30.23153 * 1 2 3 26 26 H 1.08997 * 109.47032 * 150.23355 * 1 2 3 27 27 H 1.07999 * 119.54854 * 0.03065 * 3 2 1 28 28 H 1.07993 * 120.11232 * 179.72043 * 4 3 2 29 29 H 0.97001 * 120.00317 * 174.55166 * 6 5 4 30 30 H 0.97003 * 119.99896 * 185.04764 * 11 10 8 31 31 H 1.07998 * 120.45009 * 180.02562 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1334 1.1840 0.0000 4 6 3.4824 1.2183 -0.0057 5 6 4.2141 0.0117 -0.0064 6 7 5.5992 0.0287 -0.0128 7 6 6.2763 1.2305 -0.1323 8 6 6.0881 2.0249 -1.2565 9 1 6.3136 3.0803 -1.2158 10 6 5.6032 1.4539 -2.4495 11 7 5.4995 0.1592 -2.5570 12 14 5.1086 2.5522 -3.8771 13 1 5.3206 3.9740 -3.5045 14 1 5.9373 2.2234 -5.0648 15 1 3.6754 2.3324 -4.1975 16 6 7.1575 1.6484 0.8877 17 6 7.7710 2.9405 0.8188 18 7 8.2576 3.9656 0.7642 19 6 7.4382 0.7804 1.9915 20 7 7.6608 0.0918 2.8672 21 6 3.5251 -1.1899 -0.0017 22 6 2.1265 -1.1721 0.0047 23 8 1.5040 -2.2228 0.0094 24 1 -0.3633 0.0042 1.0278 25 1 -0.3633 0.8879 -0.5174 26 1 -0.3633 -0.8920 -0.5102 27 1 1.5770 2.1096 0.0005 28 1 4.0002 2.1660 -0.0102 29 1 6.0948 -0.8014 0.0666 30 1 5.2357 -0.2378 -3.4018 31 1 4.0605 -2.1278 -0.0016 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169079424.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:17 Heat of formation + Delta-G solvation = 55.460563 kcal Electronic energy + Delta-G solvation = -19657.791972 eV Core-core repulsion = 16518.691335 eV Total energy + Delta-G solvation = -3139.100637 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.086 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.70706 -38.24760 -36.13106 -35.49426 -34.82832 -34.23433 -32.62005 -30.41435 -28.96802 -27.26632 -26.58544 -23.30844 -22.53289 -21.04312 -19.08704 -17.60102 -17.38534 -16.79816 -16.27843 -16.17084 -15.52255 -15.13531 -14.52032 -13.96387 -13.49278 -12.94623 -12.87321 -12.71250 -12.67510 -12.44249 -12.30027 -12.01173 -11.82412 -11.80541 -11.64310 -11.52986 -11.24400 -11.07694 -10.98803 -10.82065 -10.35537 -10.21759 -9.45692 -8.50528 -7.94779 -7.59998 -7.01120 -5.57455 1.47714 2.00140 2.59402 2.61892 2.71304 2.80190 3.14802 3.29392 3.73980 3.84655 3.97562 4.10530 4.28220 4.35565 4.85929 5.00048 5.05995 5.38417 5.45772 5.59624 5.66709 5.81127 5.89778 6.09600 6.20138 6.25566 6.63701 6.71255 6.82054 6.94142 7.20778 7.51581 7.63211 7.66898 8.11989 8.31907 8.69669 8.87009 9.02991 9.08800 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.014552 B = 0.008117 C = 0.006149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1923.677704 B = 3448.605832 C = 4552.774116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.520 5.520 3 C 0.132 3.868 4 C -0.234 4.234 5 C 0.341 3.659 6 N -0.636 5.636 7 C 0.370 3.630 8 C -0.375 4.375 9 H 0.114 0.886 10 C 0.069 3.931 11 N -0.712 5.712 12 Si 0.923 3.077 13 H -0.247 1.247 14 H -0.262 1.262 15 H -0.261 1.261 16 C -0.308 4.308 17 C 0.324 3.676 18 N -0.530 5.530 19 C 0.307 3.693 20 N -0.529 5.529 21 C -0.366 4.366 22 C 0.534 3.466 23 O -0.588 6.588 24 H 0.066 0.934 25 H 0.075 0.925 26 H 0.087 0.913 27 H 0.157 0.843 28 H 0.156 0.844 29 H 0.407 0.593 30 H 0.305 0.695 31 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.768 2.646 -5.354 11.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.234 5.234 3 C 0.005 3.995 4 C -0.259 4.259 5 C 0.227 3.773 6 N -0.253 5.253 7 C 0.266 3.734 8 C -0.402 4.402 9 H 0.132 0.868 10 C -0.163 4.163 11 N -0.330 5.330 12 Si 0.744 3.256 13 H -0.169 1.169 14 H -0.187 1.187 15 H -0.185 1.185 16 C -0.327 4.327 17 C 0.016 3.984 18 N -0.212 5.212 19 C -0.001 4.001 20 N -0.211 5.211 21 C -0.395 4.395 22 C 0.341 3.659 23 O -0.475 6.475 24 H 0.084 0.916 25 H 0.094 0.906 26 H 0.105 0.895 27 H 0.174 0.826 28 H 0.174 0.826 29 H 0.244 0.756 30 H 0.117 0.883 31 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -9.139 2.429 -4.212 10.351 hybrid contribution -0.123 -0.108 -1.082 1.094 sum -9.261 2.320 -5.294 10.917 Atomic orbital electron populations 1.21940 0.78698 1.04007 1.02916 1.45294 1.08301 1.06896 1.62872 1.21528 0.93245 0.89078 0.95608 1.20733 0.92361 0.99261 1.13567 1.17910 0.82980 0.93104 0.83302 1.41484 1.02747 1.08396 1.72654 1.16838 0.85630 0.81833 0.89051 1.20359 1.28649 0.98919 0.92263 0.86795 1.26507 0.92032 0.95947 1.01863 1.69468 1.23094 1.11964 1.28477 0.85909 0.79733 0.81193 0.78735 1.16947 1.18664 1.18515 1.12886 1.24677 0.93017 1.02072 1.24662 0.90800 0.91289 0.91617 1.81077 1.15432 1.13437 1.11284 1.25182 0.91297 0.92233 0.91392 1.81097 1.14804 1.12107 1.13061 1.21124 0.92022 0.97278 1.29041 1.16435 0.88568 0.82106 0.78746 1.90869 1.69726 1.30123 1.56826 0.91567 0.90579 0.89458 0.82574 0.82644 0.75595 0.88290 0.84739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.73 10.34 59.85 0.62 1.35 16 2 N -0.52 -7.68 2.99 -127.48 -0.38 -8.06 16 3 C 0.13 1.70 10.26 -16.89 -0.17 1.52 16 4 C -0.23 -3.59 8.52 -39.66 -0.34 -3.92 16 5 C 0.34 5.98 5.21 -83.65 -0.44 5.54 16 6 N -0.64 -11.48 3.30 -8.02 -0.03 -11.51 16 7 C 0.37 6.97 5.02 -83.52 -0.42 6.55 16 8 C -0.37 -6.80 6.83 -38.33 -0.26 -7.06 16 9 H 0.11 2.09 7.02 -52.48 -0.37 1.72 16 10 C 0.07 1.17 4.77 -17.20 -0.08 1.09 16 11 N -0.71 -12.63 11.04 55.60 0.61 -12.02 16 12 Si 0.92 13.39 29.58 -169.99 -5.03 8.37 16 13 H -0.25 -3.63 7.11 56.52 0.40 -3.23 16 14 H -0.26 -3.89 7.11 56.52 0.40 -3.49 16 15 H -0.26 -3.77 7.11 56.52 0.40 -3.37 16 16 C -0.31 -6.26 5.88 -104.95 -0.62 -6.88 16 17 C 0.32 6.93 13.91 -22.47 -0.31 6.61 16 18 N -0.53 -11.86 18.54 41.84 0.78 -11.09 16 19 C 0.31 6.61 14.80 -22.47 -0.33 6.28 16 20 N -0.53 -12.06 18.54 41.84 0.78 -11.29 16 21 C -0.37 -6.84 9.89 -38.87 -0.38 -7.22 16 22 C 0.53 10.12 7.38 -15.73 -0.12 10.00 16 23 O -0.59 -12.90 16.61 4.80 0.08 -12.82 16 24 H 0.07 0.65 8.14 -51.92 -0.42 0.22 16 25 H 0.08 0.57 8.01 -51.93 -0.42 0.15 16 26 H 0.09 1.07 7.37 -51.93 -0.38 0.69 16 27 H 0.16 1.31 8.03 -52.49 -0.42 0.89 16 28 H 0.16 2.33 6.23 -52.49 -0.33 2.00 16 29 H 0.41 7.30 8.81 -40.82 -0.36 6.94 16 30 H 0.30 5.01 8.29 -40.82 -0.34 4.67 16 31 H 0.13 2.55 8.06 -52.49 -0.42 2.13 16 LS Contribution 294.68 15.07 4.44 4.44 Total: -1.00 -26.93 294.68 -3.86 -30.79 By element: Atomic # 1 Polarization: 11.59 SS G_CDS: -2.25 Total: 9.33 kcal Atomic # 6 Polarization: 16.70 SS G_CDS: -2.85 Total: 13.85 kcal Atomic # 7 Polarization: -55.72 SS G_CDS: 1.76 Total: -53.96 kcal Atomic # 8 Polarization: -12.90 SS G_CDS: 0.08 Total: -12.82 kcal Atomic # 14 Polarization: 13.39 SS G_CDS: -5.03 Total: 8.37 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -26.93 -3.86 -30.79 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169079424.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.250 kcal (2) G-P(sol) polarization free energy of solvation -26.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.789 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds