Wall clock time and date at job start Mon Mar 30 2020 00:45:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 N 1.36035 * 126.34450 * 250.05938 * 3 2 1 5 5 C 1.29991 * 109.29551 * 179.68657 * 4 3 2 6 6 N 1.36575 * 109.46334 * 0.44658 * 5 4 3 7 7 C 1.40272 * 126.21330 * 179.81842 * 6 5 4 8 8 C 1.38684 * 120.09754 * 64.67002 * 7 6 5 9 9 C 1.38192 * 120.00172 * 180.02562 * 8 7 6 10 10 C 1.38350 * 120.19987 * 0.02562 * 9 8 7 11 11 C 1.38145 * 120.19382 * 359.70352 * 10 9 8 12 12 C 1.38770 * 119.99270 * 0.55356 * 11 10 9 13 13 O 1.35763 * 120.09824 * 179.74935 * 12 11 10 14 14 C 1.34810 * 117.00241 * 5.59126 * 13 12 11 15 15 H 1.07997 * 119.99730 * 354.94551 * 14 13 12 16 16 C 1.38643 * 120.00435 * 174.66130 * 14 13 12 17 17 N 1.31573 * 119.99609 * 0.28397 * 16 14 13 18 18 Si 1.86795 * 120.00425 * 180.27755 * 16 14 13 19 19 H 1.48504 * 109.46899 * 60.00149 * 18 16 14 20 20 H 1.48496 * 109.47223 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.46966 * 300.00261 * 18 16 14 22 22 C 1.36703 * 107.56441 * 359.55393 * 6 5 4 23 23 N 1.38251 * 126.81989 * 180.24086 * 22 6 5 24 24 H 1.08002 * 125.26657 * 180.30309 * 5 4 3 25 25 H 1.07998 * 120.00111 * 0.04207 * 8 7 6 26 26 H 1.07996 * 119.89866 * 180.02562 * 9 8 7 27 27 H 1.07998 * 119.90741 * 179.97438 * 10 9 8 28 28 H 1.07998 * 120.00389 * 180.27158 * 11 10 9 29 29 H 0.96999 * 119.99702 * 180.02562 * 17 16 14 30 30 H 0.97007 * 120.00256 * 0.02562 * 23 22 6 31 31 H 0.97003 * 120.00005 * 180.02562 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 7 3.3740 0.3747 1.0300 5 6 4.6168 0.2390 0.6741 6 7 4.6746 -0.2213 -0.6105 7 6 5.8404 -0.4878 -1.3437 8 6 6.7005 -1.4979 -0.9395 9 6 7.8487 -1.7583 -1.6630 10 6 8.1446 -1.0137 -2.7909 11 6 7.2907 -0.0093 -3.2040 12 6 6.1382 0.2626 -2.4805 13 8 5.3002 1.2525 -2.8816 14 6 5.5830 1.8566 -4.0532 15 1 6.4876 1.6041 -4.5863 16 6 4.7096 2.7975 -4.5766 17 7 3.6075 3.1051 -3.9271 18 14 5.0976 3.6288 -6.2038 19 1 5.2010 2.6021 -7.2718 20 1 4.0143 4.5870 -6.5409 21 1 6.3862 4.3584 -6.0921 22 6 3.3899 -0.3808 -1.0497 23 7 2.9896 -0.8322 -2.2937 24 1 5.4714 0.4586 1.2969 25 1 6.4728 -2.0811 -0.0595 26 1 8.5171 -2.5455 -1.3470 27 1 9.0434 -1.2210 -3.3525 28 1 7.5225 0.5672 -4.0873 29 1 2.9962 3.7631 -4.2935 30 1 3.6533 -1.0739 -2.9586 31 1 2.0451 -0.9073 -2.5015 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001212597409.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:38 Heat of formation + Delta-G solvation = 79.357975 kcal Electronic energy + Delta-G solvation = -19831.472140 eV Core-core repulsion = 16693.407773 eV Total energy + Delta-G solvation = -3138.064367 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.086 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -43.08428 -40.68122 -38.24692 -37.42089 -35.79132 -34.69478 -34.25950 -30.96112 -30.01767 -29.25399 -27.37117 -24.48609 -23.96832 -23.02078 -21.72758 -20.01391 -19.85464 -18.94033 -17.91874 -17.19207 -16.96856 -16.52424 -16.20660 -15.83770 -15.53897 -15.38977 -15.22731 -14.80690 -14.52988 -14.03341 -13.98913 -13.63119 -13.55909 -13.09035 -12.64529 -12.56702 -12.41769 -12.21669 -12.14530 -11.46970 -11.28760 -10.82702 -10.69803 -9.70267 -9.05547 -8.46837 -8.45641 -6.14995 0.24272 0.64863 0.83764 1.35702 1.43892 1.45954 1.49793 1.60161 1.66035 2.13990 2.68804 2.76250 2.86973 3.06486 3.13190 3.34701 4.00391 4.11087 4.17096 4.27949 4.51945 4.56502 4.75165 4.94787 5.02975 5.10446 5.25533 5.53827 5.54540 5.71820 5.91511 5.96214 6.10194 6.48968 6.55399 6.65509 6.97083 6.99930 7.70232 8.71555 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.013433 B = 0.008562 C = 0.005674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2083.903898 B = 3269.569339 C = 4933.914196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.478 5.478 2 C 0.330 3.670 3 C -0.097 4.097 4 N -0.459 5.459 5 C 0.200 3.800 6 N -0.415 5.415 7 C 0.003 3.997 8 C -0.047 4.047 9 C -0.178 4.178 10 C -0.050 4.050 11 C -0.237 4.237 12 C 0.125 3.875 13 O -0.202 6.202 14 C -0.411 4.411 15 H 0.106 0.894 16 C -0.011 4.011 17 N -0.903 5.903 18 Si 1.007 2.993 19 H -0.256 1.256 20 H -0.283 1.283 21 H -0.259 1.259 22 C 0.391 3.609 23 N -0.816 5.816 24 H 0.249 0.751 25 H 0.153 0.847 26 H 0.161 0.839 27 H 0.152 0.848 28 H 0.127 0.873 29 H 0.268 0.732 30 H 0.408 0.592 31 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.163 -9.967 0.650 14.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.158 5.158 2 C 0.017 3.983 3 C -0.225 4.225 4 N -0.176 5.176 5 C -0.084 4.084 6 N -0.103 5.103 7 C -0.088 4.088 8 C -0.066 4.066 9 C -0.196 4.196 10 C -0.068 4.068 11 C -0.256 4.256 12 C 0.072 3.928 13 O -0.106 6.106 14 C -0.487 4.487 15 H 0.124 0.876 16 C -0.211 4.211 17 N -0.539 5.539 18 Si 0.828 3.172 19 H -0.180 1.180 20 H -0.208 1.208 21 H -0.184 1.184 22 C 0.162 3.838 23 N -0.361 5.361 24 H 0.265 0.735 25 H 0.170 0.830 26 H 0.179 0.821 27 H 0.170 0.830 28 H 0.145 0.855 29 H 0.077 0.923 30 H 0.237 0.763 31 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 8.791 -9.421 1.524 12.975 hybrid contribution 0.375 0.626 -1.928 2.061 sum 9.166 -8.795 -0.404 12.710 Atomic orbital electron populations 1.81149 1.11717 1.14023 1.08893 1.24034 0.90627 0.91206 0.92396 1.15069 0.85597 1.27372 0.94485 1.70295 1.00976 1.18969 1.27394 1.25542 0.96632 1.02839 0.83427 1.42249 1.02465 1.52292 1.13313 1.17065 0.91067 1.03475 0.97218 1.21092 0.93017 0.92744 0.99776 1.21110 0.98321 1.03341 0.96873 1.21379 0.97902 0.92015 0.95469 1.21267 0.96416 1.04228 1.03737 1.19887 0.91180 0.88008 0.93755 1.84019 1.46981 1.41992 1.37621 1.21710 1.08517 1.21628 0.96827 0.87636 1.26363 0.94566 0.97338 1.02803 1.70206 1.11545 1.32117 1.40036 0.84793 0.78278 0.78121 0.76048 1.18007 1.20808 1.18368 1.18072 0.84719 0.93734 0.87266 1.41179 1.11260 1.72915 1.10733 0.73485 0.82974 0.82114 0.83027 0.85544 0.92275 0.76256 0.74815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -20.19 18.54 19.00 0.35 -19.83 16 2 C 0.33 13.62 15.65 88.33 1.38 15.00 16 3 C -0.10 -3.90 6.96 39.84 0.28 -3.62 16 4 N -0.46 -17.58 11.30 -190.14 -2.15 -19.73 16 5 C 0.20 6.50 12.44 179.91 2.24 8.73 16 6 N -0.41 -14.53 2.62 -345.59 -0.91 -15.44 16 7 C 0.00 0.09 5.48 38.18 0.21 0.30 16 8 C -0.05 -1.13 9.90 22.37 0.22 -0.90 16 9 C -0.18 -3.60 10.04 22.29 0.22 -3.37 16 10 C -0.05 -1.17 10.04 22.27 0.22 -0.94 16 11 C -0.24 -7.83 9.16 22.38 0.21 -7.63 16 12 C 0.13 4.92 6.47 22.68 0.15 5.06 16 13 O -0.20 -10.05 9.19 -22.68 -0.21 -10.26 16 14 C -0.41 -20.64 9.49 67.92 0.64 -20.00 16 15 H 0.11 4.77 5.21 -2.91 -0.02 4.75 16 16 C -0.01 -0.55 5.49 84.83 0.47 -0.09 16 17 N -0.90 -51.56 13.67 21.61 0.30 -51.27 16 18 Si 1.01 39.52 29.55 68.60 2.03 41.55 16 19 H -0.26 -9.32 7.11 99.48 0.71 -8.61 16 20 H -0.28 -11.20 7.11 99.48 0.71 -10.50 16 21 H -0.26 -9.61 7.11 99.48 0.71 -8.91 16 22 C 0.39 14.84 7.63 131.87 1.01 15.84 16 23 N -0.82 -28.03 9.06 -53.73 -0.49 -28.52 16 24 H 0.25 5.62 8.06 -2.91 -0.02 5.59 16 25 H 0.15 2.81 8.06 -2.91 -0.02 2.78 16 26 H 0.16 2.04 8.06 -2.91 -0.02 2.02 16 27 H 0.15 2.52 8.06 -2.91 -0.02 2.50 16 28 H 0.13 4.35 5.64 -2.91 -0.02 4.34 16 29 H 0.27 14.56 8.31 -92.71 -0.77 13.79 16 30 H 0.41 13.73 8.46 -92.70 -0.78 12.95 16 31 H 0.42 13.20 8.69 -92.71 -0.81 12.39 16 Total: -1.00 -67.82 292.56 5.80 -62.02 By element: Atomic # 1 Polarization: 33.46 SS G_CDS: -0.37 Total: 33.10 kcal Atomic # 6 Polarization: 1.14 SS G_CDS: 7.24 Total: 8.39 kcal Atomic # 7 Polarization: -131.90 SS G_CDS: -2.89 Total: -134.79 kcal Atomic # 8 Polarization: -10.05 SS G_CDS: -0.21 Total: -10.26 kcal Atomic # 14 Polarization: 39.52 SS G_CDS: 2.03 Total: 41.55 kcal Total: -67.82 5.80 -62.02 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212597409.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.374 kcal (2) G-P(sol) polarization free energy of solvation -67.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.016 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds