Wall clock time and date at job start Mon Mar 30 2020 00:51:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38445 * 120.44570 * 2 1 4 4 C 1.38771 * 118.51579 * 179.77103 * 3 2 1 5 5 C 1.38162 * 119.31867 * 0.51399 * 4 3 2 6 6 N 1.31964 * 120.83316 * 359.45323 * 5 4 3 7 7 O 1.41609 * 119.18823 * 180.27775 * 6 5 4 8 8 C 1.32504 * 121.62153 * 0.29699 * 6 5 4 9 9 N 1.39367 * 119.70496 * 180.02562 * 8 6 5 10 10 C 1.38344 * 120.00150 * 352.64475 * 9 8 6 11 11 C 1.38990 * 120.00403 * 290.09529 * 10 9 8 12 12 H 1.07995 * 119.99970 * 162.18097 * 11 10 9 13 13 C 1.40831 * 119.99575 * 342.17968 * 11 10 9 14 14 N 1.30338 * 120.00417 * 355.45459 * 13 11 10 15 15 Si 1.86800 * 120.00037 * 175.45427 * 13 11 10 16 16 H 1.48499 * 109.47177 * 59.99629 * 15 13 11 17 17 H 1.48503 * 109.47598 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.46850 * 299.99799 * 15 13 11 19 19 C 1.41152 * 119.99838 * 110.08882 * 10 9 8 20 20 C 1.43207 * 120.00117 * 177.47030 * 19 10 9 21 21 N 7.06380 * 106.46066 * 174.71897 * 2 1 3 22 22 C 1.43203 * 120.00032 * 357.46716 * 19 10 9 23 23 N 5.03125 * 88.11821 * 140.13076 * 2 1 3 24 24 H 1.09002 * 109.47141 * 269.97761 * 1 2 3 25 25 H 1.09000 * 109.47121 * 29.97817 * 1 2 3 26 26 H 1.09003 * 109.47370 * 149.97906 * 1 2 3 27 27 H 1.08001 * 120.73754 * 0.02562 * 3 2 1 28 28 H 1.07999 * 120.33928 * 180.23888 * 4 3 2 29 29 H 1.07998 * 119.57796 * 179.72761 * 5 4 3 30 30 H 0.97006 * 120.00199 * 172.65202 * 9 8 6 31 31 H 0.97000 * 120.00238 * 185.03790 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2085 1.1935 0.0000 4 6 3.5954 1.1468 0.0049 5 6 4.2310 -0.0799 -0.0013 6 7 3.5361 -1.2017 -0.0008 7 8 4.2234 -2.4398 -0.0013 8 6 2.2110 -1.1982 -0.0004 9 7 1.5172 -2.4068 0.0006 10 6 2.2032 -3.5984 -0.1523 11 6 2.7782 -3.9173 -1.3769 12 1 3.5411 -4.6795 -1.4331 13 6 2.3657 -3.2463 -2.5443 14 7 1.3842 -2.3903 -2.4919 15 14 3.2253 -3.5830 -4.1682 16 1 3.0869 -5.0208 -4.5129 17 1 2.6081 -2.7558 -5.2360 18 1 4.6650 -3.2395 -4.0467 19 6 2.3194 -4.4904 0.9355 20 6 2.9825 -5.7479 0.7627 21 7 3.5085 -6.7455 0.6235 22 6 1.7742 -4.1379 2.2119 23 7 1.3417 -3.8594 3.2235 24 1 -0.3633 -0.0004 1.0277 25 1 -0.3633 0.8902 -0.5135 26 1 -0.3634 -0.8898 -0.5142 27 1 1.6879 2.1398 0.0004 28 1 4.1720 2.0600 0.0089 29 1 5.3102 -0.1211 -0.0020 30 1 0.5531 -2.4126 0.1083 31 1 1.0518 -1.9829 -3.3070 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169084020.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:15 Heat of formation + Delta-G solvation = 134.384477 kcal Electronic energy + Delta-G solvation = -20362.000706 eV Core-core repulsion = 17226.322466 eV Total energy + Delta-G solvation = -3135.678239 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.086 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.88579 -37.27255 -35.13945 -34.66257 -34.50390 -33.67841 -31.66329 -29.85793 -28.39966 -27.21944 -26.87179 -23.36129 -22.29353 -21.23068 -18.99811 -17.77170 -17.23057 -16.40999 -16.11872 -15.83952 -15.05582 -14.82057 -14.27586 -13.84031 -13.63082 -12.98443 -12.62376 -12.60614 -12.43627 -12.16042 -11.70916 -11.61231 -11.52632 -11.44711 -11.33561 -11.19119 -10.93128 -10.76195 -10.67444 -10.35940 -10.06469 -9.94142 -8.77888 -8.03532 -7.58343 -7.18754 -6.84677 -5.06820 1.17424 1.42021 2.34446 2.77292 2.82138 2.99662 3.12969 3.52586 3.78890 3.90561 4.07859 4.24242 4.48162 4.56784 4.78880 4.98888 5.04023 5.14299 5.41604 5.50143 5.64012 5.73489 5.82533 6.08525 6.10921 6.29533 6.38267 6.47366 6.57328 7.13776 7.26628 7.36460 7.80049 7.95176 8.09595 8.30205 8.54000 9.14068 9.33401 9.37383 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.013367 B = 0.010867 C = 0.007703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2094.213700 B = 2575.873082 C = 3634.108546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.160 4.160 3 C -0.050 4.050 4 C -0.203 4.203 5 C 0.106 3.894 6 N -0.167 5.167 7 O -0.525 6.525 8 C 0.429 3.571 9 N -0.624 5.624 10 C 0.414 3.586 11 C -0.323 4.323 12 H 0.107 0.893 13 C 0.070 3.930 14 N -0.754 5.754 15 Si 0.927 3.073 16 H -0.253 1.253 17 H -0.272 1.272 18 H -0.253 1.253 19 C -0.306 4.306 20 C 0.332 3.668 21 N -0.543 5.543 22 C 0.313 3.687 23 N -0.548 5.548 24 H 0.069 0.931 25 H 0.071 0.929 26 H 0.077 0.923 27 H 0.139 0.861 28 H 0.147 0.853 29 H 0.170 0.830 30 H 0.416 0.584 31 H 0.297 0.703 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.302 14.260 -5.614 15.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.167 4.167 3 C -0.075 4.075 4 C -0.226 4.226 5 C -0.040 4.040 6 N 0.142 4.858 7 O -0.574 6.574 8 C 0.200 3.800 9 N -0.250 5.250 10 C 0.312 3.688 11 C -0.351 4.351 12 H 0.125 0.875 13 C -0.157 4.157 14 N -0.376 5.376 15 Si 0.750 3.250 16 H -0.177 1.177 17 H -0.197 1.197 18 H -0.176 1.176 19 C -0.325 4.325 20 C 0.025 3.975 21 N -0.226 5.226 22 C 0.007 3.993 23 N -0.232 5.232 24 H 0.088 0.912 25 H 0.090 0.910 26 H 0.096 0.904 27 H 0.157 0.843 28 H 0.164 0.836 29 H 0.187 0.813 30 H 0.257 0.743 31 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -2.975 12.765 -4.401 13.826 hybrid contribution 0.194 0.263 -1.125 1.172 sum -2.781 13.028 -5.525 14.422 Atomic orbital electron populations 1.20585 0.89145 1.03774 1.02294 1.19594 0.97409 0.89867 1.09793 1.21226 0.93713 0.97466 0.95144 1.21254 0.94921 0.97103 1.09322 1.22268 0.99732 0.84245 0.97774 1.42964 1.03328 1.10732 1.28761 1.97698 1.67734 1.02444 1.89518 1.17659 0.82278 0.87555 0.92501 1.41445 1.08926 1.01466 1.73149 1.16378 0.82387 0.80023 0.90023 1.20094 1.12296 1.12602 0.90118 0.87533 1.26548 0.93967 0.91720 1.03455 1.69476 1.18395 1.17012 1.32730 0.85966 0.81098 0.80513 0.77471 1.17727 1.19671 1.17649 1.12837 1.33835 0.96846 0.88986 1.24665 0.90217 0.90920 0.91742 1.81022 1.17944 1.14025 1.09650 1.25228 0.90612 0.91709 0.91701 1.80967 1.18967 1.11460 1.11778 0.91223 0.90969 0.90389 0.84288 0.83562 0.81314 0.74342 0.89162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.13 9.53 36.00 0.34 -0.78 16 2 C -0.16 -2.26 5.91 -104.28 -0.62 -2.88 16 3 C -0.05 -0.57 9.85 -39.31 -0.39 -0.96 16 4 C -0.20 -2.35 10.11 -39.41 -0.40 -2.75 16 5 C 0.11 1.66 10.69 -17.52 -0.19 1.47 16 6 N -0.17 -3.41 3.59 -12.33 -0.04 -3.46 16 7 O -0.53 -13.72 14.98 -11.47 -0.17 -13.90 16 8 C 0.43 8.02 6.21 -154.63 -0.96 7.06 16 9 N -0.62 -12.46 2.86 -9.70 -0.03 -12.49 16 10 C 0.41 9.64 3.73 -83.54 -0.31 9.33 16 11 C -0.32 -7.62 6.47 -38.32 -0.25 -7.87 16 12 H 0.11 2.70 7.00 -52.49 -0.37 2.34 16 13 C 0.07 1.44 5.34 -17.21 -0.09 1.35 16 14 N -0.75 -14.36 10.89 55.59 0.61 -13.76 16 15 Si 0.93 16.59 29.57 -169.99 -5.03 11.56 16 16 H -0.25 -4.57 7.11 56.52 0.40 -4.17 16 17 H -0.27 -4.52 7.11 56.52 0.40 -4.12 16 18 H -0.25 -4.80 7.11 56.52 0.40 -4.40 16 19 C -0.31 -7.60 5.72 -104.94 -0.60 -8.20 16 20 C 0.33 8.64 13.90 -22.46 -0.31 8.33 16 21 N -0.54 -14.45 18.54 41.85 0.78 -13.68 16 22 C 0.31 7.77 14.81 -22.51 -0.33 7.43 16 23 N -0.55 -13.72 18.53 41.79 0.77 -12.94 16 24 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.07 0.63 8.10 -51.93 -0.42 0.21 16 26 H 0.08 0.94 6.68 -51.93 -0.35 0.60 16 27 H 0.14 1.07 8.06 -52.49 -0.42 0.64 16 28 H 0.15 1.13 8.06 -52.49 -0.42 0.71 16 29 H 0.17 2.31 8.06 -52.49 -0.42 1.89 16 30 H 0.42 7.40 6.92 -40.82 -0.28 7.12 16 31 H 0.30 5.10 8.29 -40.82 -0.34 4.76 16 LS Contribution 291.86 15.07 4.40 4.40 Total: -1.00 -31.79 291.86 -5.06 -36.85 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: -2.24 Total: 5.87 kcal Atomic # 6 Polarization: 15.64 SS G_CDS: -4.10 Total: 11.54 kcal Atomic # 7 Polarization: -58.40 SS G_CDS: 2.08 Total: -56.32 kcal Atomic # 8 Polarization: -13.72 SS G_CDS: -0.17 Total: -13.90 kcal Atomic # 14 Polarization: 16.59 SS G_CDS: -5.03 Total: 11.56 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -31.79 -5.06 -36.85 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169084020.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.236 kcal (2) G-P(sol) polarization free energy of solvation -31.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 139.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.852 kcal (6) G-S(sol) free energy of system = (1) + (5) 134.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds