Wall clock time and date at job start Mon Mar 30 2020 00:51:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38445 * 120.44570 * 2 1 4 4 C 1.38771 * 118.51579 * 179.77103 * 3 2 1 5 5 C 1.38162 * 119.31867 * 0.51399 * 4 3 2 6 6 N 1.31964 * 120.83316 * 359.45323 * 5 4 3 7 7 O 1.41609 * 119.18823 * 180.27775 * 6 5 4 8 8 C 1.32504 * 121.62153 * 0.29699 * 6 5 4 9 9 N 1.39367 * 119.70496 * 180.02562 * 8 6 5 10 10 C 1.38344 * 120.00150 * 352.64475 * 9 8 6 11 11 C 1.38990 * 120.00403 * 290.09529 * 10 9 8 12 12 H 1.07995 * 119.99970 * 162.18097 * 11 10 9 13 13 C 1.40831 * 119.99575 * 342.17968 * 11 10 9 14 14 N 1.30338 * 120.00417 * 355.45459 * 13 11 10 15 15 Si 1.86800 * 120.00037 * 175.45427 * 13 11 10 16 16 H 1.48499 * 109.47177 * 59.99629 * 15 13 11 17 17 H 1.48503 * 109.47598 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.46850 * 299.99799 * 15 13 11 19 19 C 1.41152 * 119.99838 * 110.08882 * 10 9 8 20 20 C 1.43207 * 120.00117 * 177.47030 * 19 10 9 21 21 N 7.06380 * 106.46066 * 174.71897 * 2 1 3 22 22 C 1.43203 * 120.00032 * 357.46716 * 19 10 9 23 23 N 5.03125 * 88.11821 * 140.13076 * 2 1 3 24 24 H 1.09002 * 109.47141 * 269.97761 * 1 2 3 25 25 H 1.09000 * 109.47121 * 29.97817 * 1 2 3 26 26 H 1.09003 * 109.47370 * 149.97906 * 1 2 3 27 27 H 1.08001 * 120.73754 * 0.02562 * 3 2 1 28 28 H 1.07999 * 120.33928 * 180.23888 * 4 3 2 29 29 H 1.07998 * 119.57796 * 179.72761 * 5 4 3 30 30 H 0.97006 * 120.00199 * 172.65202 * 9 8 6 31 31 H 0.97000 * 120.00238 * 185.03790 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2085 1.1935 0.0000 4 6 3.5954 1.1468 0.0049 5 6 4.2310 -0.0799 -0.0013 6 7 3.5361 -1.2017 -0.0008 7 8 4.2234 -2.4398 -0.0013 8 6 2.2110 -1.1982 -0.0004 9 7 1.5172 -2.4068 0.0006 10 6 2.2032 -3.5984 -0.1523 11 6 2.7782 -3.9173 -1.3769 12 1 3.5411 -4.6795 -1.4331 13 6 2.3657 -3.2463 -2.5443 14 7 1.3842 -2.3903 -2.4919 15 14 3.2253 -3.5830 -4.1682 16 1 3.0869 -5.0208 -4.5129 17 1 2.6081 -2.7558 -5.2360 18 1 4.6650 -3.2395 -4.0467 19 6 2.3194 -4.4904 0.9355 20 6 2.9825 -5.7479 0.7627 21 7 3.5085 -6.7455 0.6235 22 6 1.7742 -4.1379 2.2119 23 7 1.3417 -3.8594 3.2235 24 1 -0.3633 -0.0004 1.0277 25 1 -0.3633 0.8902 -0.5135 26 1 -0.3634 -0.8898 -0.5142 27 1 1.6879 2.1398 0.0004 28 1 4.1720 2.0600 0.0089 29 1 5.3102 -0.1211 -0.0020 30 1 0.5531 -2.4126 0.1083 31 1 1.0518 -1.9829 -3.3070 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169084020.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:15 Heat of formation + Delta-G solvation = 114.750554 kcal Electronic energy + Delta-G solvation = -20362.852096 eV Core-core repulsion = 17226.322466 eV Total energy + Delta-G solvation = -3136.529630 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.086 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.13761 -38.85754 -36.99933 -36.51816 -35.82914 -35.19102 -33.11158 -31.32153 -29.93055 -28.67579 -28.24353 -24.70240 -23.39115 -22.80636 -20.74051 -19.06087 -18.96620 -17.95703 -17.59115 -17.03268 -16.44277 -16.12379 -15.45222 -15.18441 -14.90923 -14.55403 -14.39996 -13.93485 -13.88614 -13.56041 -13.39751 -13.35150 -13.23264 -13.10060 -12.72698 -12.70313 -12.46365 -12.33584 -12.12336 -11.66995 -11.52620 -11.38789 -10.42087 -9.43090 -9.19263 -8.93623 -8.38417 -6.89813 0.05665 0.24053 0.76755 1.30194 1.36893 1.52605 1.86565 2.04373 2.09106 2.21350 2.33308 2.59331 2.65772 2.82724 3.50709 3.75271 3.91607 3.94154 4.02223 4.21243 4.44124 4.67626 4.76178 4.84586 4.92551 5.11814 5.21277 5.30851 5.50352 5.54137 5.62441 5.99712 6.10546 6.25676 6.47504 6.82841 6.97007 7.21274 7.36511 7.77205 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.013367 B = 0.010867 C = 0.007703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2094.213700 B = 2575.873082 C = 3634.108546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.158 4.158 3 C -0.030 4.030 4 C -0.170 4.170 5 C 0.078 3.922 6 N -0.197 5.197 7 O -0.597 6.597 8 C 0.399 3.601 9 N -0.632 5.632 10 C 0.415 3.585 11 C -0.334 4.334 12 H 0.074 0.926 13 C 0.045 3.955 14 N -0.731 5.731 15 Si 0.975 3.025 16 H -0.259 1.259 17 H -0.237 1.237 18 H -0.275 1.275 19 C -0.334 4.334 20 C 0.329 3.671 21 N -0.571 5.571 22 C 0.318 3.682 23 N -0.561 5.561 24 H 0.078 0.922 25 H 0.108 0.892 26 H 0.064 0.936 27 H 0.195 0.805 28 H 0.198 0.802 29 H 0.174 0.826 30 H 0.421 0.579 31 H 0.313 0.687 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.819 18.876 -7.194 20.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.164 4.164 3 C -0.055 4.055 4 C -0.191 4.191 5 C -0.066 4.066 6 N 0.110 4.890 7 O -0.644 6.644 8 C 0.171 3.829 9 N -0.261 5.261 10 C 0.312 3.688 11 C -0.361 4.361 12 H 0.092 0.908 13 C -0.183 4.183 14 N -0.352 5.352 15 Si 0.795 3.205 16 H -0.183 1.183 17 H -0.160 1.160 18 H -0.201 1.201 19 C -0.353 4.353 20 C 0.024 3.976 21 N -0.256 5.256 22 C 0.014 3.986 23 N -0.246 5.246 24 H 0.097 0.903 25 H 0.126 0.874 26 H 0.083 0.917 27 H 0.213 0.787 28 H 0.215 0.785 29 H 0.192 0.808 30 H 0.263 0.737 31 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -4.503 17.430 -5.973 18.968 hybrid contribution 0.640 -0.795 -0.719 1.249 sum -3.863 16.635 -6.692 18.342 Atomic orbital electron populations 1.20693 0.86919 1.04874 1.03225 1.20184 0.99024 0.89050 1.08131 1.21953 0.93636 0.98430 0.91446 1.21914 0.95616 0.96806 1.04769 1.22856 1.00736 0.84665 0.98324 1.43070 1.04069 1.10457 1.31415 1.97661 1.68646 1.05621 1.92521 1.18318 0.82064 0.88401 0.94089 1.41233 1.08984 1.00987 1.74899 1.16238 0.82486 0.80963 0.89118 1.20047 1.11700 1.12467 0.91871 0.90767 1.26939 0.94819 0.92007 1.04554 1.69406 1.16766 1.14802 1.34176 0.85309 0.79103 0.80570 0.75516 1.18344 1.15972 1.20056 1.13098 1.35218 0.97113 0.89889 1.25054 0.90031 0.91220 0.91275 1.80963 1.19373 1.14882 1.10352 1.25234 0.90381 0.91446 0.91571 1.80925 1.19925 1.11968 1.11765 0.90327 0.87373 0.91734 0.78743 0.78472 0.80830 0.73715 0.87442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.82 9.53 71.23 0.68 -1.14 16 2 C -0.16 -3.87 5.91 -19.64 -0.12 -3.99 16 3 C -0.03 -0.49 9.85 22.45 0.22 -0.27 16 4 C -0.17 -3.01 10.11 22.38 0.23 -2.79 16 5 C 0.08 2.32 10.69 84.65 0.90 3.23 16 6 N -0.20 -8.12 3.59 -192.93 -0.69 -8.82 16 7 O -0.60 -33.08 14.98 -38.80 -0.58 -33.66 16 8 C 0.40 14.59 6.21 132.87 0.82 15.41 16 9 N -0.63 -25.60 2.86 -184.59 -0.53 -26.13 16 10 C 0.42 20.26 3.73 39.01 0.15 20.40 16 11 C -0.33 -16.50 6.47 23.08 0.15 -16.35 16 12 H 0.07 4.08 7.00 -2.91 -0.02 4.06 16 13 C 0.05 1.87 5.34 85.55 0.46 2.32 16 14 N -0.73 -26.71 10.89 21.98 0.24 -26.47 16 15 Si 0.98 33.58 29.57 68.60 2.03 35.61 16 16 H -0.26 -9.13 7.11 99.48 0.71 -8.42 16 17 H -0.24 -6.82 7.11 99.48 0.71 -6.11 16 18 H -0.28 -10.46 7.11 99.48 0.71 -9.76 16 19 C -0.33 -17.56 5.72 -20.07 -0.11 -17.67 16 20 C 0.33 18.30 13.90 88.33 1.23 19.53 16 21 N -0.57 -32.22 18.54 19.01 0.35 -31.87 16 22 C 0.32 16.47 14.81 88.35 1.31 17.78 16 23 N -0.56 -28.83 18.53 18.99 0.35 -28.48 16 24 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 25 H 0.11 1.20 8.10 -2.39 -0.02 1.18 16 26 H 0.06 1.38 6.68 -2.39 -0.02 1.37 16 27 H 0.20 1.18 8.06 -2.91 -0.02 1.16 16 28 H 0.20 1.55 8.06 -2.91 -0.02 1.53 16 29 H 0.17 4.70 8.06 -2.91 -0.02 4.68 16 30 H 0.42 15.13 6.92 -92.70 -0.64 14.48 16 31 H 0.31 9.78 8.29 -92.71 -0.77 9.01 16 Total: -1.00 -76.52 291.86 7.65 -68.88 By element: Atomic # 1 Polarization: 13.91 SS G_CDS: 0.56 Total: 14.48 kcal Atomic # 6 Polarization: 30.55 SS G_CDS: 5.91 Total: 36.46 kcal Atomic # 7 Polarization: -121.49 SS G_CDS: -0.28 Total: -121.76 kcal Atomic # 8 Polarization: -33.08 SS G_CDS: -0.58 Total: -33.66 kcal Atomic # 14 Polarization: 33.58 SS G_CDS: 2.03 Total: 35.61 kcal Total: -76.52 7.65 -68.88 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169084020.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 183.626 kcal (2) G-P(sol) polarization free energy of solvation -76.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.875 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds