Wall clock time and date at job start Mon Mar 30 2020 00:45:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 N 1.36038 * 126.34121 * 208.84126 * 3 2 1 5 5 C 1.29989 * 109.29831 * 179.97438 * 4 3 2 6 6 N 1.36582 * 109.45995 * 359.97438 * 5 4 3 7 7 C 1.40276 * 126.21434 * 179.97438 * 6 5 4 8 8 C 1.38877 * 119.99575 * 310.02651 * 7 6 5 9 9 C 1.38005 * 120.00367 * 180.02562 * 8 7 6 10 10 C 1.38912 * 119.99698 * 359.97438 * 9 8 7 11 11 O 1.35766 * 120.00551 * 180.02562 * 10 9 8 12 12 C 1.34822 * 116.99612 * 354.46058 * 11 10 9 13 13 H 1.07998 * 120.00270 * 5.05526 * 12 11 10 14 14 C 1.38639 * 119.99410 * 185.05610 * 12 11 10 15 15 N 1.31567 * 120.00658 * 0.02562 * 14 12 11 16 16 Si 1.86804 * 119.99687 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.46921 * 90.00385 * 16 14 12 18 18 H 1.48505 * 109.46913 * 209.99648 * 16 14 12 19 19 H 1.48497 * 109.47470 * 329.99975 * 16 14 12 20 20 C 1.38906 * 119.98728 * 0.02562 * 10 9 8 21 21 C 1.38006 * 119.99913 * 359.97438 * 20 10 9 22 22 C 1.36702 * 107.56631 * 0.22788 * 6 5 4 23 23 N 1.38247 * 126.82253 * 179.76897 * 22 6 5 24 24 H 1.07998 * 125.27236 * 179.97438 * 5 4 3 25 25 H 1.07998 * 119.99874 * 0.27544 * 8 7 6 26 26 H 1.07999 * 120.00362 * 180.02562 * 9 8 7 27 27 H 0.97001 * 120.00829 * 180.02562 * 15 14 12 28 28 H 1.08006 * 120.00021 * 179.97438 * 20 10 9 29 29 H 1.07995 * 119.99429 * 179.97438 * 21 20 10 30 30 H 0.97006 * 119.99858 * 0.02562 * 23 22 6 31 31 H 0.96997 * 120.00240 * 179.97438 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 7 3.3737 0.9609 0.5286 5 6 4.6166 0.6274 0.3453 6 7 4.6748 -0.5683 -0.3121 7 6 5.8408 -1.2515 -0.6883 8 6 6.8475 -0.5823 -1.3719 9 6 7.9945 -1.2544 -1.7425 10 6 8.1422 -2.6001 -1.4312 11 8 9.2708 -3.2613 -1.7953 12 6 10.1572 -2.5867 -2.5548 13 1 9.9930 -1.5429 -2.7780 14 6 11.2795 -3.2332 -3.0493 15 7 11.4793 -4.5050 -2.7779 16 14 12.5081 -2.2985 -4.1012 17 1 13.5467 -1.6933 -3.2292 18 1 13.1503 -3.2328 -5.0604 19 1 11.8043 -1.2265 -4.8500 20 6 7.1351 -3.2691 -0.7474 21 6 5.9883 -2.5967 -0.3770 22 6 3.3902 -0.9757 -0.5420 23 7 2.9903 -2.1323 -1.1851 24 1 5.4711 1.2063 0.6635 25 1 6.7346 0.4650 -1.6100 26 1 8.7776 -0.7339 -2.2738 27 1 12.2648 -4.9572 -3.1236 28 1 7.2496 -4.3155 -0.5056 29 1 5.2051 -3.1171 0.1543 30 1 3.6542 -2.7517 -1.5264 31 1 2.0459 -2.3247 -1.2943 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001212606040.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:41 Heat of formation + Delta-G solvation = 93.836294 kcal Electronic energy + Delta-G solvation = -18801.536090 eV Core-core repulsion = 15664.099550 eV Total energy + Delta-G solvation = -3137.436540 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.086 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.13854 -39.33654 -37.08389 -36.23490 -34.88741 -33.31955 -32.40240 -30.68496 -28.32358 -28.26444 -25.70993 -23.28235 -22.86584 -21.93086 -20.59598 -18.83324 -18.45615 -17.66843 -16.97210 -16.26829 -15.71369 -15.36136 -14.82153 -14.58978 -14.32665 -13.99348 -13.94533 -13.32580 -13.12306 -13.01135 -12.83310 -12.52729 -12.01863 -11.86231 -11.77553 -11.30931 -11.21174 -11.09672 -10.65180 -10.25008 -9.93124 -9.58336 -9.06575 -8.70782 -7.60547 -7.50776 -6.76064 -4.34317 1.43683 1.74289 1.95203 2.43779 2.57394 2.75945 2.95850 2.97266 3.02396 3.71251 3.72656 3.78114 4.02853 4.11954 4.76850 4.87283 4.95861 5.06832 5.18869 5.24913 5.63554 5.77847 5.81866 6.07425 6.18810 6.38040 6.55465 6.69864 6.84060 6.86972 7.03553 7.20022 7.35734 7.54718 7.66831 7.71628 7.95624 8.68158 9.30644 10.40070 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.045487 B = 0.003599 C = 0.003466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.408579 B = 7777.303796 C = 8075.440642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C 0.318 3.682 3 C -0.059 4.059 4 N -0.435 5.435 5 C 0.191 3.809 6 N -0.407 5.407 7 C -0.013 4.013 8 C -0.051 4.051 9 C -0.221 4.221 10 C 0.159 3.841 11 O -0.160 6.160 12 C -0.396 4.396 13 H 0.098 0.902 14 C 0.043 3.957 15 N -0.850 5.850 16 Si 0.945 3.055 17 H -0.270 1.270 18 H -0.275 1.275 19 H -0.265 1.265 20 C -0.176 4.176 21 C -0.069 4.069 22 C 0.360 3.640 23 N -0.839 5.839 24 H 0.215 0.785 25 H 0.120 0.880 26 H 0.138 0.862 27 H 0.275 0.725 28 H 0.128 0.872 29 H 0.119 0.881 30 H 0.408 0.592 31 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.451 3.955 1.414 7.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.126 5.126 2 C 0.004 3.996 3 C -0.189 4.189 4 N -0.152 5.152 5 C -0.093 4.093 6 N -0.093 5.093 7 C -0.103 4.103 8 C -0.070 4.070 9 C -0.241 4.241 10 C 0.102 3.898 11 O -0.061 6.061 12 C -0.471 4.471 13 H 0.115 0.885 14 C -0.163 4.163 15 N -0.483 5.483 16 Si 0.768 3.232 17 H -0.196 1.196 18 H -0.200 1.200 19 H -0.189 1.189 20 C -0.196 4.196 21 C -0.089 4.089 22 C 0.134 3.866 23 N -0.386 5.386 24 H 0.231 0.769 25 H 0.138 0.862 26 H 0.156 0.844 27 H 0.085 0.915 28 H 0.146 0.854 29 H 0.137 0.863 30 H 0.239 0.761 31 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -8.091 4.275 1.813 9.329 hybrid contribution 1.408 -0.530 -1.052 1.836 sum -6.683 3.745 0.761 7.698 Atomic orbital electron populations 1.81237 1.11237 1.08452 1.11693 1.23894 0.90391 0.93114 0.92246 1.15066 0.85765 0.97983 1.20108 1.70420 1.00101 1.25107 1.19620 1.24873 0.96280 0.86839 1.01259 1.42487 1.02842 1.19259 1.44719 1.17150 0.88228 0.92931 1.12007 1.20616 0.92422 0.99120 0.94885 1.21069 0.99611 0.94919 1.08492 1.19450 0.87110 0.90794 0.92403 1.83980 1.23761 1.39723 1.58684 1.21435 1.01354 0.95589 1.28755 0.88508 1.25389 0.97629 0.95976 0.97334 1.70026 1.27654 1.09219 1.41384 0.85648 0.79574 0.78864 0.79072 1.19552 1.20004 1.18906 1.20072 0.93018 1.00470 1.06065 1.20476 0.97483 0.92302 0.98637 1.17970 0.84467 0.89191 0.94993 1.41372 1.11151 1.21267 1.64851 0.76910 0.86220 0.84419 0.91474 0.85398 0.86326 0.76081 0.75163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -7.04 18.54 41.84 0.78 -6.26 16 2 C 0.32 4.66 15.65 -22.48 -0.35 4.31 16 3 C -0.06 -0.83 6.96 -83.92 -0.58 -1.42 16 4 N -0.44 -6.30 11.30 -11.45 -0.13 -6.43 16 5 C 0.19 2.38 12.25 -89.37 -1.09 1.29 16 6 N -0.41 -5.28 2.89 -60.69 -0.18 -5.45 16 7 C -0.01 -0.18 5.87 -83.52 -0.49 -0.67 16 8 C -0.05 -0.74 9.67 -39.43 -0.38 -1.12 16 9 C -0.22 -3.88 9.16 -39.42 -0.36 -4.24 16 10 C 0.16 3.18 6.65 -39.08 -0.26 2.92 16 11 O -0.16 -3.97 9.76 0.02 0.00 -3.97 16 12 C -0.40 -9.70 9.48 30.88 0.29 -9.41 16 13 H 0.10 2.14 5.20 -52.49 -0.27 1.87 16 14 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 15 N -0.85 -22.57 13.67 55.48 0.76 -21.81 16 16 Si 0.94 18.33 29.55 -169.99 -5.02 13.30 16 17 H -0.27 -5.14 7.11 56.52 0.40 -4.74 16 18 H -0.28 -5.28 7.11 56.52 0.40 -4.88 16 19 H -0.26 -4.92 7.11 56.52 0.40 -4.52 16 20 C -0.18 -2.98 9.99 -39.42 -0.39 -3.37 16 21 C -0.07 -0.98 8.57 -39.43 -0.34 -1.31 16 22 C 0.36 4.55 7.82 -152.11 -1.19 3.36 16 23 N -0.84 -8.15 8.99 31.66 0.28 -7.86 16 24 H 0.21 1.95 8.06 -52.49 -0.42 1.52 16 25 H 0.12 1.48 8.06 -52.49 -0.42 1.05 16 26 H 0.14 2.42 5.63 -52.49 -0.30 2.13 16 27 H 0.28 6.69 8.31 -40.82 -0.34 6.35 16 28 H 0.13 2.07 8.06 -52.48 -0.42 1.65 16 29 H 0.12 1.43 7.94 -52.49 -0.42 1.02 16 30 H 0.41 3.72 7.54 -40.82 -0.31 3.41 16 31 H 0.42 3.33 8.69 -40.82 -0.35 2.98 16 LS Contribution 291.08 15.07 4.39 4.39 Total: -1.00 -28.53 291.08 -6.42 -34.95 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: -2.05 Total: 7.84 kcal Atomic # 6 Polarization: -3.45 SS G_CDS: -5.25 Total: -8.70 kcal Atomic # 7 Polarization: -49.33 SS G_CDS: 1.51 Total: -47.82 kcal Atomic # 8 Polarization: -3.97 SS G_CDS: 0.00 Total: -3.97 kcal Atomic # 14 Polarization: 18.33 SS G_CDS: -5.02 Total: 13.30 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -28.53 -6.42 -34.95 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212606040.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.787 kcal (2) G-P(sol) polarization free energy of solvation -28.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.951 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds