Wall clock time and date at job start Mon Mar 30 2020 00:45:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 N 1.36038 * 126.34121 * 208.84126 * 3 2 1 5 5 C 1.29989 * 109.29831 * 179.97438 * 4 3 2 6 6 N 1.36582 * 109.45995 * 359.97438 * 5 4 3 7 7 C 1.40276 * 126.21434 * 179.97438 * 6 5 4 8 8 C 1.38877 * 119.99575 * 310.02651 * 7 6 5 9 9 C 1.38005 * 120.00367 * 180.02562 * 8 7 6 10 10 C 1.38912 * 119.99698 * 359.97438 * 9 8 7 11 11 O 1.35766 * 120.00551 * 180.02562 * 10 9 8 12 12 C 1.34822 * 116.99612 * 354.46058 * 11 10 9 13 13 H 1.07998 * 120.00270 * 5.05526 * 12 11 10 14 14 C 1.38639 * 119.99410 * 185.05610 * 12 11 10 15 15 N 1.31567 * 120.00658 * 0.02562 * 14 12 11 16 16 Si 1.86804 * 119.99687 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.46921 * 90.00385 * 16 14 12 18 18 H 1.48505 * 109.46913 * 209.99648 * 16 14 12 19 19 H 1.48497 * 109.47470 * 329.99975 * 16 14 12 20 20 C 1.38906 * 119.98728 * 0.02562 * 10 9 8 21 21 C 1.38006 * 119.99913 * 359.97438 * 20 10 9 22 22 C 1.36702 * 107.56631 * 0.22788 * 6 5 4 23 23 N 1.38247 * 126.82253 * 179.76897 * 22 6 5 24 24 H 1.07998 * 125.27236 * 179.97438 * 5 4 3 25 25 H 1.07998 * 119.99874 * 0.27544 * 8 7 6 26 26 H 1.07999 * 120.00362 * 180.02562 * 9 8 7 27 27 H 0.97001 * 120.00829 * 180.02562 * 15 14 12 28 28 H 1.08006 * 120.00021 * 179.97438 * 20 10 9 29 29 H 1.07995 * 119.99429 * 179.97438 * 21 20 10 30 30 H 0.97006 * 119.99858 * 0.02562 * 23 22 6 31 31 H 0.96997 * 120.00240 * 179.97438 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 7 3.3737 0.9609 0.5286 5 6 4.6166 0.6274 0.3453 6 7 4.6748 -0.5683 -0.3121 7 6 5.8408 -1.2515 -0.6883 8 6 6.8475 -0.5823 -1.3719 9 6 7.9945 -1.2544 -1.7425 10 6 8.1422 -2.6001 -1.4312 11 8 9.2708 -3.2613 -1.7953 12 6 10.1572 -2.5867 -2.5548 13 1 9.9930 -1.5429 -2.7780 14 6 11.2795 -3.2332 -3.0493 15 7 11.4793 -4.5050 -2.7779 16 14 12.5081 -2.2985 -4.1012 17 1 13.5467 -1.6933 -3.2292 18 1 13.1503 -3.2328 -5.0604 19 1 11.8043 -1.2265 -4.8500 20 6 7.1351 -3.2691 -0.7474 21 6 5.9883 -2.5967 -0.3770 22 6 3.3902 -0.9757 -0.5420 23 7 2.9903 -2.1323 -1.1851 24 1 5.4711 1.2063 0.6635 25 1 6.7346 0.4650 -1.6100 26 1 8.7776 -0.7339 -2.2738 27 1 12.2648 -4.9572 -3.1236 28 1 7.2496 -4.3155 -0.5056 29 1 5.2051 -3.1171 0.1543 30 1 3.6542 -2.7517 -1.5264 31 1 2.0459 -2.3247 -1.2943 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001212606040.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:41 Heat of formation + Delta-G solvation = 77.575729 kcal Electronic energy + Delta-G solvation = -18802.241201 eV Core-core repulsion = 15664.099550 eV Total energy + Delta-G solvation = -3138.141651 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.086 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.21327 -40.78614 -38.49333 -37.41701 -35.85810 -34.66752 -33.95171 -32.00584 -29.60982 -29.32628 -27.37964 -24.48283 -24.10851 -23.18627 -21.72969 -20.02990 -19.90496 -19.00042 -18.28098 -17.25857 -16.90541 -16.50249 -16.22860 -15.97402 -15.60128 -15.45531 -15.13058 -14.73355 -14.38321 -14.22033 -14.05028 -13.70710 -13.56002 -13.22297 -13.15343 -12.67568 -12.52167 -12.24647 -12.11818 -11.38329 -11.33819 -10.96195 -10.63081 -9.99029 -8.98398 -8.54902 -8.49342 -6.16672 0.20097 0.42644 0.80398 1.35174 1.40415 1.45779 1.53882 1.56260 1.63231 2.17262 2.67193 2.67487 2.77023 3.00951 3.09795 3.41232 3.91317 3.96539 3.98012 4.13566 4.37050 4.49643 4.66696 4.83382 4.97915 5.09313 5.15426 5.31471 5.48942 5.59489 5.78574 5.97061 5.98222 6.45566 6.48518 6.64683 6.94986 6.95975 7.70573 8.72358 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.045487 B = 0.003599 C = 0.003466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.408579 B = 7777.303796 C = 8075.440642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.473 5.473 2 C 0.328 3.672 3 C -0.080 4.080 4 N -0.459 5.459 5 C 0.204 3.796 6 N -0.416 5.416 7 C 0.022 3.978 8 C -0.043 4.043 9 C -0.222 4.222 10 C 0.129 3.871 11 O -0.219 6.219 12 C -0.412 4.412 13 H 0.111 0.889 14 C -0.017 4.017 15 N -0.915 5.915 16 Si 1.014 2.986 17 H -0.265 1.265 18 H -0.276 1.276 19 H -0.250 1.250 20 C -0.179 4.179 21 C -0.056 4.056 22 C 0.373 3.627 23 N -0.824 5.824 24 H 0.247 0.753 25 H 0.152 0.848 26 H 0.134 0.866 27 H 0.274 0.726 28 H 0.129 0.871 29 H 0.148 0.852 30 H 0.414 0.586 31 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.915 5.886 1.639 9.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.153 5.153 2 C 0.015 3.985 3 C -0.209 4.209 4 N -0.176 5.176 5 C -0.080 4.080 6 N -0.104 5.104 7 C -0.068 4.068 8 C -0.063 4.063 9 C -0.242 4.242 10 C 0.077 3.923 11 O -0.124 6.124 12 C -0.488 4.488 13 H 0.128 0.872 14 C -0.216 4.216 15 N -0.552 5.552 16 Si 0.834 3.166 17 H -0.189 1.189 18 H -0.201 1.201 19 H -0.173 1.173 20 C -0.199 4.199 21 C -0.076 4.076 22 C 0.145 3.855 23 N -0.373 5.373 24 H 0.263 0.737 25 H 0.170 0.830 26 H 0.152 0.848 27 H 0.083 0.917 28 H 0.147 0.853 29 H 0.165 0.835 30 H 0.246 0.754 31 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges -9.659 6.233 2.052 11.677 hybrid contribution 1.423 -0.974 -0.931 1.960 sum -8.236 5.259 1.121 9.836 Atomic orbital electron populations 1.81250 1.11949 1.09308 1.12790 1.23996 0.90505 0.92430 0.91555 1.15057 0.85475 0.98857 1.21521 1.70417 1.00947 1.25675 1.20530 1.25586 0.96633 0.86122 0.99617 1.42507 1.02382 1.19738 1.45753 1.17212 0.87966 0.92650 1.09011 1.20855 0.91096 1.00546 0.93762 1.21155 1.00633 0.94082 1.08311 1.20008 0.87028 0.92081 0.93188 1.83964 1.25782 1.41229 1.61393 1.21875 1.01732 0.96262 1.28910 0.87205 1.26529 0.99586 0.96807 0.98709 1.70163 1.28969 1.11331 1.44700 0.84633 0.77043 0.77658 0.77286 1.18949 1.20147 1.17292 1.20258 0.93202 1.00860 1.05549 1.20689 0.96872 0.92452 0.97580 1.17997 0.84045 0.89335 0.94097 1.41449 1.12070 1.20210 1.63526 0.73709 0.82994 0.84819 0.91730 0.85345 0.83481 0.75380 0.74011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -14.20 18.54 19.00 0.35 -13.85 16 2 C 0.33 8.97 15.65 88.33 1.38 10.36 16 3 C -0.08 -2.02 6.96 39.84 0.28 -1.74 16 4 N -0.46 -11.71 11.30 -190.14 -2.15 -13.86 16 5 C 0.20 4.16 12.25 179.91 2.20 6.36 16 6 N -0.42 -8.87 2.89 -345.91 -1.00 -9.87 16 7 C 0.02 0.52 5.87 38.09 0.22 0.75 16 8 C -0.04 -1.09 9.67 22.37 0.22 -0.88 16 9 C -0.22 -7.45 9.16 22.38 0.20 -7.24 16 10 C 0.13 5.17 6.65 22.59 0.15 5.32 16 11 O -0.22 -11.31 9.76 -22.83 -0.22 -11.53 16 12 C -0.41 -20.95 9.48 67.92 0.64 -20.30 16 13 H 0.11 4.96 5.20 -2.91 -0.02 4.94 16 14 C -0.02 -0.89 5.49 84.83 0.47 -0.43 16 15 N -0.91 -51.48 13.67 21.61 0.30 -51.18 16 16 Si 1.01 38.48 29.55 68.60 2.03 40.50 16 17 H -0.26 -9.62 7.11 99.48 0.71 -8.91 16 18 H -0.28 -10.35 7.11 99.48 0.71 -9.64 16 19 H -0.25 -8.64 7.11 99.48 0.71 -7.94 16 20 C -0.18 -5.83 9.99 22.37 0.22 -5.60 16 21 C -0.06 -1.39 8.57 22.37 0.19 -1.20 16 22 C 0.37 7.95 7.82 131.87 1.03 8.99 16 23 N -0.82 -12.89 8.99 -53.73 -0.48 -13.37 16 24 H 0.25 3.13 8.06 -2.91 -0.02 3.11 16 25 H 0.15 2.94 8.06 -2.91 -0.02 2.92 16 26 H 0.13 4.58 5.63 -2.91 -0.02 4.57 16 27 H 0.27 14.19 8.31 -92.71 -0.77 13.42 16 28 H 0.13 4.13 8.06 -2.91 -0.02 4.11 16 29 H 0.15 2.87 7.94 -2.91 -0.02 2.84 16 30 H 0.41 5.85 7.54 -92.70 -0.70 5.15 16 31 H 0.43 5.38 8.69 -92.71 -0.81 4.58 16 Total: -1.00 -65.39 291.08 5.76 -59.63 By element: Atomic # 1 Polarization: 19.43 SS G_CDS: -0.28 Total: 19.15 kcal Atomic # 6 Polarization: -12.84 SS G_CDS: 7.22 Total: -5.63 kcal Atomic # 7 Polarization: -99.14 SS G_CDS: -2.98 Total: -102.12 kcal Atomic # 8 Polarization: -11.31 SS G_CDS: -0.22 Total: -11.53 kcal Atomic # 14 Polarization: 38.48 SS G_CDS: 2.03 Total: 40.50 kcal Total: -65.39 5.76 -59.63 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212606040.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.204 kcal (2) G-P(sol) polarization free energy of solvation -65.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.628 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds