Wall clock time and date at job start Mon Mar 30 2020 01:32:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48506 * 109.47116 * 239.99922 * 3 2 1 5 5 H 1.48490 * 109.47381 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46756 * 120.00523 * 3 2 1 7 7 C 1.37876 * 119.99563 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99652 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47291 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.46886 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47060 * 180.02562 * 11 10 9 13 13 O 1.42895 * 109.47503 * 180.02562 * 12 11 10 14 14 C 1.42902 * 114.00370 * 179.97438 * 13 12 11 15 15 H 1.08998 * 112.84492 * 18.80665 * 14 13 12 16 16 C 1.53773 * 113.61373 * 247.49445 * 14 13 12 17 17 C 1.53781 * 87.08221 * 220.01516 * 16 14 13 18 18 F 1.39899 * 113.61917 * 270.88812 * 17 16 14 19 19 F 1.39904 * 113.68900 * 139.99096 * 17 16 14 20 20 C 1.53778 * 113.61398 * 149.99717 * 14 13 12 21 21 F 1.39900 * 113.61670 * 254.52871 * 20 14 13 22 22 F 1.39900 * 113.61826 * 25.34813 * 20 14 13 23 23 H 0.97000 * 119.99425 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.46613 * 59.99978 * 9 7 2 25 25 H 1.09002 * 109.47120 * 300.00329 * 9 7 2 26 26 H 1.09001 * 109.46652 * 60.00253 * 10 9 7 27 27 H 1.08992 * 109.47514 * 300.00342 * 10 9 7 28 28 H 1.09002 * 109.47398 * 300.00496 * 11 10 9 29 29 H 1.09001 * 109.47194 * 60.00677 * 11 10 9 30 30 H 1.09002 * 109.47153 * 300.00319 * 12 11 10 31 31 H 1.08998 * 109.47533 * 59.99948 * 12 11 10 32 32 H 1.08997 * 113.62024 * 334.56753 * 16 14 13 33 33 H 1.09001 * 113.61259 * 105.47439 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 6 1.4801 -4.9871 -0.0012 12 6 2.4743 -6.1501 -0.0018 13 8 1.7598 -7.3876 -0.0018 14 6 2.5997 -8.5437 -0.0030 15 1 3.6179 -8.3274 0.3201 16 6 2.5244 -9.3585 -1.3050 17 6 2.5701 -10.6195 -0.4260 18 9 3.8673 -11.0714 -0.1611 19 9 1.7178 -11.6397 -0.8620 20 6 1.9750 -9.7596 0.7015 21 9 2.5281 -10.0238 1.9591 22 9 0.5762 -9.7413 0.7162 23 1 -0.4849 0.8401 0.0004 24 1 0.6240 -2.5566 -0.8903 25 1 0.6246 -2.5571 0.8897 26 1 2.8725 -3.6048 0.8878 27 1 2.8712 -3.6040 -0.8921 28 1 0.8543 -5.0449 0.8894 29 1 0.8525 -5.0447 -0.8905 30 1 3.1003 -6.0924 -0.8922 31 1 3.1016 -6.0924 0.8877 32 1 1.5847 -9.2353 -1.8435 33 1 3.3988 -9.2406 -1.9450 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224690467.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:48 Heat of formation + Delta-G solvation = -250.548975 kcal Electronic energy + Delta-G solvation = -20546.646842 eV Core-core repulsion = 16492.898263 eV Total energy + Delta-G solvation = -4053.748579 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.098 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -50.77521 -49.66314 -49.00194 -48.23645 -39.93638 -37.20224 -35.97229 -34.18542 -30.52589 -26.92981 -26.77396 -25.66798 -23.46208 -22.09306 -21.59176 -19.70324 -19.51754 -18.71101 -18.38881 -18.02447 -17.37482 -17.00139 -16.85428 -16.48721 -15.76429 -15.52877 -15.38365 -15.21748 -15.13053 -14.89881 -14.86229 -14.56399 -14.33378 -13.75568 -13.64223 -13.56386 -12.85302 -12.81186 -12.50379 -12.37866 -12.34757 -12.07459 -11.90012 -11.43380 -11.31519 -11.08904 -10.74151 -10.53459 -8.18622 -6.30190 1.29788 1.41666 1.44750 1.52673 1.92273 2.04552 2.41698 2.44642 2.63272 2.81523 3.10851 3.14637 3.63396 3.82200 3.93281 4.09112 4.19722 4.44951 4.46882 4.56157 4.63828 4.71869 4.86384 5.17509 5.26775 5.31650 5.55244 5.77890 5.87469 5.94376 6.25821 6.88033 7.39472 8.93188 Molecular weight = 270.10amu Principal moments of inertia in cm(-1) A = 0.049067 B = 0.002862 C = 0.002829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 570.516709 B = 9781.513400 C = 9895.231774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.004 4.004 3 Si 0.966 3.034 4 H -0.264 1.264 5 H -0.286 1.286 6 H -0.266 1.266 7 C -0.544 4.544 8 H 0.064 0.936 9 C 0.020 3.980 10 C -0.094 4.094 11 C -0.113 4.113 12 C 0.064 3.936 13 O -0.372 6.372 14 C 0.049 3.951 15 H 0.158 0.842 16 C -0.160 4.160 17 C 0.246 3.754 18 F -0.154 7.154 19 F -0.174 7.174 20 C 0.219 3.781 21 F -0.179 7.179 22 F -0.161 7.161 23 H 0.263 0.737 24 H -0.009 1.009 25 H -0.013 1.013 26 H 0.057 0.943 27 H 0.062 0.938 28 H 0.052 0.948 29 H 0.061 0.939 30 H 0.082 0.918 31 H 0.069 0.931 32 H 0.140 0.860 33 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.814 -22.097 -2.493 23.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.202 4.202 3 Si 0.791 3.209 4 H -0.189 1.189 5 H -0.211 1.211 6 H -0.191 1.191 7 C -0.582 4.582 8 H 0.083 0.917 9 C -0.017 4.017 10 C -0.132 4.132 11 C -0.151 4.151 12 C -0.011 4.011 13 O -0.290 6.290 14 C -0.011 4.011 15 H 0.175 0.825 16 C -0.198 4.198 17 C 0.208 3.792 18 F -0.135 7.135 19 F -0.155 7.155 20 C 0.181 3.819 21 F -0.160 7.160 22 F -0.141 7.141 23 H 0.072 0.928 24 H 0.009 0.991 25 H 0.006 0.994 26 H 0.076 0.924 27 H 0.081 0.919 28 H 0.071 0.929 29 H 0.079 0.921 30 H 0.100 0.900 31 H 0.087 0.913 32 H 0.158 0.842 33 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 8.450 -22.040 -2.455 23.731 hybrid contribution -0.147 0.590 0.506 0.791 sum 8.303 -21.450 -1.948 23.083 Atomic orbital electron populations 1.70107 1.07940 1.27821 1.51771 1.26036 0.95763 1.03559 0.94795 0.85483 0.78226 0.77948 0.79289 1.18917 1.21110 1.19110 1.21731 0.93731 0.92355 1.50414 0.91747 1.19040 0.94624 0.93362 0.94717 1.21348 0.97973 0.92468 1.01371 1.21485 0.98440 0.92980 1.02181 1.22836 0.94528 0.81195 1.02551 1.88019 1.33236 1.13621 1.94145 1.24707 0.97220 0.84930 0.94240 0.82459 1.24600 1.10549 0.86823 0.97823 1.22807 0.75523 0.85348 0.95571 1.93112 1.35527 1.90545 1.94305 1.93087 1.69470 1.62992 1.89908 1.24298 0.77502 0.99052 0.81046 1.93074 1.84193 1.94629 1.44097 1.93082 1.27734 1.96884 1.96404 0.92828 0.99085 0.99412 0.92419 0.91887 0.92906 0.92061 0.89980 0.91277 0.84201 0.82428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.31 13.29 21.45 0.28 -57.02 16 2 C 0.00 -0.23 5.46 84.65 0.46 0.23 16 3 Si 0.97 43.74 29.54 68.60 2.03 45.77 16 4 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 5 H -0.29 -12.75 7.11 99.48 0.71 -12.04 16 6 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 7 C -0.54 -30.60 9.11 25.60 0.23 -30.36 16 8 H 0.06 3.40 7.74 -2.91 -0.02 3.38 16 9 C 0.02 1.02 4.97 29.85 0.15 1.17 16 10 C -0.09 -3.57 5.15 30.59 0.16 -3.41 16 11 C -0.11 -3.57 5.58 30.59 0.17 -3.40 16 12 C 0.06 1.43 5.78 71.98 0.42 1.85 16 13 O -0.37 -8.54 10.07 -148.98 -1.50 -10.04 16 14 C 0.05 0.79 4.15 31.12 0.13 0.91 16 15 H 0.16 1.63 7.87 -2.39 -0.02 1.61 16 16 C -0.16 -1.81 7.68 31.12 0.24 -1.57 16 17 C 0.25 4.02 3.18 31.12 0.10 4.12 16 18 F -0.15 -2.52 17.17 44.97 0.77 -1.75 16 19 F -0.17 -3.39 17.21 44.97 0.77 -2.62 16 20 C 0.22 4.49 3.11 31.12 0.10 4.58 16 21 F -0.18 -4.08 17.20 44.97 0.77 -3.30 16 22 F -0.16 -4.07 16.88 44.97 0.76 -3.31 16 23 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 24 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 25 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 26 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 27 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 28 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 29 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 30 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.14 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.16 0.74 8.14 -2.39 -0.02 0.72 16 Total: -1.00 -67.65 302.19 7.16 -60.49 By element: Atomic # 1 Polarization: -3.45 SS G_CDS: 1.11 Total: -2.34 kcal Atomic # 6 Polarization: -28.03 SS G_CDS: 2.15 Total: -25.88 kcal Atomic # 7 Polarization: -57.31 SS G_CDS: 0.28 Total: -57.02 kcal Atomic # 8 Polarization: -8.54 SS G_CDS: -1.50 Total: -10.04 kcal Atomic # 9 Polarization: -14.06 SS G_CDS: 3.08 Total: -10.98 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.77 kcal Total: -67.65 7.16 -60.49 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224690467.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -190.057 kcal (2) G-P(sol) polarization free energy of solvation -67.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -257.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -250.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds