Wall clock time and date at job start Mon Mar 30 2020 01:26:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35759 * 117.00108 * 2 1 4 4 C 1.38899 * 119.60623 * 179.97438 * 3 2 1 5 5 C 1.38317 * 119.19441 * 179.97438 * 4 3 2 6 6 C 1.39408 * 118.41927 * 359.97438 * 5 4 3 7 7 N 1.39984 * 120.43103 * 179.97438 * 6 5 4 8 8 C 1.38252 * 120.00464 * 172.59865 * 7 6 5 9 9 C 1.39016 * 119.99631 * 300.16571 * 8 7 6 10 10 H 1.07999 * 119.99722 * 158.75428 * 9 8 7 11 11 C 1.40823 * 120.00386 * 338.47601 * 9 8 7 12 12 N 1.30342 * 119.99661 * 350.65242 * 11 9 8 13 13 Si 1.86797 * 120.00222 * 170.64665 * 11 9 8 14 14 H 1.48505 * 109.46947 * 60.00412 * 13 11 9 15 15 H 1.48501 * 109.47328 * 180.02562 * 13 11 9 16 16 H 1.48501 * 109.47249 * 300.00242 * 13 11 9 17 17 C 1.41174 * 120.00134 * 120.16504 * 8 7 6 18 18 C 1.43203 * 120.00123 * 354.51177 * 17 8 7 19 19 N 7.84965 * 111.14210 * 24.74268 * 2 1 3 20 20 C 1.43202 * 119.99941 * 174.51738 * 17 8 7 21 21 N 9.23148 * 91.73953 * 2.96432 * 2 1 3 22 22 C 1.38702 * 119.14307 * 0.25644 * 6 5 4 23 23 N 1.31944 * 120.72572 * 359.47532 * 22 6 5 24 24 H 1.08995 * 109.46916 * 299.99830 * 1 2 3 25 25 H 1.08996 * 109.46873 * 60.00395 * 1 2 3 26 26 H 1.08997 * 109.47042 * 180.02562 * 1 2 3 27 27 H 1.08003 * 120.40580 * 359.97438 * 4 3 2 28 28 H 1.07994 * 120.79337 * 180.02562 * 5 4 3 29 29 H 0.97006 * 120.00156 * 352.59682 * 7 6 5 30 30 H 0.97005 * 119.99919 * 185.01763 * 12 11 9 31 31 H 1.08005 * 119.63745 * 179.72823 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0454 1.2096 0.0000 4 6 3.4330 1.2727 0.0005 5 6 4.0521 2.5096 0.0000 6 6 3.2526 3.6517 -0.0016 7 7 3.8349 4.9247 -0.0017 8 6 3.0429 6.0472 -0.1575 9 6 2.2772 6.2033 -1.3073 10 1 1.4226 6.8636 -1.3013 11 6 2.6194 5.5052 -2.4814 12 7 3.7491 4.8586 -2.5493 13 14 1.4544 5.5058 -3.9415 14 1 1.2401 6.9008 -4.4033 15 1 2.0424 4.7037 -5.0444 16 1 0.1542 4.9128 -3.5376 17 6 3.0117 7.0346 0.8509 18 6 3.7065 6.8204 2.0846 19 7 4.2603 6.6492 3.0643 20 6 2.2852 8.2506 0.6401 21 7 1.7093 9.2149 0.4772 22 6 1.8728 3.5104 0.0028 23 7 1.3178 2.3134 -0.0019 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 4.0214 0.3671 0.0014 28 1 5.1291 2.5888 0.0000 29 1 4.7941 5.0194 0.1076 30 1 4.0185 4.4389 -3.3813 31 1 1.2459 4.3898 0.0060 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169079612.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:09 Heat of formation + Delta-G solvation = 43.506498 kcal Electronic energy + Delta-G solvation = -19518.012463 eV Core-core repulsion = 16378.393459 eV Total energy + Delta-G solvation = -3139.619004 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.086 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.45807 -39.57301 -38.10961 -36.86859 -36.49027 -35.07243 -33.36044 -32.18464 -29.59099 -28.79364 -27.74463 -24.65648 -23.62946 -22.68659 -20.64759 -19.20681 -18.86273 -18.55769 -17.65398 -17.25228 -16.75434 -16.50683 -15.36195 -15.28285 -14.80935 -14.61285 -14.42963 -14.27320 -14.17385 -13.85969 -13.63932 -13.39116 -13.34619 -13.12425 -13.10226 -12.74166 -12.64352 -12.54922 -12.31820 -12.01103 -11.53856 -11.27148 -10.51717 -10.39091 -9.66619 -9.16212 -7.99500 -7.12752 0.33110 0.46684 0.91056 1.36700 1.46340 1.55400 2.04424 2.09386 2.25797 2.32111 2.44413 2.61581 2.86173 3.06980 3.43640 3.65576 3.87274 4.15013 4.21450 4.36035 4.52978 4.57376 4.63623 4.72736 4.82321 4.89800 5.01967 5.28670 5.41546 5.51244 5.75091 6.07056 6.22094 6.43993 6.79522 6.97038 7.16037 7.23450 7.37713 7.73250 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.014406 B = 0.007776 C = 0.006053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1943.101934 B = 3599.966075 C = 4624.583062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.325 6.325 3 C 0.231 3.769 4 C -0.142 4.142 5 C -0.110 4.110 6 C 0.168 3.832 7 N -0.652 5.652 8 C 0.380 3.620 9 C -0.379 4.379 10 H 0.104 0.896 11 C 0.052 3.948 12 N -0.713 5.713 13 Si 0.966 3.034 14 H -0.257 1.257 15 H -0.258 1.258 16 H -0.257 1.257 17 C -0.324 4.324 18 C 0.318 3.682 19 N -0.559 5.559 20 C 0.330 3.670 21 N -0.558 5.558 22 C 0.056 3.944 23 N -0.519 5.519 24 H 0.047 0.953 25 H 0.047 0.953 26 H 0.121 0.879 27 H 0.161 0.839 28 H 0.160 0.840 29 H 0.407 0.593 30 H 0.312 0.688 31 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.646 -12.018 -6.269 13.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.234 6.234 3 C 0.050 3.950 4 C -0.163 4.163 5 C -0.140 4.140 6 C 0.063 3.937 7 N -0.275 5.275 8 C 0.275 3.725 9 C -0.406 4.406 10 H 0.122 0.878 11 C -0.180 4.180 12 N -0.331 5.331 13 Si 0.786 3.214 14 H -0.181 1.181 15 H -0.182 1.182 16 H -0.181 1.181 17 C -0.343 4.343 18 C 0.012 3.988 19 N -0.243 5.243 20 C 0.023 3.977 21 N -0.242 5.242 22 C -0.104 4.104 23 N -0.241 5.241 24 H 0.066 0.934 25 H 0.066 0.934 26 H 0.139 0.861 27 H 0.179 0.821 28 H 0.177 0.823 29 H 0.245 0.755 30 H 0.124 0.876 31 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -1.412 -11.274 -5.130 12.467 hybrid contribution 0.596 0.276 -0.822 1.053 sum -0.816 -10.998 -5.952 12.532 Atomic orbital electron populations 1.22892 0.76959 1.03996 1.01524 1.86150 1.23380 1.24356 1.89477 1.19862 0.90132 0.84591 1.00369 1.21005 0.91399 0.99348 1.04502 1.21087 1.00977 0.89510 1.02413 1.18501 0.93013 0.85803 0.96363 1.41230 1.08846 1.00815 1.76566 1.16657 0.84868 0.82497 0.88512 1.20461 1.09989 1.17048 0.93109 0.87798 1.26840 0.96853 0.91435 1.02844 1.69445 1.17809 1.15691 1.30153 0.85364 0.79244 0.80371 0.76410 1.18050 1.18157 1.18142 1.13048 1.28843 0.97472 0.94926 1.25375 0.90586 0.91375 0.91421 1.81159 1.18377 1.11522 1.13205 1.24861 0.90481 0.91099 0.91244 1.81006 1.18082 1.13951 1.11131 1.22070 0.91937 0.93711 1.02669 1.67079 1.41196 0.98671 1.17193 0.93398 0.93420 0.86065 0.82146 0.82255 0.75535 0.87574 0.83102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.97 10.38 113.37 1.18 2.15 16 2 O -0.33 -9.53 10.48 -90.85 -0.95 -10.48 16 3 C 0.23 7.50 7.49 84.79 0.63 8.13 16 4 C -0.14 -4.00 10.03 22.45 0.23 -3.77 16 5 C -0.11 -3.18 10.04 22.57 0.23 -2.96 16 6 C 0.17 5.70 5.17 38.23 0.20 5.89 16 7 N -0.65 -22.81 3.33 -179.41 -0.60 -23.41 16 8 C 0.38 14.76 4.97 39.04 0.19 14.95 16 9 C -0.38 -14.52 6.88 23.09 0.16 -14.36 16 10 H 0.10 4.11 7.14 -2.91 -0.02 4.09 16 11 C 0.05 1.82 4.83 85.55 0.41 2.23 16 12 N -0.71 -24.23 11.04 21.98 0.24 -23.99 16 13 Si 0.97 28.70 29.58 68.60 2.03 30.73 16 14 H -0.26 -7.78 7.11 99.48 0.71 -7.08 16 15 H -0.26 -7.19 7.11 99.48 0.71 -6.48 16 16 H -0.26 -7.99 7.11 99.48 0.71 -7.28 16 17 C -0.32 -13.66 5.88 -20.06 -0.12 -13.78 16 18 C 0.32 13.99 14.83 88.31 1.31 15.30 16 19 N -0.56 -25.72 18.55 19.03 0.35 -25.37 16 20 C 0.33 14.81 13.96 88.34 1.23 16.04 16 21 N -0.56 -26.23 18.53 18.99 0.35 -25.88 16 22 C 0.06 2.06 9.80 84.79 0.83 2.89 16 23 N -0.52 -18.56 9.20 -308.40 -2.84 -21.40 16 24 H 0.05 1.17 8.10 -2.39 -0.02 1.15 16 25 H 0.05 1.16 8.10 -2.39 -0.02 1.14 16 26 H 0.12 1.93 8.14 -2.39 -0.02 1.91 16 27 H 0.16 3.53 8.06 -2.91 -0.02 3.51 16 28 H 0.16 3.73 8.06 -2.91 -0.02 3.70 16 29 H 0.41 13.39 8.85 -92.70 -0.82 12.57 16 30 H 0.31 9.58 8.29 -92.70 -0.77 8.81 16 31 H 0.15 5.82 6.26 -2.91 -0.02 5.80 16 Total: -1.00 -50.69 297.32 5.46 -45.23 By element: Atomic # 1 Polarization: 21.46 SS G_CDS: 0.39 Total: 21.85 kcal Atomic # 6 Polarization: 26.24 SS G_CDS: 6.48 Total: 32.72 kcal Atomic # 7 Polarization: -117.56 SS G_CDS: -2.49 Total: -120.04 kcal Atomic # 8 Polarization: -9.53 SS G_CDS: -0.95 Total: -10.48 kcal Atomic # 14 Polarization: 28.70 SS G_CDS: 2.03 Total: 30.73 kcal Total: -50.69 5.46 -45.23 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169079612.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.741 kcal (2) G-P(sol) polarization free energy of solvation -50.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.234 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds