Wall clock time and date at job start Mon Mar 30 2020 01:32:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.43203 * 119.99419 * 175.19459 * 3 2 1 5 5 N 3.51035 * 140.69316 * 175.19346 * 2 1 3 6 6 C 1.41160 * 120.00404 * 355.19192 * 3 2 1 7 7 C 1.39004 * 119.99936 * 354.78865 * 6 3 2 8 8 H 1.08001 * 119.99886 * 19.69624 * 7 6 3 9 9 C 1.40830 * 119.99863 * 199.69416 * 7 6 3 10 10 N 1.30334 * 120.00084 * 9.94926 * 9 7 6 11 11 Si 1.86802 * 119.99802 * 189.95128 * 9 7 6 12 12 H 1.48502 * 109.47217 * 359.97438 * 11 9 7 13 13 H 1.48494 * 109.47229 * 120.00246 * 11 9 7 14 14 H 1.48505 * 109.47010 * 240.00022 * 11 9 7 15 15 N 1.38289 * 120.00068 * 174.79091 * 6 3 2 16 16 C 1.39783 * 119.99861 * 240.27102 * 15 6 3 17 17 C 1.39280 * 120.87646 * 7.45424 * 16 15 6 18 18 N 1.32263 * 119.00691 * 179.97438 * 17 16 15 19 19 C 1.31791 * 120.89975 * 359.97438 * 18 17 16 20 20 C 1.50704 * 119.02944 * 179.97438 * 19 18 17 21 21 N 1.46894 * 109.47267 * 89.99999 * 20 19 18 22 22 N 1.31793 * 121.93734 * 359.97438 * 19 18 17 23 23 C 1.32262 * 120.89944 * 0.02562 * 22 19 18 24 24 H 0.97002 * 120.00060 * 184.98004 * 10 9 7 25 25 H 0.96997 * 119.99744 * 60.27220 * 15 6 3 26 26 H 1.07996 * 120.49663 * 359.97438 * 17 16 15 27 27 H 1.09000 * 109.46761 * 209.99670 * 20 19 18 28 28 H 1.08992 * 109.47109 * 329.99258 * 20 19 18 29 29 H 1.00904 * 110.99941 * 180.02562 * 21 20 19 30 30 H 1.00903 * 111.00055 * 303.94922 * 21 20 19 31 31 H 1.07999 * 120.49541 * 180.02562 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2834 1.2368 -0.1039 5 7 3.8522 2.2159 -0.1863 6 6 3.2744 -1.2172 0.1025 7 6 2.5843 -2.4055 0.3121 8 1 1.5302 -2.4650 0.0848 9 6 3.2598 -3.5316 0.8209 10 7 4.4751 -3.4119 1.2763 11 14 2.4138 -5.1970 0.8429 12 1 1.0480 -5.0659 0.2749 13 1 3.1980 -6.1613 0.0305 14 1 2.3226 -5.6874 2.2417 15 7 4.6531 -1.2281 -0.0057 16 6 5.2686 -1.9642 -1.0221 17 6 4.5138 -2.5666 -2.0258 18 7 5.1346 -3.2542 -2.9699 19 6 6.4472 -3.3723 -2.9690 20 6 7.1108 -4.1660 -4.0649 21 7 7.4302 -3.2763 -5.1892 22 7 7.1965 -2.8168 -2.0380 23 6 6.6530 -2.1129 -1.0590 24 1 4.9666 -4.1988 1.5595 25 1 5.1929 -0.7249 0.6238 26 1 3.4379 -2.4736 -2.0331 27 1 8.0285 -4.6142 -3.6841 28 1 6.4360 -4.9521 -4.4037 29 1 7.8760 -3.7854 -5.9378 30 1 6.6044 -2.7991 -5.5186 31 1 7.2733 -1.6601 -0.2997 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169083743.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:04 Heat of formation + Delta-G solvation = 105.932288 kcal Electronic energy + Delta-G solvation = -19448.509353 eV Core-core repulsion = 16343.890085 eV Total energy + Delta-G solvation = -3104.619268 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.092 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.58935 -37.83841 -35.55104 -34.86509 -34.61676 -33.66015 -33.10725 -31.35389 -28.79797 -27.33301 -25.23196 -24.17754 -22.16675 -21.25834 -19.18562 -17.78556 -17.37391 -16.69791 -16.34111 -16.09957 -15.28658 -15.12704 -14.67449 -13.94278 -13.62101 -13.15593 -12.91716 -12.83693 -12.71418 -12.43471 -12.11051 -11.97092 -11.80657 -11.70341 -11.65834 -11.23997 -11.06925 -10.94212 -10.79899 -10.37297 -10.25175 -10.21879 -8.71378 -8.69935 -8.43570 -7.92332 -6.95851 -5.60435 1.49701 1.63214 2.11707 2.62135 2.71729 2.75907 3.30008 3.68179 3.78709 3.95842 4.07185 4.22402 4.24746 4.49014 4.68901 4.92418 5.04394 5.09184 5.39507 5.49012 5.53997 5.62079 5.89272 6.04999 6.20291 6.39105 6.70682 6.90806 7.07680 7.11665 7.40650 7.45340 7.53604 7.61365 8.05302 8.24775 8.67425 8.84217 9.00714 9.03868 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.014306 B = 0.007667 C = 0.005886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1956.812835 B = 3651.162312 C = 4756.067501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C 0.323 3.677 3 C -0.307 4.307 4 C 0.308 3.692 5 N -0.529 5.529 6 C 0.375 3.625 7 C -0.378 4.378 8 H 0.114 0.886 9 C 0.071 3.929 10 N -0.718 5.718 11 Si 0.920 3.080 12 H -0.245 1.245 13 H -0.261 1.261 14 H -0.262 1.262 15 N -0.643 5.643 16 C 0.166 3.834 17 C 0.082 3.918 18 N -0.481 5.481 19 C 0.227 3.773 20 C 0.146 3.854 21 N -0.842 5.842 22 N -0.466 5.466 23 C 0.070 3.930 24 H 0.303 0.697 25 H 0.406 0.594 26 H 0.171 0.829 27 H 0.088 0.912 28 H 0.046 0.954 29 H 0.342 0.658 30 H 0.344 0.656 31 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.681 -8.867 -3.304 11.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.210 5.210 2 C 0.015 3.985 3 C -0.325 4.325 4 C 0.000 4.000 5 N -0.211 5.211 6 C 0.271 3.729 7 C -0.406 4.406 8 H 0.132 0.868 9 C -0.160 4.160 10 N -0.336 5.336 11 Si 0.741 3.259 12 H -0.168 1.168 13 H -0.185 1.185 14 H -0.186 1.186 15 N -0.263 5.263 16 C 0.055 3.945 17 C -0.090 4.090 18 N -0.194 5.194 19 C -0.042 4.042 20 C 0.014 3.986 21 N -0.374 5.374 22 N -0.179 5.179 23 C -0.102 4.102 24 H 0.115 0.885 25 H 0.243 0.757 26 H 0.188 0.812 27 H 0.106 0.894 28 H 0.064 0.936 29 H 0.155 0.845 30 H 0.156 0.844 31 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 5.784 -7.609 -3.462 10.165 hybrid contribution -0.843 -1.005 0.748 1.510 sum 4.940 -8.614 -2.714 10.294 Atomic orbital electron populations 1.81079 1.12183 1.08718 1.19005 1.24665 0.91282 0.92159 0.90393 1.12929 0.83095 0.86403 1.50099 1.25139 0.92528 0.91891 0.90399 1.81061 1.09758 1.10972 1.19313 1.16786 0.80115 0.90649 0.85355 1.20373 0.98724 0.94245 1.27225 0.86830 1.26477 0.94970 1.02968 0.91604 1.69476 1.09924 1.34598 1.19627 0.85946 0.81511 0.78391 0.80063 1.16770 1.18491 1.18595 1.41284 1.04792 1.50000 1.30254 1.19347 0.93824 0.91873 0.89436 1.22971 1.01085 0.95358 0.89630 1.67956 1.11253 1.15450 1.24787 1.22323 0.86222 0.99585 0.96064 1.20130 0.98523 0.91714 0.88229 1.58626 1.33212 1.33718 1.11799 1.67889 1.40824 1.07170 1.02029 1.22553 0.90712 0.99229 0.97742 0.88507 0.75657 0.81151 0.89391 0.93611 0.84501 0.84380 0.82422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.53 -12.02 18.54 41.84 0.78 -11.24 16 2 C 0.32 7.01 13.89 -22.47 -0.31 6.70 16 3 C -0.31 -6.28 5.88 -104.93 -0.62 -6.90 16 4 C 0.31 6.59 14.80 -22.50 -0.33 6.26 16 5 N -0.53 -11.92 18.53 41.81 0.77 -11.14 16 6 C 0.37 7.12 5.01 -83.56 -0.42 6.70 16 7 C -0.38 -7.11 7.06 -38.32 -0.27 -7.38 16 8 H 0.11 2.19 6.99 -52.49 -0.37 1.82 16 9 C 0.07 1.26 4.78 -17.21 -0.08 1.18 16 10 N -0.72 -12.62 10.92 55.59 0.61 -12.02 16 11 Si 0.92 14.25 29.58 -169.99 -5.03 9.22 16 12 H -0.25 -3.89 7.11 56.52 0.40 -3.48 16 13 H -0.26 -4.13 7.11 56.52 0.40 -3.72 16 14 H -0.26 -4.04 7.11 56.52 0.40 -3.64 16 15 N -0.64 -11.24 3.34 -8.00 -0.03 -11.26 16 16 C 0.17 2.88 5.09 -83.46 -0.42 2.46 16 17 C 0.08 1.48 9.86 -16.98 -0.17 1.31 16 18 N -0.48 -8.50 10.32 -10.57 -0.11 -8.61 16 19 C 0.23 3.83 7.15 -157.20 -1.12 2.71 16 20 C 0.15 1.94 7.21 -4.98 -0.04 1.91 16 21 N -0.84 -10.11 9.61 -11.41 -0.11 -10.22 16 22 N -0.47 -8.12 10.32 -10.57 -0.11 -8.23 16 23 C 0.07 1.16 11.21 -16.98 -0.19 0.97 16 24 H 0.30 4.95 8.29 -40.82 -0.34 4.61 16 25 H 0.41 6.73 8.84 -40.82 -0.36 6.37 16 26 H 0.17 3.07 6.42 -52.49 -0.34 2.73 16 27 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 28 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.34 3.05 9.08 -39.29 -0.36 2.69 16 30 H 0.34 4.17 8.99 -39.29 -0.35 3.81 16 31 H 0.16 2.27 8.06 -52.49 -0.42 1.84 16 LS Contribution 297.38 15.07 4.48 4.48 Total: -1.00 -24.36 297.38 -4.90 -29.26 By element: Atomic # 1 Polarization: 16.03 SS G_CDS: -2.18 Total: 13.85 kcal Atomic # 6 Polarization: 19.89 SS G_CDS: -3.98 Total: 15.92 kcal Atomic # 7 Polarization: -74.53 SS G_CDS: 1.80 Total: -72.73 kcal Atomic # 14 Polarization: 14.25 SS G_CDS: -5.03 Total: 9.22 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -24.36 -4.90 -29.26 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169083743.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.191 kcal (2) G-P(sol) polarization free energy of solvation -24.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.259 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds