Wall clock time and date at job start Mon Mar 30 2020 01:23:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.35980 * 119.60605 * 2 1 4 4 C 1.35924 * 120.59180 * 180.02562 * 3 2 1 5 5 N 1.40248 * 120.09253 * 179.97438 * 4 3 2 6 6 C 1.38209 * 119.99805 * 174.44275 * 5 4 3 7 7 C 1.39035 * 120.00146 * 298.16003 * 6 5 4 8 8 H 1.07998 * 120.00119 * 161.91987 * 7 6 5 9 9 C 1.40817 * 119.99697 * 341.92594 * 7 6 5 10 10 N 1.30340 * 120.00225 * 352.68349 * 9 7 6 11 11 Si 1.86805 * 119.99922 * 172.68896 * 9 7 6 12 12 H 1.48505 * 109.47054 * 359.97438 * 11 9 7 13 13 H 1.48498 * 109.47503 * 119.99551 * 11 9 7 14 14 H 1.48496 * 109.47054 * 239.99924 * 11 9 7 15 15 C 1.41186 * 119.99908 * 118.15921 * 6 5 4 16 16 C 1.43193 * 119.99904 * 174.96219 * 15 6 5 17 17 N 8.10991 * 156.15864 * 348.83922 * 2 1 3 18 18 C 1.43197 * 119.99944 * 354.96527 * 15 6 5 19 19 N 6.15924 * 127.68464 * 320.26028 * 2 1 3 20 20 C 1.40655 * 119.81606 * 359.97438 * 4 3 2 21 21 C 1.36354 * 119.24289 * 0.02562 * 20 4 3 22 22 C 1.34627 * 119.61517 * 180.31105 * 2 1 3 23 23 O 1.22100 * 119.91941 * 359.97438 * 22 2 1 24 24 H 1.08999 * 109.47369 * 90.00373 * 1 2 3 25 25 H 1.09004 * 109.46711 * 209.99970 * 1 2 3 26 26 H 1.09000 * 109.47717 * 329.99680 * 1 2 3 27 27 H 1.08000 * 119.70699 * 359.97438 * 3 2 1 28 28 H 0.96998 * 120.00100 * 354.44137 * 5 4 3 29 29 H 0.97001 * 120.00019 * 185.03611 * 10 9 7 30 30 H 1.07998 * 120.37743 * 180.02562 * 20 4 3 31 31 H 1.08001 * 120.29913 * 179.97438 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1367 1.1823 0.0000 4 6 3.4958 1.2057 -0.0005 5 7 4.1780 2.4310 -0.0011 6 6 5.5551 2.4553 0.1143 7 6 6.1660 1.9502 1.2566 8 1 7.2156 1.6965 1.2403 9 6 5.4161 1.7694 2.4347 10 7 4.1897 2.2060 2.5000 11 14 6.1790 0.9040 3.9039 12 1 7.5720 0.5072 3.5762 13 1 6.1870 1.8228 5.0704 14 1 5.3844 -0.3066 4.2327 15 6 6.3414 2.9930 -0.9278 16 6 7.7585 3.1174 -0.7642 17 7 8.8828 3.2161 -0.6345 18 6 5.7218 3.4139 -2.1482 19 7 5.2302 3.7482 -3.1162 20 6 4.2160 -0.0025 -0.0005 21 6 3.5352 -1.1839 -0.0005 22 6 2.1302 -1.1704 -0.0064 23 8 1.5112 -2.2228 -0.0116 24 1 -0.3634 -0.0001 -1.0276 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3634 0.8899 0.5139 27 1 1.5856 2.1110 -0.0004 28 1 3.6834 3.2615 -0.0824 29 1 3.6978 2.1473 3.3340 30 1 5.2960 0.0055 -0.0005 31 1 4.0710 -2.1216 -0.0009 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169079639.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:19 Heat of formation + Delta-G solvation = 63.530599 kcal Electronic energy + Delta-G solvation = -19687.891377 eV Core-core repulsion = 16549.140683 eV Total energy + Delta-G solvation = -3138.750694 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.086 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.77988 -38.10348 -36.14564 -35.30243 -34.75673 -34.09275 -33.02062 -30.83588 -28.04655 -27.18633 -26.83493 -23.38119 -22.48120 -21.09355 -19.05203 -17.63325 -17.46341 -16.67682 -16.26108 -15.92622 -15.56257 -15.15708 -14.60646 -13.85090 -13.69957 -12.93946 -12.85308 -12.69711 -12.64535 -12.37107 -12.27616 -12.01128 -11.82399 -11.75124 -11.60192 -11.54288 -11.45422 -11.02601 -10.92298 -10.62764 -10.20446 -9.87530 -9.49377 -9.05005 -8.12822 -7.67411 -6.42335 -5.53684 1.27965 1.99348 2.59835 2.66973 2.74747 2.85507 3.07819 3.34283 3.82291 3.99439 4.02684 4.15427 4.20071 4.41864 5.03000 5.09060 5.12872 5.39898 5.44924 5.51304 5.56888 5.63991 5.74409 6.13368 6.18110 6.36370 6.45375 6.58980 6.84700 7.00769 7.22941 7.55555 7.62166 7.73408 8.25671 8.49749 8.52661 8.93762 9.08951 9.13006 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.014696 B = 0.008198 C = 0.006102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1904.819438 B = 3414.451054 C = 4587.620632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.481 5.481 3 C 0.003 3.997 4 C 0.165 3.835 5 N -0.660 5.660 6 C 0.384 3.616 7 C -0.380 4.380 8 H 0.110 0.890 9 C 0.071 3.929 10 N -0.712 5.712 11 Si 0.918 3.082 12 H -0.247 1.247 13 H -0.263 1.263 14 H -0.261 1.261 15 C -0.314 4.314 16 C 0.324 3.676 17 N -0.534 5.534 18 C 0.312 3.688 19 N -0.536 5.536 20 C -0.030 4.030 21 C -0.229 4.229 22 C 0.499 3.501 23 O -0.586 6.586 24 H 0.067 0.933 25 H 0.086 0.914 26 H 0.078 0.922 27 H 0.150 0.850 28 H 0.402 0.598 29 H 0.300 0.700 30 H 0.146 0.854 31 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.398 -2.410 5.430 9.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.194 5.194 3 C -0.126 4.126 4 C 0.061 3.939 5 N -0.285 5.285 6 C 0.279 3.721 7 C -0.408 4.408 8 H 0.128 0.872 9 C -0.161 4.161 10 N -0.330 5.330 11 Si 0.740 3.260 12 H -0.170 1.170 13 H -0.187 1.187 14 H -0.185 1.185 15 C -0.332 4.332 16 C 0.016 3.984 17 N -0.216 5.216 18 C 0.005 3.995 19 N -0.218 5.218 20 C -0.054 4.054 21 C -0.251 4.251 22 C 0.302 3.698 23 O -0.472 6.472 24 H 0.085 0.915 25 H 0.105 0.895 26 H 0.097 0.903 27 H 0.168 0.832 28 H 0.239 0.761 29 H 0.112 0.888 30 H 0.164 0.836 31 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -6.974 -2.448 4.256 8.529 hybrid contribution -0.224 0.123 1.133 1.162 sum -7.198 -2.326 5.389 9.288 Atomic orbital electron populations 1.21933 0.78207 1.04043 1.02966 1.44684 1.08144 1.06152 1.60465 1.20591 0.91780 0.89128 1.11130 1.16547 0.89402 0.86668 1.01242 1.41034 1.04046 1.04398 1.79032 1.16667 0.80330 0.86437 0.88669 1.20461 0.98578 1.29048 0.92753 0.87181 1.26464 0.94133 0.93543 1.01958 1.69532 1.08590 1.25844 1.29048 0.85980 0.81426 0.79848 0.78785 1.16979 1.18722 1.18492 1.13027 0.84521 1.41234 0.94445 1.24745 0.91346 0.90556 0.91785 1.81074 1.12396 1.17879 1.10267 1.25174 0.92347 0.90476 0.91547 1.81070 1.09869 1.18307 1.12579 1.21598 1.01910 0.90742 0.91118 1.21946 0.92767 0.99356 1.11047 1.17006 0.89265 0.82754 0.80822 1.90890 1.70060 1.29900 1.56371 0.91483 0.89495 0.90335 0.83233 0.76088 0.88843 0.83588 0.83677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.81 10.36 59.84 0.62 1.43 16 2 N -0.48 -7.26 2.99 -126.99 -0.38 -7.64 16 3 C 0.00 0.04 10.13 -16.54 -0.17 -0.12 16 4 C 0.17 2.67 4.91 -83.92 -0.41 2.26 16 5 N -0.66 -11.00 3.30 -8.33 -0.03 -11.03 16 6 C 0.38 7.11 5.00 -83.57 -0.42 6.69 16 7 C -0.38 -6.99 7.01 -38.31 -0.27 -7.26 16 8 H 0.11 2.09 7.05 -52.49 -0.37 1.72 16 9 C 0.07 1.21 4.81 -17.21 -0.08 1.12 16 10 N -0.71 -11.95 10.67 55.59 0.59 -11.36 16 11 Si 0.92 13.87 29.58 -169.99 -5.03 8.84 16 12 H -0.25 -3.86 7.11 56.52 0.40 -3.46 16 13 H -0.26 -3.98 7.11 56.52 0.40 -3.58 16 14 H -0.26 -4.02 7.11 56.52 0.40 -3.62 16 15 C -0.31 -6.33 5.88 -104.93 -0.62 -6.95 16 16 C 0.32 7.00 13.93 -22.47 -0.31 6.69 16 17 N -0.53 -12.18 18.54 41.84 0.78 -11.40 16 18 C 0.31 6.61 14.82 -22.48 -0.33 6.28 16 19 N -0.54 -11.99 18.54 41.84 0.78 -11.21 16 20 C -0.03 -0.49 8.59 -39.35 -0.34 -0.83 16 21 C -0.23 -3.81 9.98 -39.41 -0.39 -4.21 16 22 C 0.50 8.94 7.40 -15.47 -0.11 8.82 16 23 O -0.59 -12.08 16.64 4.83 0.08 -12.00 16 24 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.09 1.06 7.39 -51.93 -0.38 0.68 16 26 H 0.08 0.68 8.02 -51.93 -0.42 0.27 16 27 H 0.15 1.78 8.04 -52.49 -0.42 1.36 16 28 H 0.40 6.33 8.83 -40.82 -0.36 5.97 16 29 H 0.30 4.64 8.29 -40.82 -0.34 4.31 16 30 H 0.15 2.40 6.31 -52.49 -0.33 2.07 16 31 H 0.15 2.19 8.06 -52.49 -0.42 1.77 16 LS Contribution 294.51 15.07 4.44 4.44 Total: -1.00 -25.81 294.51 -3.87 -29.68 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: -2.26 Total: 7.75 kcal Atomic # 6 Polarization: 16.76 SS G_CDS: -2.84 Total: 13.92 kcal Atomic # 7 Polarization: -54.37 SS G_CDS: 1.74 Total: -52.64 kcal Atomic # 8 Polarization: -12.08 SS G_CDS: 0.08 Total: -12.00 kcal Atomic # 14 Polarization: 13.87 SS G_CDS: -5.03 Total: 8.84 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -25.81 -3.87 -29.68 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169079639.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.212 kcal (2) G-P(sol) polarization free energy of solvation -25.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.681 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds