Wall clock time and date at job start Mon Mar 30 2020 00:45:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.43207 * 179.97438 * 2 1 4 4 N 1.32027 * 126.44549 * 173.45653 * 3 2 1 5 5 N 1.28452 * 110.25707 * 180.02562 * 4 3 2 6 6 C 1.40068 * 124.91645 * 179.97438 * 5 4 3 7 7 C 1.38946 * 119.99673 * 179.75027 * 6 5 4 8 8 C 1.37974 * 119.99635 * 179.74456 * 7 6 5 9 9 C 1.38928 * 120.00125 * 0.55280 * 8 7 6 10 10 O 1.35744 * 119.99983 * 179.72248 * 9 8 7 11 11 C 1.34817 * 116.99982 * 174.43657 * 10 9 8 12 12 H 1.08001 * 119.99960 * 5.05673 * 11 10 9 13 13 C 1.38644 * 120.00116 * 185.05274 * 11 10 9 14 14 N 1.31565 * 119.99906 * 0.02562 * 13 11 10 15 15 Si 1.86794 * 120.00254 * 179.97438 * 13 11 10 16 16 H 1.48490 * 109.47214 * 60.00262 * 15 13 11 17 17 H 1.48501 * 109.47366 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.47194 * 300.00195 * 15 13 11 19 19 C 1.38933 * 120.00099 * 359.69967 * 9 8 7 20 20 C 1.37970 * 120.00171 * 0.02562 * 19 9 8 21 21 C 1.36171 * 110.16167 * 359.97438 * 5 4 3 22 22 C 1.35916 * 107.03959 * 0.02562 * 21 5 4 23 23 N 1.40306 * 127.28005 * 179.97438 * 22 21 5 24 24 H 1.08001 * 120.00109 * 0.02562 * 7 6 5 25 25 H 1.08003 * 119.99758 * 180.27410 * 8 7 6 26 26 H 0.97003 * 120.00104 * 179.97438 * 14 13 11 27 27 H 1.08002 * 119.99906 * 179.97438 * 19 9 8 28 28 H 1.08002 * 120.00261 * 180.02562 * 20 19 9 29 29 H 1.08003 * 126.48150 * 180.02562 * 21 5 4 30 30 H 0.97004 * 119.99988 * 179.97438 * 23 22 21 31 31 H 0.97000 * 119.99619 * 359.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 7 3.3519 1.0561 -0.1210 5 7 4.5856 0.7008 -0.0808 6 6 5.6754 1.5750 -0.1816 7 6 6.9718 1.0790 -0.1200 8 6 8.0453 1.9395 -0.2246 9 6 7.8299 3.3031 -0.3802 10 8 8.8861 4.1503 -0.4775 11 6 8.6111 5.4433 -0.7421 12 1 7.5857 5.7794 -0.7856 13 6 9.6448 6.3416 -0.9585 14 7 10.8940 5.9321 -0.9061 15 14 9.2639 8.1330 -1.3259 16 1 8.5091 8.7215 -0.1906 17 1 10.5331 8.8799 -1.5172 18 1 8.4467 8.2218 -2.5627 19 6 6.5336 3.7997 -0.4366 20 6 5.4601 2.9387 -0.3376 21 6 4.6806 -0.6487 0.0742 22 6 3.4120 -1.1334 0.1299 23 7 3.0196 -2.4718 0.2831 24 1 7.1392 0.0194 0.0054 25 1 9.0530 1.5534 -0.1811 26 1 11.6172 6.5605 -1.0578 27 1 6.3662 4.8598 -0.5571 28 1 4.4523 3.3246 -0.3819 29 1 5.5916 -1.2249 0.1404 30 1 2.0774 -2.7009 0.3098 31 1 3.6905 -3.1678 0.3622 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001212606329.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:36 Heat of formation + Delta-G solvation = 100.358293 kcal Electronic energy + Delta-G solvation = -18578.328061 eV Core-core repulsion = 15441.174335 eV Total energy + Delta-G solvation = -3137.153725 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.086 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.80430 -40.80788 -38.54954 -37.61166 -35.81345 -34.39327 -33.35805 -32.14747 -30.22893 -29.38891 -27.39239 -25.34519 -23.98774 -22.40614 -22.00983 -20.04912 -19.77354 -18.90660 -18.34176 -17.15761 -17.04960 -16.63424 -16.24531 -16.01358 -15.59267 -15.47041 -14.84445 -14.63395 -14.61507 -14.38866 -14.13539 -13.58444 -13.47387 -13.28743 -13.24055 -12.69916 -12.49604 -12.15852 -12.13104 -11.91890 -11.24931 -10.92686 -10.47305 -9.97832 -9.06508 -8.49602 -8.30060 -6.15596 -0.10708 0.45010 0.82695 1.19377 1.38905 1.41415 1.52746 1.53592 1.63879 2.17456 2.45515 2.63057 2.77923 3.11471 3.24113 3.42016 3.67969 3.93805 4.01847 4.18308 4.40055 4.50346 4.62892 4.71945 4.95629 5.07401 5.12033 5.31395 5.38278 5.58669 5.73012 5.98141 6.15928 6.32714 6.52721 6.88183 6.95341 7.12404 7.69665 8.71902 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.037685 B = 0.003567 C = 0.003264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.825970 B = 7848.216972 C = 8576.450053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.440 5.440 2 C 0.323 3.677 3 C 0.013 3.987 4 N -0.263 5.263 5 N -0.187 5.187 6 C 0.034 3.966 7 C -0.047 4.047 8 C -0.173 4.173 9 C 0.126 3.874 10 O -0.215 6.215 11 C -0.416 4.416 12 H 0.105 0.895 13 C -0.015 4.015 14 N -0.912 5.912 15 Si 1.013 2.987 16 H -0.258 1.258 17 H -0.273 1.273 18 H -0.258 1.258 19 C -0.225 4.225 20 C -0.055 4.055 21 C -0.091 4.091 22 C 0.153 3.847 23 N -0.846 5.846 24 H 0.177 0.823 25 H 0.142 0.858 26 H 0.275 0.725 27 H 0.130 0.870 28 H 0.136 0.864 29 H 0.222 0.778 30 H 0.406 0.594 31 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.960 -14.131 1.791 16.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.120 5.120 2 C 0.008 3.992 3 C -0.145 4.145 4 N -0.102 5.102 5 N 0.029 4.971 6 C -0.056 4.056 7 C -0.067 4.067 8 C -0.193 4.193 9 C 0.073 3.927 10 O -0.119 6.119 11 C -0.492 4.492 12 H 0.123 0.877 13 C -0.214 4.214 14 N -0.549 5.549 15 Si 0.833 3.167 16 H -0.182 1.182 17 H -0.197 1.197 18 H -0.183 1.183 19 C -0.245 4.245 20 C -0.075 4.075 21 C -0.236 4.236 22 C 0.039 3.961 23 N -0.393 5.393 24 H 0.194 0.806 25 H 0.160 0.840 26 H 0.084 0.916 27 H 0.148 0.852 28 H 0.154 0.846 29 H 0.238 0.762 30 H 0.235 0.765 31 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -10.168 -12.847 1.650 16.467 hybrid contribution 0.315 0.048 -0.053 0.323 sum -9.853 -12.799 1.596 16.231 Atomic orbital electron populations 1.81269 1.11585 1.07603 1.11562 1.23799 0.90231 0.93090 0.92129 1.16580 0.86238 0.91164 1.20507 1.73514 0.90313 1.26235 1.20093 1.41968 1.02324 1.06061 1.46707 1.17308 0.84377 0.88680 1.15278 1.20696 0.87617 1.01239 0.97194 1.20337 1.00433 0.89283 1.09238 1.20043 0.87700 0.91639 0.93309 1.83945 1.30523 1.19535 1.77944 1.21811 0.95480 0.81602 1.50268 0.87738 1.26497 0.94078 1.04967 0.95855 1.70149 0.99792 1.37778 1.47138 0.84709 0.78252 0.74063 0.79688 1.18230 1.19723 1.18275 1.21089 0.91540 1.00971 1.10863 1.20634 0.99201 0.91025 0.96625 1.22587 0.99796 0.83189 1.18049 1.17458 0.90351 0.86643 1.01617 1.41420 1.10840 1.01545 1.85464 0.80583 0.84041 0.91618 0.85192 0.84596 0.76170 0.76507 0.75002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -12.57 18.54 19.01 0.35 -12.22 16 2 C 0.32 8.48 15.85 88.33 1.40 9.88 16 3 C 0.01 0.34 7.01 41.28 0.29 0.62 16 4 N -0.26 -7.64 11.15 -50.97 -0.57 -8.21 16 5 N -0.19 -4.90 3.52 -186.57 -0.66 -5.55 16 6 C 0.03 1.01 6.66 38.16 0.25 1.26 16 7 C -0.05 -1.24 9.42 22.38 0.21 -1.03 16 8 C -0.17 -5.94 9.98 22.37 0.22 -5.72 16 9 C 0.13 5.46 6.65 22.60 0.15 5.61 16 10 O -0.21 -11.65 9.75 -22.54 -0.22 -11.87 16 11 C -0.42 -22.39 9.48 67.92 0.64 -21.75 16 12 H 0.11 5.14 5.20 -2.91 -0.02 5.12 16 13 C -0.01 -0.79 5.49 84.83 0.47 -0.32 16 14 N -0.91 -52.54 13.67 21.61 0.30 -52.25 16 15 Si 1.01 40.42 29.55 68.60 2.03 42.44 16 16 H -0.26 -9.72 7.11 99.48 0.71 -9.01 16 17 H -0.27 -10.53 7.11 99.48 0.71 -9.82 16 18 H -0.26 -9.75 7.11 99.48 0.71 -9.05 16 19 C -0.22 -8.89 9.16 22.37 0.20 -8.69 16 20 C -0.05 -1.86 9.58 22.37 0.21 -1.64 16 21 C -0.09 -1.69 10.81 83.48 0.90 -0.79 16 22 C 0.15 2.86 7.41 38.17 0.28 3.15 16 23 N -0.85 -9.41 9.17 -50.82 -0.47 -9.88 16 24 H 0.18 2.83 6.64 -2.91 -0.02 2.81 16 25 H 0.14 4.52 8.06 -2.91 -0.02 4.50 16 26 H 0.27 14.57 8.31 -92.71 -0.77 13.80 16 27 H 0.13 5.25 5.63 -2.91 -0.02 5.24 16 28 H 0.14 4.33 7.64 -2.91 -0.02 4.31 16 29 H 0.22 2.19 6.96 -2.91 -0.02 2.17 16 30 H 0.41 4.11 8.88 -92.71 -0.82 3.29 16 31 H 0.42 2.29 8.96 -92.71 -0.83 1.46 16 Total: -1.00 -67.73 290.48 5.59 -62.14 By element: Atomic # 1 Polarization: 15.23 SS G_CDS: -0.42 Total: 14.81 kcal Atomic # 6 Polarization: -24.65 SS G_CDS: 5.24 Total: -19.41 kcal Atomic # 7 Polarization: -87.06 SS G_CDS: -1.04 Total: -88.11 kcal Atomic # 8 Polarization: -11.65 SS G_CDS: -0.22 Total: -11.87 kcal Atomic # 14 Polarization: 40.42 SS G_CDS: 2.03 Total: 42.44 kcal Total: -67.73 5.59 -62.14 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212606329.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.497 kcal (2) G-P(sol) polarization free energy of solvation -67.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.138 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds