Wall clock time and date at job start Mon Mar 30 2020 01:23:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.35955 * 119.44315 * 2 1 4 4 C 1.34947 * 120.90203 * 180.28281 * 3 2 1 5 5 C 1.41114 * 119.77627 * 359.74746 * 4 3 2 6 6 N 1.38521 * 120.53396 * 179.97438 * 5 4 3 7 7 C 1.38455 * 119.99779 * 354.55323 * 6 5 4 8 8 C 1.38933 * 119.99807 * 299.96802 * 7 6 5 9 9 H 1.08003 * 119.99920 * 158.34767 * 8 7 6 10 10 C 1.40867 * 120.00523 * 338.35270 * 8 7 6 11 11 N 1.30326 * 119.99591 * 350.87316 * 10 8 7 12 12 Si 1.86796 * 120.00360 * 170.86851 * 10 8 7 13 13 H 1.48498 * 109.47329 * 0.02562 * 12 10 8 14 14 H 1.48508 * 109.47115 * 120.00000 * 12 10 8 15 15 H 1.48494 * 109.47439 * 239.99791 * 12 10 8 16 16 C 1.41129 * 119.99772 * 119.97502 * 7 6 5 17 17 C 1.43203 * 119.99484 * 185.25726 * 16 7 6 18 18 N 7.90247 * 149.26642 * 10.90816 * 2 1 3 19 19 C 1.43195 * 120.00161 * 5.25610 * 16 7 6 20 20 N 6.82763 * 155.15544 * 88.16544 * 2 1 3 21 21 C 1.38520 * 118.93289 * 0.02562 * 5 4 3 22 22 C 1.34584 * 119.43776 * 179.77092 * 2 1 3 23 23 O 1.22134 * 119.91699 * 359.97438 * 22 2 1 24 24 H 1.09009 * 109.46650 * 270.23394 * 1 2 3 25 25 H 1.08995 * 109.46952 * 30.23153 * 1 2 3 26 26 H 1.08997 * 109.47032 * 150.23355 * 1 2 3 27 27 H 1.07999 * 119.54854 * 0.03065 * 3 2 1 28 28 H 1.07993 * 120.11232 * 179.72043 * 4 3 2 29 29 H 0.97001 * 120.00317 * 174.55166 * 6 5 4 30 30 H 0.97003 * 119.99896 * 185.04764 * 11 10 8 31 31 H 1.07998 * 120.45009 * 180.02562 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1334 1.1840 0.0000 4 6 3.4824 1.2183 -0.0057 5 6 4.2141 0.0117 -0.0064 6 7 5.5992 0.0287 -0.0128 7 6 6.2763 1.2305 -0.1323 8 6 6.0881 2.0249 -1.2565 9 1 6.3136 3.0803 -1.2158 10 6 5.6032 1.4539 -2.4495 11 7 5.4995 0.1592 -2.5570 12 14 5.1086 2.5522 -3.8771 13 1 5.3206 3.9740 -3.5045 14 1 5.9373 2.2234 -5.0648 15 1 3.6754 2.3324 -4.1975 16 6 7.1575 1.6484 0.8877 17 6 7.7710 2.9405 0.8188 18 7 8.2576 3.9656 0.7642 19 6 7.4382 0.7804 1.9915 20 7 7.6608 0.0918 2.8672 21 6 3.5251 -1.1899 -0.0017 22 6 2.1265 -1.1721 0.0047 23 8 1.5040 -2.2228 0.0094 24 1 -0.3633 0.0042 1.0278 25 1 -0.3633 0.8879 -0.5174 26 1 -0.3633 -0.8920 -0.5102 27 1 1.5770 2.1096 0.0005 28 1 4.0002 2.1660 -0.0102 29 1 6.0948 -0.8014 0.0666 30 1 5.2357 -0.2378 -3.4018 31 1 4.0605 -2.1278 -0.0016 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169079424.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:16 Heat of formation + Delta-G solvation = 40.154427 kcal Electronic energy + Delta-G solvation = -19658.455696 eV Core-core repulsion = 16518.691335 eV Total energy + Delta-G solvation = -3139.764361 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.086 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.00043 -39.69128 -37.60820 -37.06011 -36.53399 -35.62001 -33.99404 -31.74872 -30.35592 -28.78349 -27.66146 -24.54350 -23.93153 -22.45123 -20.62031 -19.06974 -18.79755 -18.03997 -17.64819 -17.45389 -16.73318 -16.53378 -15.87325 -15.25691 -14.76351 -14.58261 -14.37798 -14.01715 -13.89671 -13.84297 -13.46103 -13.43707 -13.38346 -13.22717 -13.15464 -12.94809 -12.72921 -12.51908 -12.45139 -12.00020 -11.66867 -11.50911 -10.93272 -9.96345 -9.29778 -8.89786 -8.48231 -7.13429 0.19815 0.65386 1.27832 1.42696 1.57360 1.61695 2.00813 2.06158 2.11106 2.25105 2.33245 2.61935 2.75359 2.99019 3.41592 3.82955 3.94276 4.08320 4.39224 4.51053 4.57910 4.60385 4.70255 4.72052 4.86735 4.94355 5.33096 5.40527 5.41362 5.62625 5.81581 6.03714 6.19517 6.37403 6.67995 6.85112 7.20339 7.30967 7.36475 7.72386 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.014552 B = 0.008117 C = 0.006149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1923.677704 B = 3448.605832 C = 4552.774116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.517 5.517 3 C 0.165 3.835 4 C -0.265 4.265 5 C 0.346 3.654 6 N -0.638 5.638 7 C 0.365 3.635 8 C -0.359 4.359 9 H 0.116 0.884 10 C 0.047 3.953 11 N -0.723 5.723 12 Si 0.979 3.021 13 H -0.246 1.246 14 H -0.266 1.266 15 H -0.253 1.253 16 C -0.322 4.322 17 C 0.331 3.669 18 N -0.553 5.553 19 C 0.314 3.686 20 N -0.561 5.561 21 C -0.394 4.394 22 C 0.522 3.478 23 O -0.632 6.632 24 H 0.080 0.920 25 H 0.123 0.877 26 H 0.068 0.932 27 H 0.217 0.783 28 H 0.163 0.837 29 H 0.403 0.597 30 H 0.313 0.687 31 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.677 4.835 -6.808 14.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.228 5.228 3 C 0.038 3.962 4 C -0.290 4.290 5 C 0.233 3.767 6 N -0.254 5.254 7 C 0.261 3.739 8 C -0.385 4.385 9 H 0.134 0.866 10 C -0.185 4.185 11 N -0.341 5.341 12 Si 0.798 3.202 13 H -0.168 1.168 14 H -0.191 1.191 15 H -0.177 1.177 16 C -0.341 4.341 17 C 0.025 3.975 18 N -0.236 5.236 19 C 0.008 3.992 20 N -0.244 5.244 21 C -0.423 4.423 22 C 0.330 3.670 23 O -0.523 6.523 24 H 0.098 0.902 25 H 0.142 0.858 26 H 0.087 0.913 27 H 0.234 0.766 28 H 0.180 0.820 29 H 0.239 0.761 30 H 0.125 0.875 31 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -11.060 4.627 -5.651 13.254 hybrid contribution 0.388 -0.789 -0.738 1.148 sum -10.672 3.838 -6.389 13.017 Atomic orbital electron populations 1.22268 0.75939 1.05470 1.04386 1.45367 1.10135 1.06280 1.60999 1.22352 0.92791 0.90056 0.91013 1.20890 0.93568 0.98394 1.16148 1.18104 0.82654 0.93697 0.82276 1.41495 1.03116 1.08027 1.72786 1.16821 0.85798 0.82220 0.89025 1.20559 1.26937 0.98835 0.92189 0.86623 1.27098 0.91589 0.96672 1.03113 1.69492 1.22050 1.13098 1.29414 0.85087 0.79589 0.79604 0.75903 1.16833 1.19087 1.17689 1.12903 1.25893 0.92756 1.02500 1.24747 0.90410 0.91253 0.91115 1.81073 1.16397 1.14101 1.12067 1.25388 0.90672 0.91901 0.91228 1.81087 1.16137 1.13074 1.14107 1.21027 0.92578 0.97211 1.31491 1.16475 0.88614 0.82927 0.78949 1.90830 1.70461 1.31910 1.59117 0.90154 0.85829 0.91285 0.76610 0.81971 0.76087 0.87486 0.86637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.10 10.34 127.77 1.32 2.42 16 2 N -0.52 -13.85 2.99 -675.37 -2.02 -15.87 16 3 C 0.16 3.54 10.26 83.30 0.85 4.39 16 4 C -0.26 -7.47 8.52 22.22 0.19 -7.28 16 5 C 0.35 12.00 5.21 38.86 0.20 12.20 16 6 N -0.64 -23.11 3.30 -179.28 -0.59 -23.71 16 7 C 0.37 13.51 5.02 38.97 0.20 13.71 16 8 C -0.36 -12.38 6.83 23.08 0.16 -12.23 16 9 H 0.12 3.99 7.02 -2.91 -0.02 3.97 16 10 C 0.05 1.49 4.77 85.56 0.41 1.89 16 11 N -0.72 -24.62 11.04 21.98 0.24 -24.38 16 12 Si 0.98 24.74 29.58 68.60 2.03 26.77 16 13 H -0.25 -6.19 7.11 99.48 0.71 -5.48 16 14 H -0.27 -6.94 7.11 99.48 0.71 -6.23 16 15 H -0.25 -6.12 7.11 99.48 0.71 -5.41 16 16 C -0.32 -13.02 5.88 -20.08 -0.12 -13.14 16 17 C 0.33 14.00 13.91 88.33 1.23 15.22 16 18 N -0.55 -24.40 18.54 19.00 0.35 -24.05 16 19 C 0.31 13.71 14.80 88.33 1.31 15.02 16 20 N -0.56 -26.04 18.54 19.00 0.35 -25.69 16 21 C -0.39 -15.09 9.89 22.73 0.22 -14.87 16 22 C 0.52 19.72 7.38 84.67 0.63 20.35 16 23 O -0.63 -28.35 16.61 -5.75 -0.10 -28.45 16 24 H 0.08 1.28 8.14 -2.38 -0.02 1.27 16 25 H 0.12 1.11 8.01 -2.39 -0.02 1.09 16 26 H 0.07 1.57 7.37 -2.39 -0.02 1.55 16 27 H 0.22 2.06 8.03 -2.91 -0.02 2.04 16 28 H 0.16 4.37 6.23 -2.91 -0.02 4.36 16 29 H 0.40 14.92 8.81 -92.71 -0.82 14.11 16 30 H 0.31 9.78 8.29 -92.71 -0.77 9.01 16 31 H 0.12 4.70 8.06 -2.91 -0.02 4.68 16 Total: -1.00 -60.01 294.68 7.26 -52.74 By element: Atomic # 1 Polarization: 24.54 SS G_CDS: 0.39 Total: 24.93 kcal Atomic # 6 Polarization: 31.10 SS G_CDS: 6.60 Total: 37.69 kcal Atomic # 7 Polarization: -112.03 SS G_CDS: -1.66 Total: -113.70 kcal Atomic # 8 Polarization: -28.35 SS G_CDS: -0.10 Total: -28.45 kcal Atomic # 14 Polarization: 24.74 SS G_CDS: 2.03 Total: 26.77 kcal Total: -60.01 7.26 -52.74 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169079424.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.897 kcal (2) G-P(sol) polarization free energy of solvation -60.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.743 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds