Wall clock time and date at job start Mon Mar 30 2020 01:32:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.43203 * 119.99419 * 175.19459 * 3 2 1 5 5 N 3.51035 * 140.69316 * 175.19346 * 2 1 3 6 6 C 1.41160 * 120.00404 * 355.19192 * 3 2 1 7 7 C 1.39004 * 119.99936 * 354.78865 * 6 3 2 8 8 H 1.08001 * 119.99886 * 19.69624 * 7 6 3 9 9 C 1.40830 * 119.99863 * 199.69416 * 7 6 3 10 10 N 1.30334 * 120.00084 * 9.94926 * 9 7 6 11 11 Si 1.86802 * 119.99802 * 189.95128 * 9 7 6 12 12 H 1.48502 * 109.47217 * 359.97438 * 11 9 7 13 13 H 1.48494 * 109.47229 * 120.00246 * 11 9 7 14 14 H 1.48505 * 109.47010 * 240.00022 * 11 9 7 15 15 N 1.38289 * 120.00068 * 174.79091 * 6 3 2 16 16 C 1.39783 * 119.99861 * 240.27102 * 15 6 3 17 17 C 1.39280 * 120.87646 * 7.45424 * 16 15 6 18 18 N 1.32263 * 119.00691 * 179.97438 * 17 16 15 19 19 C 1.31791 * 120.89975 * 359.97438 * 18 17 16 20 20 C 1.50704 * 119.02944 * 179.97438 * 19 18 17 21 21 N 1.46894 * 109.47267 * 89.99999 * 20 19 18 22 22 N 1.31793 * 121.93734 * 359.97438 * 19 18 17 23 23 C 1.32262 * 120.89944 * 0.02562 * 22 19 18 24 24 H 0.97002 * 120.00060 * 184.98004 * 10 9 7 25 25 H 0.96997 * 119.99744 * 60.27220 * 15 6 3 26 26 H 1.07996 * 120.49663 * 359.97438 * 17 16 15 27 27 H 1.09000 * 109.46761 * 209.99670 * 20 19 18 28 28 H 1.08992 * 109.47109 * 329.99258 * 20 19 18 29 29 H 1.00904 * 110.99941 * 180.02562 * 21 20 19 30 30 H 1.00903 * 111.00055 * 303.94922 * 21 20 19 31 31 H 1.07999 * 120.49541 * 180.02562 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2834 1.2368 -0.1039 5 7 3.8522 2.2159 -0.1863 6 6 3.2744 -1.2172 0.1025 7 6 2.5843 -2.4055 0.3121 8 1 1.5302 -2.4650 0.0848 9 6 3.2598 -3.5316 0.8209 10 7 4.4751 -3.4119 1.2763 11 14 2.4138 -5.1970 0.8429 12 1 1.0480 -5.0659 0.2749 13 1 3.1980 -6.1613 0.0305 14 1 2.3226 -5.6874 2.2417 15 7 4.6531 -1.2281 -0.0057 16 6 5.2686 -1.9642 -1.0221 17 6 4.5138 -2.5666 -2.0258 18 7 5.1346 -3.2542 -2.9699 19 6 6.4472 -3.3723 -2.9690 20 6 7.1108 -4.1660 -4.0649 21 7 7.4302 -3.2763 -5.1892 22 7 7.1965 -2.8168 -2.0380 23 6 6.6530 -2.1129 -1.0590 24 1 4.9666 -4.1988 1.5595 25 1 5.1929 -0.7249 0.6238 26 1 3.4379 -2.4736 -2.0331 27 1 8.0285 -4.6142 -3.6841 28 1 6.4360 -4.9521 -4.4037 29 1 7.8760 -3.7854 -5.9378 30 1 6.6044 -2.7991 -5.5186 31 1 7.2733 -1.6601 -0.2997 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169083743.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:04 Heat of formation + Delta-G solvation = 90.091680 kcal Electronic energy + Delta-G solvation = -19449.196253 eV Core-core repulsion = 16343.890085 eV Total energy + Delta-G solvation = -3105.306168 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.092 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.92668 -39.28998 -37.17603 -36.56834 -35.82557 -34.98403 -34.45157 -32.80253 -30.12882 -28.87823 -26.42580 -25.53107 -23.50805 -22.64343 -20.74836 -19.21978 -18.86430 -17.92008 -17.73654 -17.43598 -16.56029 -16.42403 -15.82097 -15.28661 -14.83383 -14.64064 -14.43355 -14.33387 -14.02617 -13.93272 -13.50880 -13.41101 -13.37144 -13.23252 -13.07184 -12.80069 -12.73979 -12.22932 -12.13236 -11.80381 -11.61749 -11.57504 -10.07412 -9.93980 -9.62885 -9.31710 -8.36626 -7.18059 0.12372 0.27282 0.71586 1.33865 1.48113 1.49796 2.00996 2.05267 2.22880 2.26580 2.55339 2.69019 2.94818 3.25263 3.39055 3.42327 3.73585 3.84589 3.93532 4.09771 4.35055 4.55040 4.58550 4.63597 4.78563 5.06391 5.30203 5.42312 5.67110 5.96696 6.08939 6.14952 6.18155 6.61141 6.64624 6.82409 7.17322 7.32821 7.34514 7.63300 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.014306 B = 0.007667 C = 0.005886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1956.812835 B = 3651.162312 C = 4756.067501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C 0.329 3.671 3 C -0.320 4.320 4 C 0.317 3.683 5 N -0.555 5.555 6 C 0.374 3.626 7 C -0.372 4.372 8 H 0.107 0.893 9 C 0.051 3.949 10 N -0.716 5.716 11 Si 0.968 3.032 12 H -0.252 1.252 13 H -0.262 1.262 14 H -0.256 1.256 15 N -0.640 5.640 16 C 0.158 3.842 17 C 0.070 3.930 18 N -0.489 5.489 19 C 0.222 3.778 20 C 0.148 3.852 21 N -0.848 5.848 22 N -0.477 5.477 23 C 0.073 3.927 24 H 0.312 0.688 25 H 0.410 0.590 26 H 0.166 0.834 27 H 0.097 0.903 28 H 0.058 0.942 29 H 0.360 0.640 30 H 0.343 0.657 31 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.697 -10.424 -3.354 12.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.238 5.238 2 C 0.022 3.978 3 C -0.339 4.339 4 C 0.010 3.990 5 N -0.238 5.238 6 C 0.270 3.730 7 C -0.399 4.399 8 H 0.125 0.875 9 C -0.181 4.181 10 N -0.334 5.334 11 Si 0.788 3.212 12 H -0.175 1.175 13 H -0.186 1.186 14 H -0.180 1.180 15 N -0.261 5.261 16 C 0.049 3.951 17 C -0.102 4.102 18 N -0.203 5.203 19 C -0.048 4.048 20 C 0.016 3.984 21 N -0.381 5.381 22 N -0.190 5.190 23 C -0.099 4.099 24 H 0.125 0.875 25 H 0.248 0.752 26 H 0.183 0.817 27 H 0.115 0.885 28 H 0.076 0.924 29 H 0.175 0.825 30 H 0.155 0.845 31 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 6.825 -9.163 -3.523 11.956 hybrid contribution -1.065 -0.643 0.751 1.453 sum 5.760 -9.806 -2.772 11.706 Atomic orbital electron populations 1.81067 1.12804 1.09390 1.20502 1.24850 0.91493 0.91567 0.89886 1.12959 0.82553 0.86645 1.51766 1.25236 0.92108 0.91754 0.89856 1.81054 1.10488 1.11488 1.20751 1.16710 0.80813 0.90130 0.85365 1.20498 0.98554 0.94704 1.26131 0.87469 1.26885 0.95377 1.04385 0.91426 1.69448 1.10043 1.35692 1.18195 0.85239 0.80297 0.75656 0.80058 1.17515 1.18624 1.18014 1.41162 1.04155 1.50306 1.30497 1.19358 0.94146 0.92258 0.89379 1.22979 1.01092 0.95944 0.90186 1.68005 1.11773 1.15755 1.24769 1.23042 0.86118 0.99054 0.96539 1.20196 0.98890 0.91579 0.87743 1.58585 1.33262 1.33925 1.12290 1.67999 1.40964 1.07656 1.02423 1.22939 0.90646 0.98467 0.97843 0.87516 0.75182 0.81730 0.88516 0.92430 0.82451 0.84503 0.80302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.55 -25.34 18.54 19.00 0.35 -24.99 16 2 C 0.33 14.31 13.89 88.33 1.23 15.54 16 3 C -0.32 -13.07 5.88 -20.07 -0.12 -13.19 16 4 C 0.32 13.55 14.80 88.34 1.31 14.86 16 5 N -0.55 -24.96 18.53 19.00 0.35 -24.61 16 6 C 0.37 13.99 5.01 39.03 0.20 14.19 16 7 C -0.37 -13.64 7.06 23.09 0.16 -13.48 16 8 H 0.11 4.07 6.99 -2.91 -0.02 4.05 16 9 C 0.05 1.71 4.78 85.55 0.41 2.12 16 10 N -0.72 -23.72 10.92 21.98 0.24 -23.48 16 11 Si 0.97 27.59 29.58 68.60 2.03 29.62 16 12 H -0.25 -7.47 7.11 99.48 0.71 -6.76 16 13 H -0.26 -7.54 7.11 99.48 0.71 -6.83 16 14 H -0.26 -7.10 7.11 99.48 0.71 -6.39 16 15 N -0.64 -21.75 3.34 -179.21 -0.60 -22.35 16 16 C 0.16 5.32 5.09 38.38 0.20 5.51 16 17 C 0.07 2.45 9.86 84.88 0.84 3.29 16 18 N -0.49 -16.69 10.32 -187.35 -1.93 -18.62 16 19 C 0.22 7.09 7.15 138.75 0.99 8.08 16 20 C 0.15 3.61 7.21 85.56 0.62 4.23 16 21 N -0.85 -18.59 9.61 -190.02 -1.83 -20.41 16 22 N -0.48 -15.73 10.32 -187.35 -1.93 -17.66 16 23 C 0.07 2.31 11.21 84.88 0.95 3.27 16 24 H 0.31 9.43 8.29 -92.71 -0.77 8.67 16 25 H 0.41 13.16 8.84 -92.71 -0.82 12.34 16 26 H 0.17 5.89 6.42 -2.91 -0.02 5.87 16 27 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 28 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 29 H 0.36 5.57 9.08 -89.69 -0.81 4.76 16 30 H 0.34 7.74 8.99 -89.69 -0.81 6.93 16 31 H 0.18 4.75 8.06 -2.91 -0.02 4.72 16 Total: -1.00 -49.59 297.38 2.27 -47.33 By element: Atomic # 1 Polarization: 31.97 SS G_CDS: -1.19 Total: 30.78 kcal Atomic # 6 Polarization: 37.63 SS G_CDS: 6.78 Total: 44.41 kcal Atomic # 7 Polarization: -146.78 SS G_CDS: -5.35 Total: -152.13 kcal Atomic # 14 Polarization: 27.59 SS G_CDS: 2.03 Total: 29.62 kcal Total: -49.59 2.27 -47.33 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169083743.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.417 kcal (2) G-P(sol) polarization free energy of solvation -49.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.326 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds