Wall clock time and date at job start Mon Mar 30 2020 00:45:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.43207 * 179.97438 * 2 1 4 4 N 1.32027 * 126.44549 * 173.45653 * 3 2 1 5 5 N 1.28452 * 110.25707 * 180.02562 * 4 3 2 6 6 C 1.40068 * 124.91645 * 179.97438 * 5 4 3 7 7 C 1.38946 * 119.99673 * 179.75027 * 6 5 4 8 8 C 1.37974 * 119.99635 * 179.74456 * 7 6 5 9 9 C 1.38928 * 120.00125 * 0.55280 * 8 7 6 10 10 O 1.35744 * 119.99983 * 179.72248 * 9 8 7 11 11 C 1.34817 * 116.99982 * 174.43657 * 10 9 8 12 12 H 1.08001 * 119.99960 * 5.05673 * 11 10 9 13 13 C 1.38644 * 120.00116 * 185.05274 * 11 10 9 14 14 N 1.31565 * 119.99906 * 0.02562 * 13 11 10 15 15 Si 1.86794 * 120.00254 * 179.97438 * 13 11 10 16 16 H 1.48490 * 109.47214 * 60.00262 * 15 13 11 17 17 H 1.48501 * 109.47366 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.47194 * 300.00195 * 15 13 11 19 19 C 1.38933 * 120.00099 * 359.69967 * 9 8 7 20 20 C 1.37970 * 120.00171 * 0.02562 * 19 9 8 21 21 C 1.36171 * 110.16167 * 359.97438 * 5 4 3 22 22 C 1.35916 * 107.03959 * 0.02562 * 21 5 4 23 23 N 1.40306 * 127.28005 * 179.97438 * 22 21 5 24 24 H 1.08001 * 120.00109 * 0.02562 * 7 6 5 25 25 H 1.08003 * 119.99758 * 180.27410 * 8 7 6 26 26 H 0.97003 * 120.00104 * 179.97438 * 14 13 11 27 27 H 1.08002 * 119.99906 * 179.97438 * 19 9 8 28 28 H 1.08002 * 120.00261 * 180.02562 * 20 19 9 29 29 H 1.08003 * 126.48150 * 180.02562 * 21 5 4 30 30 H 0.97004 * 119.99988 * 179.97438 * 23 22 21 31 31 H 0.97000 * 119.99619 * 359.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 7 3.3519 1.0561 -0.1210 5 7 4.5856 0.7008 -0.0808 6 6 5.6754 1.5750 -0.1816 7 6 6.9718 1.0790 -0.1200 8 6 8.0453 1.9395 -0.2246 9 6 7.8299 3.3031 -0.3802 10 8 8.8861 4.1503 -0.4775 11 6 8.6111 5.4433 -0.7421 12 1 7.5857 5.7794 -0.7856 13 6 9.6448 6.3416 -0.9585 14 7 10.8940 5.9321 -0.9061 15 14 9.2639 8.1330 -1.3259 16 1 8.5091 8.7215 -0.1906 17 1 10.5331 8.8799 -1.5172 18 1 8.4467 8.2218 -2.5627 19 6 6.5336 3.7997 -0.4366 20 6 5.4601 2.9387 -0.3376 21 6 4.6806 -0.6487 0.0742 22 6 3.4120 -1.1334 0.1299 23 7 3.0196 -2.4718 0.2831 24 1 7.1392 0.0194 0.0054 25 1 9.0530 1.5534 -0.1811 26 1 11.6172 6.5605 -1.0578 27 1 6.3662 4.8598 -0.5571 28 1 4.4523 3.3246 -0.3819 29 1 5.5916 -1.2249 0.1404 30 1 2.0774 -2.7009 0.3098 31 1 3.6905 -3.1678 0.3622 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001212606329.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:36 Heat of formation + Delta-G solvation = 119.616784 kcal Electronic energy + Delta-G solvation = -18577.492950 eV Core-core repulsion = 15441.174335 eV Total energy + Delta-G solvation = -3136.318614 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.086 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.70166 -39.26813 -37.11253 -36.37861 -34.87976 -32.73854 -32.01620 -30.76680 -29.14565 -28.10535 -25.66508 -24.05448 -22.64149 -21.15691 -20.77592 -18.89057 -18.23669 -17.52904 -16.87924 -16.29117 -16.02806 -15.46279 -14.71183 -14.56499 -14.16175 -13.93341 -13.62148 -13.41663 -13.19300 -13.08281 -12.84836 -12.41093 -11.96824 -11.93685 -11.76157 -11.29576 -11.06744 -10.96564 -10.74683 -10.59960 -9.61647 -9.48045 -8.94640 -8.58139 -7.91318 -7.10985 -6.68855 -4.25233 1.15570 1.88368 1.99101 2.35116 2.58050 2.76981 3.02844 3.04307 3.06653 3.57204 3.58112 3.79123 4.16833 4.28265 4.71357 4.85567 4.96454 5.08524 5.29162 5.42131 5.48565 5.81636 5.89114 6.05498 6.13493 6.49288 6.59643 6.72643 6.95374 7.02614 7.17781 7.28233 7.44216 7.47513 7.64069 7.74810 8.07074 8.75532 9.38974 10.47335 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.037685 B = 0.003567 C = 0.003264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.825970 B = 7848.216972 C = 8576.450053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C 0.313 3.687 3 C 0.017 3.983 4 N -0.229 5.229 5 N -0.169 5.169 6 C 0.007 3.993 7 C -0.064 4.064 8 C -0.174 4.174 9 C 0.157 3.843 10 O -0.160 6.160 11 C -0.394 4.394 12 H 0.097 0.903 13 C 0.043 3.957 14 N -0.852 5.852 15 Si 0.944 3.056 16 H -0.267 1.267 17 H -0.276 1.276 18 H -0.267 1.267 19 C -0.221 4.221 20 C -0.045 4.045 21 C -0.099 4.099 22 C 0.142 3.858 23 N -0.862 5.862 24 H 0.125 0.875 25 H 0.131 0.869 26 H 0.275 0.725 27 H 0.139 0.861 28 H 0.128 0.872 29 H 0.182 0.818 30 H 0.400 0.600 31 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.194 -11.350 1.502 13.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.102 5.102 2 C -0.003 4.003 3 C -0.140 4.140 4 N -0.069 5.069 5 N 0.048 4.952 6 C -0.084 4.084 7 C -0.085 4.085 8 C -0.194 4.194 9 C 0.100 3.900 10 O -0.061 6.061 11 C -0.470 4.470 12 H 0.115 0.885 13 C -0.163 4.163 14 N -0.484 5.484 15 Si 0.768 3.232 16 H -0.192 1.192 17 H -0.201 1.201 18 H -0.192 1.192 19 C -0.241 4.241 20 C -0.065 4.065 21 C -0.244 4.244 22 C 0.030 3.970 23 N -0.407 5.407 24 H 0.143 0.857 25 H 0.149 0.851 26 H 0.085 0.915 27 H 0.156 0.844 28 H 0.146 0.854 29 H 0.199 0.801 30 H 0.228 0.772 31 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -8.330 -9.989 1.349 13.076 hybrid contribution 0.194 -0.325 -0.035 0.380 sum -8.137 -10.314 1.314 13.203 Atomic orbital electron populations 1.81252 1.11025 1.06948 1.10947 1.23762 0.90223 0.93683 0.92658 1.16399 0.86432 0.90331 1.20856 1.73562 0.89670 1.24938 1.18724 1.42059 1.02983 1.05102 1.45094 1.17139 0.83207 0.88873 1.19184 1.20279 0.89334 0.99213 0.99668 1.20013 0.98751 0.90383 1.10270 1.19474 0.87673 0.90456 0.92354 1.83963 1.28795 1.19140 1.74231 1.21411 0.94879 0.80882 1.49813 0.88537 1.25377 0.94379 1.00571 0.96011 1.70022 0.98727 1.36275 1.43397 0.85716 0.78332 0.79619 0.79520 1.19202 1.20081 1.19195 1.21070 0.91399 1.00819 1.10836 1.20544 0.99485 0.90229 0.96236 1.21921 0.98248 0.84584 1.19629 1.17385 0.90972 0.85829 1.02837 1.41383 1.09838 1.02683 1.86828 0.85703 0.85126 0.91496 0.84354 0.85402 0.80068 0.77196 0.76905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -6.40 18.54 41.84 0.78 -5.62 16 2 C 0.31 4.45 15.85 -22.47 -0.36 4.09 16 3 C 0.02 0.24 7.01 -84.43 -0.59 -0.35 16 4 N -0.23 -3.63 11.15 32.54 0.36 -3.27 16 5 N -0.17 -2.53 3.52 -10.32 -0.04 -2.56 16 6 C 0.01 0.11 6.66 -83.57 -0.56 -0.45 16 7 C -0.06 -0.97 9.42 -39.42 -0.37 -1.34 16 8 C -0.17 -3.11 9.98 -39.42 -0.39 -3.50 16 9 C 0.16 3.34 6.65 -39.07 -0.26 3.08 16 10 O -0.16 -4.12 9.75 0.11 0.00 -4.12 16 11 C -0.39 -10.05 9.48 30.88 0.29 -9.76 16 12 H 0.10 2.24 5.20 -52.49 -0.27 1.97 16 13 C 0.04 1.09 5.49 -17.52 -0.10 1.00 16 14 N -0.85 -23.14 13.67 55.48 0.76 -22.38 16 15 Si 0.94 18.99 29.55 -169.99 -5.02 13.97 16 16 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 17 H -0.28 -5.45 7.11 56.52 0.40 -5.05 16 18 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 19 C -0.22 -4.30 9.16 -39.42 -0.36 -4.66 16 20 C -0.05 -0.78 9.58 -39.42 -0.38 -1.16 16 21 C -0.10 -1.18 10.81 -16.46 -0.18 -1.36 16 22 C 0.14 1.65 7.41 -83.38 -0.62 1.03 16 23 N -0.86 -6.83 9.17 32.59 0.30 -6.53 16 24 H 0.13 1.42 6.64 -52.49 -0.35 1.07 16 25 H 0.13 2.17 8.06 -52.48 -0.42 1.75 16 26 H 0.28 6.86 8.31 -40.82 -0.34 6.52 16 27 H 0.14 2.67 5.63 -52.49 -0.30 2.37 16 28 H 0.13 2.09 7.64 -52.49 -0.40 1.69 16 29 H 0.18 1.57 6.96 -52.48 -0.37 1.21 16 30 H 0.40 2.86 8.88 -40.82 -0.36 2.49 16 31 H 0.40 2.17 8.96 -40.82 -0.37 1.80 16 LS Contribution 290.48 15.07 4.38 4.38 Total: -1.00 -29.02 290.48 -4.32 -33.35 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: -1.97 Total: 6.18 kcal Atomic # 6 Polarization: -9.52 SS G_CDS: -3.87 Total: -13.39 kcal Atomic # 7 Polarization: -42.52 SS G_CDS: 2.16 Total: -40.36 kcal Atomic # 8 Polarization: -4.12 SS G_CDS: 0.00 Total: -4.12 kcal Atomic # 14 Polarization: 18.99 SS G_CDS: -5.02 Total: 13.97 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -29.02 -4.32 -33.35 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212606329.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.963 kcal (2) G-P(sol) polarization free energy of solvation -29.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.346 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds