Wall clock time and date at job start Mon Mar 30 2020 01:32:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99776 * 2 1 4 4 H 1.48501 * 109.47310 * 240.00219 * 3 2 1 5 5 H 1.48502 * 109.46962 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47089 * 120.00390 * 3 2 1 7 7 C 1.37872 * 120.00164 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00218 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00016 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.47274 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.47129 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.47090 * 180.02562 * 11 10 9 13 13 O 1.42898 * 109.47353 * 179.97438 * 12 11 10 14 14 C 1.42902 * 113.99995 * 179.97438 * 13 12 11 15 15 H 1.09000 * 112.85100 * 18.80773 * 14 13 12 16 16 C 1.53787 * 113.60963 * 150.00209 * 14 13 12 17 17 C 1.53784 * 87.07923 * 140.06730 * 16 14 13 18 18 F 1.39901 * 113.61414 * 89.11430 * 17 16 14 19 19 F 1.39895 * 113.61242 * 220.01912 * 17 16 14 20 20 C 1.53779 * 87.08045 * 334.56667 * 17 16 14 21 21 F 1.39897 * 113.61581 * 270.88458 * 20 17 16 22 22 F 1.39904 * 113.61600 * 139.98502 * 20 17 16 23 23 H 0.96998 * 120.00353 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.47292 * 60.00413 * 9 7 2 25 25 H 1.09005 * 109.47346 * 300.00461 * 9 7 2 26 26 H 1.09001 * 109.46793 * 59.99900 * 10 9 7 27 27 H 1.08997 * 109.46901 * 300.00630 * 10 9 7 28 28 H 1.09001 * 109.47496 * 60.00169 * 11 10 9 29 29 H 1.09005 * 109.47119 * 299.99600 * 11 10 9 30 30 H 1.09001 * 109.47047 * 59.99608 * 12 11 10 31 31 H 1.09005 * 109.46927 * 300.00062 * 12 11 10 32 32 H 1.09004 * 113.61202 * 254.61483 * 16 14 13 33 33 H 1.08994 * 113.61447 * 25.51914 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7464 0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4804 -4.9871 -0.0012 12 6 2.4746 -6.1500 -0.0005 13 8 1.7602 -7.3875 -0.0005 14 6 2.6002 -8.5436 -0.0005 15 1 3.6182 -8.3271 0.3233 16 6 1.9750 -9.7592 0.7040 17 6 2.5729 -10.6199 -0.4215 18 9 3.8700 -11.0705 -0.1536 19 9 1.7215 -11.6399 -0.8594 20 6 2.5281 -9.3598 -1.3018 21 9 1.3234 -9.2033 -1.9955 22 9 3.6519 -9.2084 -2.1213 23 1 -0.4850 0.8400 0.0004 24 1 0.6241 -2.5567 -0.8903 25 1 0.6246 -2.5571 0.8897 26 1 2.8720 -3.6043 0.8895 27 1 2.8720 -3.6042 -0.8904 28 1 0.8540 -5.0446 -0.8914 29 1 0.8534 -5.0451 0.8886 30 1 3.1007 -6.0922 0.8899 31 1 3.1019 -6.0921 -0.8901 32 1 2.4041 -9.9637 1.6849 33 1 0.8852 -9.7465 0.7119 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224690473.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:50 Heat of formation + Delta-G solvation = -233.081334 kcal Electronic energy + Delta-G solvation = -20615.763935 eV Core-core repulsion = 16562.772810 eV Total energy + Delta-G solvation = -4052.991125 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.098 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -49.97240 -48.83255 -48.18613 -47.39648 -39.08255 -36.21866 -34.41359 -32.30638 -28.84889 -26.11294 -25.48908 -24.52482 -21.95712 -21.16988 -20.12007 -18.88052 -18.71360 -17.98422 -17.20016 -16.62056 -16.25901 -16.14130 -15.59944 -14.94505 -14.74509 -14.58575 -14.45279 -14.31296 -14.14358 -13.95715 -13.82129 -13.56535 -13.01698 -12.47872 -12.28141 -12.04860 -11.66178 -11.45291 -11.39749 -11.05956 -10.74174 -10.61636 -10.49715 -9.86397 -9.71086 -9.36858 -9.09598 -8.35706 -6.00719 -4.03599 2.09095 2.64200 2.86945 3.13041 3.32497 3.37068 3.38559 3.39331 3.51519 3.85255 4.30515 4.45067 4.58093 4.63461 4.93895 5.13105 5.17376 5.29342 5.34941 5.56091 5.95781 5.97898 6.35327 6.68455 6.74298 6.85946 7.10126 7.65964 7.80148 7.99056 8.40845 9.03386 9.60523 11.10586 Molecular weight = 270.10amu Principal moments of inertia in cm(-1) A = 0.049542 B = 0.002922 C = 0.002896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 565.038422 B = 9580.323939 C = 9667.159800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.523 4.523 8 H 0.054 0.946 9 C 0.021 3.979 10 C -0.108 4.108 11 C -0.117 4.117 12 C 0.053 3.947 13 O -0.347 6.347 14 C 0.052 3.948 15 H 0.131 0.869 16 C -0.158 4.158 17 C 0.240 3.760 18 F -0.155 7.155 19 F -0.165 7.165 20 C 0.219 3.781 21 F -0.144 7.144 22 F -0.171 7.171 23 H 0.261 0.739 24 H 0.017 0.983 25 H 0.017 0.983 26 H 0.049 0.951 27 H 0.049 0.951 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.057 0.943 31 H 0.054 0.946 32 H 0.125 0.875 33 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.696 -22.527 1.329 23.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.561 4.561 8 H 0.073 0.927 9 C -0.016 4.016 10 C -0.145 4.145 11 C -0.154 4.154 12 C -0.022 4.022 13 O -0.264 6.264 14 C -0.009 4.009 15 H 0.149 0.851 16 C -0.196 4.196 17 C 0.202 3.798 18 F -0.136 7.136 19 F -0.146 7.146 20 C 0.181 3.819 21 F -0.124 7.124 22 F -0.151 7.151 23 H 0.071 0.929 24 H 0.035 0.965 25 H 0.035 0.965 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.086 0.914 29 H 0.087 0.913 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.144 0.856 33 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 5.342 -22.428 1.274 23.090 hybrid contribution 0.784 0.716 -0.401 1.135 sum 6.126 -21.712 0.873 22.576 Atomic orbital electron populations 1.69952 1.06065 1.26751 1.50689 1.25029 0.94855 0.99273 0.95312 0.86653 0.79579 0.83126 0.78606 1.20235 1.21272 1.20248 1.21222 0.92990 0.91126 1.50810 0.92749 1.19088 0.93958 0.91113 0.97402 1.21591 0.99258 0.93234 1.00465 1.21674 0.98002 0.92569 1.03184 1.23061 0.95943 0.82559 1.00654 1.88078 1.31984 1.12947 1.93421 1.24453 0.98365 0.88057 0.90071 0.85135 1.24259 1.05575 0.90802 0.98970 1.22786 0.76510 0.83631 0.96917 1.93107 1.36248 1.90244 1.93979 1.93101 1.69038 1.62270 1.90172 1.24156 0.73928 0.96743 0.87118 1.93119 1.42963 1.95675 1.80661 1.93095 1.50396 1.95990 1.75660 0.92909 0.96472 0.96484 0.93178 0.93193 0.91351 0.91324 0.92432 0.92725 0.85640 0.84368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.95 13.29 55.43 0.74 -26.21 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.52 -14.76 9.11 -34.44 -0.31 -15.07 16 8 H 0.05 1.48 7.74 -52.48 -0.41 1.07 16 9 C 0.02 0.55 4.97 -27.88 -0.14 0.41 16 10 C -0.11 -2.12 5.15 -26.73 -0.14 -2.26 16 11 C -0.12 -1.91 5.58 -26.73 -0.15 -2.06 16 12 C 0.05 0.69 5.78 37.16 0.21 0.91 16 13 O -0.35 -4.32 10.08 -35.23 -0.35 -4.67 16 14 C 0.05 0.48 4.14 -25.92 -0.11 0.37 16 15 H 0.13 0.92 7.87 -51.93 -0.41 0.51 16 16 C -0.16 -1.10 7.68 -25.91 -0.20 -1.30 16 17 C 0.24 2.19 3.19 -25.92 -0.08 2.11 16 18 F -0.16 -1.44 17.17 2.25 0.04 -1.40 16 19 F -0.17 -1.71 17.20 2.25 0.04 -1.67 16 20 C 0.22 2.40 3.12 -25.92 -0.08 2.32 16 21 F -0.14 -1.86 16.88 2.25 0.04 -1.82 16 22 F -0.17 -2.05 17.20 2.25 0.04 -2.01 16 23 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 24 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 27 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 28 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 29 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.13 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.14 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 302.19 15.07 4.55 4.55 Total: -1.00 -30.99 302.19 -5.20 -36.19 By element: Atomic # 1 Polarization: -2.25 SS G_CDS: -4.18 Total: -6.43 kcal Atomic # 6 Polarization: -11.96 SS G_CDS: -1.09 Total: -13.06 kcal Atomic # 7 Polarization: -26.95 SS G_CDS: 0.74 Total: -26.21 kcal Atomic # 8 Polarization: -4.32 SS G_CDS: -0.35 Total: -4.67 kcal Atomic # 9 Polarization: -7.07 SS G_CDS: 0.15 Total: -6.91 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -30.99 -5.20 -36.19 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224690473.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -196.892 kcal (2) G-P(sol) polarization free energy of solvation -30.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -227.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -233.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds