Wall clock time and date at job start Mon Mar 30 2020 01:26:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35759 * 117.00108 * 2 1 4 4 C 1.38899 * 119.60623 * 179.97438 * 3 2 1 5 5 C 1.38317 * 119.19441 * 179.97438 * 4 3 2 6 6 C 1.39408 * 118.41927 * 359.97438 * 5 4 3 7 7 N 1.39984 * 120.43103 * 179.97438 * 6 5 4 8 8 C 1.38252 * 120.00464 * 172.59865 * 7 6 5 9 9 C 1.39016 * 119.99631 * 300.16571 * 8 7 6 10 10 H 1.07999 * 119.99722 * 158.75428 * 9 8 7 11 11 C 1.40823 * 120.00386 * 338.47601 * 9 8 7 12 12 N 1.30342 * 119.99661 * 350.65242 * 11 9 8 13 13 Si 1.86797 * 120.00222 * 170.64665 * 11 9 8 14 14 H 1.48505 * 109.46947 * 60.00412 * 13 11 9 15 15 H 1.48501 * 109.47328 * 180.02562 * 13 11 9 16 16 H 1.48501 * 109.47249 * 300.00242 * 13 11 9 17 17 C 1.41174 * 120.00134 * 120.16504 * 8 7 6 18 18 C 1.43203 * 120.00123 * 354.51177 * 17 8 7 19 19 N 7.84965 * 111.14210 * 24.74268 * 2 1 3 20 20 C 1.43202 * 119.99941 * 174.51738 * 17 8 7 21 21 N 9.23148 * 91.73953 * 2.96432 * 2 1 3 22 22 C 1.38702 * 119.14307 * 0.25644 * 6 5 4 23 23 N 1.31944 * 120.72572 * 359.47532 * 22 6 5 24 24 H 1.08995 * 109.46916 * 299.99830 * 1 2 3 25 25 H 1.08996 * 109.46873 * 60.00395 * 1 2 3 26 26 H 1.08997 * 109.47042 * 180.02562 * 1 2 3 27 27 H 1.08003 * 120.40580 * 359.97438 * 4 3 2 28 28 H 1.07994 * 120.79337 * 180.02562 * 5 4 3 29 29 H 0.97006 * 120.00156 * 352.59682 * 7 6 5 30 30 H 0.97005 * 119.99919 * 185.01763 * 12 11 9 31 31 H 1.08005 * 119.63745 * 179.72823 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0454 1.2096 0.0000 4 6 3.4330 1.2727 0.0005 5 6 4.0521 2.5096 0.0000 6 6 3.2526 3.6517 -0.0016 7 7 3.8349 4.9247 -0.0017 8 6 3.0429 6.0472 -0.1575 9 6 2.2772 6.2033 -1.3073 10 1 1.4226 6.8636 -1.3013 11 6 2.6194 5.5052 -2.4814 12 7 3.7491 4.8586 -2.5493 13 14 1.4544 5.5058 -3.9415 14 1 1.2401 6.9008 -4.4033 15 1 2.0424 4.7037 -5.0444 16 1 0.1542 4.9128 -3.5376 17 6 3.0117 7.0346 0.8509 18 6 3.7065 6.8204 2.0846 19 7 4.2603 6.6492 3.0643 20 6 2.2852 8.2506 0.6401 21 7 1.7093 9.2149 0.4772 22 6 1.8728 3.5104 0.0028 23 7 1.3178 2.3134 -0.0019 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 4.0214 0.3671 0.0014 28 1 5.1291 2.5888 0.0000 29 1 4.7941 5.0194 0.1076 30 1 4.0185 4.4389 -3.3813 31 1 1.2459 4.3898 0.0060 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169079612.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:10 Heat of formation + Delta-G solvation = 57.729786 kcal Electronic energy + Delta-G solvation = -19517.395695 eV Core-core repulsion = 16378.393459 eV Total energy + Delta-G solvation = -3139.002236 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.086 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.15438 -38.22667 -36.69963 -35.22530 -34.73194 -33.63031 -32.00002 -30.74966 -28.28019 -27.22693 -26.57818 -23.30780 -22.31938 -21.22651 -19.04645 -17.94416 -17.33004 -17.18349 -16.21412 -15.86850 -15.56293 -15.12437 -14.07357 -13.96000 -13.57163 -13.15505 -13.02705 -12.75204 -12.61798 -12.32707 -12.26537 -11.78230 -11.70948 -11.64279 -11.56180 -11.50399 -11.23345 -11.03077 -10.90691 -10.63288 -10.13433 -9.92004 -9.19447 -9.09610 -8.15857 -7.73825 -6.59258 -5.51784 1.66963 1.82336 2.30350 2.68645 2.72007 2.87347 3.37008 3.53645 3.81045 3.94629 4.02793 4.18489 4.37527 4.42731 4.94943 5.12450 5.39576 5.43546 5.46129 5.54031 5.54392 5.67101 5.82934 6.10389 6.17363 6.24163 6.36995 6.59315 6.79626 7.00935 7.23280 7.58403 7.69481 7.74803 8.20601 8.40477 8.51716 8.93638 9.09944 9.15969 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.014406 B = 0.007776 C = 0.006053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1943.101934 B = 3599.966075 C = 4624.583062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 O -0.320 6.320 3 C 0.241 3.759 4 C -0.147 4.147 5 C -0.118 4.118 6 C 0.179 3.821 7 N -0.654 5.654 8 C 0.381 3.619 9 C -0.382 4.382 10 H 0.111 0.889 11 C 0.073 3.927 12 N -0.716 5.716 13 Si 0.921 3.079 14 H -0.253 1.253 15 H -0.269 1.269 16 H -0.249 1.249 17 C -0.310 4.310 18 C 0.310 3.690 19 N -0.534 5.534 20 C 0.325 3.675 21 N -0.532 5.532 22 C 0.075 3.925 23 N -0.504 5.504 24 H 0.053 0.947 25 H 0.053 0.947 26 H 0.085 0.915 27 H 0.131 0.869 28 H 0.134 0.866 29 H 0.403 0.597 30 H 0.302 0.698 31 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.163 -10.174 -5.047 11.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 O -0.228 6.228 3 C 0.062 3.938 4 C -0.168 4.168 5 C -0.148 4.148 6 C 0.074 3.926 7 N -0.276 5.276 8 C 0.276 3.724 9 C -0.410 4.410 10 H 0.129 0.871 11 C -0.159 4.159 12 N -0.335 5.335 13 Si 0.742 3.258 14 H -0.176 1.176 15 H -0.194 1.194 16 H -0.172 1.172 17 C -0.329 4.329 18 C 0.003 3.997 19 N -0.217 5.217 20 C 0.017 3.983 21 N -0.214 5.214 22 C -0.086 4.086 23 N -0.226 5.226 24 H 0.072 0.928 25 H 0.072 0.928 26 H 0.104 0.896 27 H 0.149 0.851 28 H 0.152 0.848 29 H 0.240 0.760 30 H 0.114 0.886 31 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -1.945 -9.416 -3.915 10.381 hybrid contribution 0.783 -0.134 -1.118 1.371 sum -1.162 -9.550 -5.032 10.857 Atomic orbital electron populations 1.22672 0.78447 1.01802 1.02117 1.86147 1.21867 1.25149 1.89677 1.19483 0.89224 0.84457 1.00677 1.20644 0.91746 0.98311 1.06086 1.20759 0.99787 0.90198 1.04068 1.18401 0.93079 0.85491 0.95609 1.41343 1.08877 1.01093 1.76299 1.16722 0.84499 0.82236 0.88896 1.20325 1.10551 1.17499 0.92613 0.87083 1.26452 0.95916 0.91572 1.01933 1.69476 1.17813 1.16912 1.29260 0.86036 0.80920 0.80678 0.78173 1.17637 1.19365 1.17241 1.12996 1.28012 0.97244 0.94621 1.25284 0.90962 0.91944 0.91550 1.81169 1.17185 1.10713 1.12610 1.24659 0.90782 0.91095 0.91785 1.81022 1.16858 1.13189 1.10340 1.22214 0.91490 0.93821 1.01032 1.67136 1.40515 0.98412 1.16501 0.92786 0.92847 0.89611 0.85087 0.84818 0.76005 0.88630 0.81756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.57 10.38 101.05 1.05 1.62 16 2 O -0.32 -5.03 10.48 -18.99 -0.20 -5.23 16 3 C 0.24 4.13 7.49 -17.15 -0.13 4.01 16 4 C -0.15 -2.28 10.03 -39.31 -0.39 -2.67 16 5 C -0.12 -1.86 10.04 -39.12 -0.39 -2.25 16 6 C 0.18 3.16 5.17 -83.53 -0.43 2.73 16 7 N -0.65 -11.74 3.33 -8.06 -0.03 -11.77 16 8 C 0.38 7.45 4.97 -83.57 -0.41 7.03 16 9 C -0.38 -7.40 6.88 -38.32 -0.26 -7.67 16 10 H 0.11 2.19 7.14 -52.49 -0.37 1.81 16 11 C 0.07 1.33 4.83 -17.21 -0.08 1.24 16 12 N -0.72 -12.90 11.04 55.59 0.61 -12.28 16 13 Si 0.92 14.66 29.58 -169.99 -5.03 9.64 16 14 H -0.25 -4.10 7.11 56.52 0.40 -3.70 16 15 H -0.27 -4.21 7.11 56.52 0.40 -3.81 16 16 H -0.25 -4.07 7.11 56.52 0.40 -3.67 16 17 C -0.31 -6.51 5.88 -104.93 -0.62 -7.12 16 18 C 0.31 6.78 14.83 -22.40 -0.33 6.45 16 19 N -0.53 -12.28 18.55 41.93 0.78 -11.50 16 20 C 0.32 7.22 13.96 -22.51 -0.31 6.90 16 21 N -0.53 -12.37 18.53 41.80 0.77 -11.59 16 22 C 0.08 1.40 9.80 -17.33 -0.17 1.23 16 23 N -0.50 -9.20 9.20 -13.16 -0.12 -9.32 16 24 H 0.05 0.69 8.10 -51.93 -0.42 0.27 16 25 H 0.05 0.69 8.10 -51.93 -0.42 0.27 16 26 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 27 H 0.13 1.70 8.06 -52.48 -0.42 1.28 16 28 H 0.13 1.80 8.06 -52.49 -0.42 1.37 16 29 H 0.40 6.87 8.85 -40.82 -0.36 6.51 16 30 H 0.30 5.03 8.29 -40.82 -0.34 4.70 16 31 H 0.17 3.11 6.26 -52.48 -0.33 2.78 16 LS Contribution 297.32 15.07 4.48 4.48 Total: -1.00 -24.37 297.32 -3.53 -27.90 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: -2.31 Total: 8.18 kcal Atomic # 6 Polarization: 13.99 SS G_CDS: -2.49 Total: 11.50 kcal Atomic # 7 Polarization: -58.49 SS G_CDS: 2.02 Total: -56.47 kcal Atomic # 8 Polarization: -5.03 SS G_CDS: -0.20 Total: -5.23 kcal Atomic # 14 Polarization: 14.66 SS G_CDS: -5.03 Total: 9.64 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -24.37 -3.53 -27.90 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169079612.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.628 kcal (2) G-P(sol) polarization free energy of solvation -24.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.898 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds