Wall clock time and date at job start Mon Mar 30 2020 01:32:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99776 * 2 1 4 4 H 1.48501 * 109.47310 * 240.00219 * 3 2 1 5 5 H 1.48502 * 109.46962 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47089 * 120.00390 * 3 2 1 7 7 C 1.37872 * 120.00164 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00218 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00016 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.47274 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.47129 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.47090 * 180.02562 * 11 10 9 13 13 O 1.42898 * 109.47353 * 179.97438 * 12 11 10 14 14 C 1.42902 * 113.99995 * 179.97438 * 13 12 11 15 15 H 1.09000 * 112.85100 * 18.80773 * 14 13 12 16 16 C 1.53787 * 113.60963 * 150.00209 * 14 13 12 17 17 C 1.53784 * 87.07923 * 140.06730 * 16 14 13 18 18 F 1.39901 * 113.61414 * 89.11430 * 17 16 14 19 19 F 1.39895 * 113.61242 * 220.01912 * 17 16 14 20 20 C 1.53779 * 87.08045 * 334.56667 * 17 16 14 21 21 F 1.39897 * 113.61581 * 270.88458 * 20 17 16 22 22 F 1.39904 * 113.61600 * 139.98502 * 20 17 16 23 23 H 0.96998 * 120.00353 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.47292 * 60.00413 * 9 7 2 25 25 H 1.09005 * 109.47346 * 300.00461 * 9 7 2 26 26 H 1.09001 * 109.46793 * 59.99900 * 10 9 7 27 27 H 1.08997 * 109.46901 * 300.00630 * 10 9 7 28 28 H 1.09001 * 109.47496 * 60.00169 * 11 10 9 29 29 H 1.09005 * 109.47119 * 299.99600 * 11 10 9 30 30 H 1.09001 * 109.47047 * 59.99608 * 12 11 10 31 31 H 1.09005 * 109.46927 * 300.00062 * 12 11 10 32 32 H 1.09004 * 113.61202 * 254.61483 * 16 14 13 33 33 H 1.08994 * 113.61447 * 25.51914 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7464 0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4804 -4.9871 -0.0012 12 6 2.4746 -6.1500 -0.0005 13 8 1.7602 -7.3875 -0.0005 14 6 2.6002 -8.5436 -0.0005 15 1 3.6182 -8.3271 0.3233 16 6 1.9750 -9.7592 0.7040 17 6 2.5729 -10.6199 -0.4215 18 9 3.8700 -11.0705 -0.1536 19 9 1.7215 -11.6399 -0.8594 20 6 2.5281 -9.3598 -1.3018 21 9 1.3234 -9.2033 -1.9955 22 9 3.6519 -9.2084 -2.1213 23 1 -0.4850 0.8400 0.0004 24 1 0.6241 -2.5567 -0.8903 25 1 0.6246 -2.5571 0.8897 26 1 2.8720 -3.6043 0.8895 27 1 2.8720 -3.6042 -0.8904 28 1 0.8540 -5.0446 -0.8914 29 1 0.8534 -5.0451 0.8886 30 1 3.1007 -6.0922 0.8899 31 1 3.1019 -6.0921 -0.8901 32 1 2.4041 -9.9637 1.6849 33 1 0.8852 -9.7465 0.7119 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224690473.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:50 Heat of formation + Delta-G solvation = -250.966257 kcal Electronic energy + Delta-G solvation = -20616.539484 eV Core-core repulsion = 16562.772810 eV Total energy + Delta-G solvation = -4053.766674 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.098 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -50.76320 -49.65089 -48.99470 -48.22797 -39.92290 -37.23629 -35.99138 -34.19522 -30.53559 -26.93462 -26.75586 -25.68043 -23.48543 -22.10275 -21.57822 -19.70253 -19.50156 -18.78757 -18.42540 -18.00202 -17.43852 -16.98337 -16.73930 -16.48769 -15.75652 -15.62137 -15.36807 -15.21942 -15.11150 -14.89469 -14.85353 -14.56715 -14.35080 -13.80668 -13.56814 -13.45482 -12.92689 -12.76931 -12.64064 -12.36999 -12.33908 -12.08715 -11.97360 -11.43940 -11.32709 -11.10166 -10.74472 -10.54004 -8.19107 -6.30683 1.34436 1.41141 1.44256 1.52164 1.93448 2.08393 2.38901 2.42674 2.63890 2.82908 3.06262 3.14051 3.65167 3.82988 3.92067 4.05885 4.17906 4.42586 4.47121 4.54429 4.60481 4.70305 4.85165 5.15839 5.25308 5.29789 5.54224 5.76843 5.86308 5.91482 6.25339 6.87199 7.38898 8.92685 Molecular weight = 270.10amu Principal moments of inertia in cm(-1) A = 0.049542 B = 0.002922 C = 0.002896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 565.038422 B = 9580.323939 C = 9667.159800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.003 4.003 3 Si 0.966 3.034 4 H -0.267 1.267 5 H -0.285 1.285 6 H -0.264 1.264 7 C -0.545 4.545 8 H 0.063 0.937 9 C 0.021 3.979 10 C -0.095 4.095 11 C -0.111 4.111 12 C 0.061 3.939 13 O -0.364 6.364 14 C 0.050 3.950 15 H 0.159 0.841 16 C -0.140 4.140 17 C 0.244 3.756 18 F -0.155 7.155 19 F -0.174 7.174 20 C 0.197 3.803 21 F -0.162 7.162 22 F -0.182 7.182 23 H 0.263 0.737 24 H -0.012 1.012 25 H -0.007 1.007 26 H 0.063 0.937 27 H 0.054 0.946 28 H 0.052 0.948 29 H 0.065 0.935 30 H 0.084 0.916 31 H 0.059 0.941 32 H 0.162 0.838 33 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.434 -22.950 2.410 24.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.201 4.201 3 Si 0.790 3.210 4 H -0.192 1.192 5 H -0.210 1.210 6 H -0.189 1.189 7 C -0.583 4.583 8 H 0.081 0.919 9 C -0.017 4.017 10 C -0.133 4.133 11 C -0.149 4.149 12 C -0.014 4.014 13 O -0.282 6.282 14 C -0.010 4.010 15 H 0.176 0.824 16 C -0.178 4.178 17 C 0.206 3.794 18 F -0.135 7.135 19 F -0.155 7.155 20 C 0.158 3.842 21 F -0.142 7.142 22 F -0.163 7.163 23 H 0.072 0.928 24 H 0.006 0.994 25 H 0.011 0.989 26 H 0.081 0.919 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.084 0.916 30 H 0.102 0.898 31 H 0.077 0.923 32 H 0.179 0.821 33 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 7.092 -22.872 2.354 24.062 hybrid contribution 0.214 0.794 -0.779 1.133 sum 7.306 -22.079 1.574 23.310 Atomic orbital electron populations 1.70097 1.07902 1.27847 1.51717 1.26023 0.95773 1.03520 0.94766 0.85487 0.78243 0.77979 0.79265 1.19186 1.21010 1.18923 1.21725 0.93698 0.92397 1.50500 0.91859 1.19034 0.94577 0.93249 0.94793 1.21359 0.98034 0.92634 1.01253 1.21471 0.98334 0.92755 1.02345 1.22848 0.94681 0.81729 1.02184 1.88029 1.33078 1.13486 1.93570 1.24794 0.99700 0.87323 0.89212 0.82369 1.24313 1.05829 0.88050 0.99565 1.22847 0.76548 0.82875 0.97180 1.93111 1.36315 1.90201 1.93893 1.93083 1.69357 1.62653 1.90411 1.24790 0.73042 0.98886 0.87443 1.93074 1.44027 1.95943 1.81190 1.93067 1.50827 1.96214 1.76142 0.92793 0.99391 0.98894 0.91875 0.92726 0.92882 0.91635 0.89812 0.92264 0.82050 0.84046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.36 13.29 21.45 0.28 -57.07 16 2 C 0.00 -0.19 5.46 84.65 0.46 0.27 16 3 Si 0.97 44.00 29.54 68.60 2.03 46.03 16 4 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 5 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 6 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 7 C -0.55 -30.90 9.11 25.60 0.23 -30.66 16 8 H 0.06 3.38 7.74 -2.91 -0.02 3.36 16 9 C 0.02 1.08 4.97 29.85 0.15 1.23 16 10 C -0.10 -3.69 5.15 30.59 0.16 -3.53 16 11 C -0.11 -3.58 5.58 30.59 0.17 -3.41 16 12 C 0.06 1.45 5.78 71.98 0.42 1.86 16 13 O -0.36 -8.32 10.08 -148.98 -1.50 -9.82 16 14 C 0.05 0.80 4.14 31.12 0.13 0.93 16 15 H 0.16 1.63 7.87 -2.39 -0.02 1.61 16 16 C -0.14 -1.53 7.68 31.12 0.24 -1.29 16 17 C 0.24 3.99 3.19 31.12 0.10 4.09 16 18 F -0.15 -2.53 17.17 44.97 0.77 -1.76 16 19 F -0.17 -3.41 17.20 44.97 0.77 -2.64 16 20 C 0.20 4.08 3.12 31.12 0.10 4.17 16 21 F -0.16 -4.17 16.88 44.97 0.76 -3.41 16 22 F -0.18 -4.23 17.20 44.97 0.77 -3.46 16 23 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 24 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 25 H -0.01 -0.41 8.14 -2.38 -0.02 -0.43 16 26 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 27 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 28 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 29 H 0.06 2.12 8.14 -2.38 -0.02 2.10 16 30 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.06 1.35 8.14 -2.38 -0.02 1.33 16 32 H 0.16 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.14 1.52 8.14 -2.39 -0.02 1.50 16 Total: -1.00 -67.94 302.19 7.16 -60.79 By element: Atomic # 1 Polarization: -3.42 SS G_CDS: 1.11 Total: -2.31 kcal Atomic # 6 Polarization: -28.50 SS G_CDS: 2.15 Total: -26.35 kcal Atomic # 7 Polarization: -57.36 SS G_CDS: 0.28 Total: -57.07 kcal Atomic # 8 Polarization: -8.32 SS G_CDS: -1.50 Total: -9.82 kcal Atomic # 9 Polarization: -14.34 SS G_CDS: 3.08 Total: -11.26 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.03 kcal Total: -67.94 7.16 -60.79 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224690473.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -190.180 kcal (2) G-P(sol) polarization free energy of solvation -67.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -258.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -250.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds