Wall clock time and date at job start Mon Mar 30 2020 01:31:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86798 * 119.99981 * 2 1 4 4 H 1.48493 * 109.47326 * 89.99918 * 3 2 1 5 5 H 1.48506 * 109.46545 * 209.99668 * 3 2 1 6 6 H 1.48498 * 109.47210 * 329.99379 * 3 2 1 7 7 C 1.38812 * 119.99535 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99468 * 179.97438 * 7 2 1 9 9 N 1.36931 * 120.00429 * 0.02562 * 7 2 1 10 10 C 1.47434 * 125.64526 * 359.68990 * 9 7 2 11 11 C 1.55137 * 104.71970 * 155.81715 * 10 9 7 12 12 C 1.55158 * 101.48321 * 37.29493 * 11 10 9 13 13 H 1.08998 * 110.71948 * 82.69734 * 12 11 10 14 14 O 1.42904 * 110.71496 * 205.96593 * 12 11 10 15 15 C 1.36015 * 116.99425 * 204.97533 * 14 12 11 16 16 C 1.38997 * 120.45466 * 0.02562 * 15 14 12 17 17 C 1.38582 * 118.43493 * 179.97438 * 16 15 14 18 18 C 1.38441 * 119.24978 * 359.97438 * 17 16 15 19 19 F 1.35098 * 119.58310 * 180.02562 * 18 17 16 20 20 N 1.32088 * 120.84182 * 0.02671 * 18 17 16 21 21 C 1.32052 * 121.70518 * 359.68125 * 20 18 17 22 22 F 1.35099 * 119.66352 * 180.30944 * 21 20 18 23 23 C 1.47017 * 125.65325 * 179.97438 * 9 7 2 24 24 H 0.97005 * 119.99717 * 0.02562 * 1 2 3 25 25 H 1.08990 * 110.36592 * 274.74448 * 10 9 7 26 26 H 1.08998 * 110.36718 * 37.06988 * 10 9 7 27 27 H 1.09001 * 111.19036 * 279.19165 * 11 10 9 28 28 H 1.08996 * 110.93520 * 155.28964 * 11 10 9 29 29 H 1.08002 * 120.78346 * 359.97438 * 16 15 14 30 30 H 1.07999 * 120.37776 * 179.97438 * 17 16 15 31 31 H 1.08999 * 109.88360 * 300.44772 * 23 9 7 32 32 H 1.09008 * 109.87914 * 61.45235 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 1.4000 5 1 3.5478 1.4400 -0.7000 6 1 1.4478 2.6526 -0.7002 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 -0.1416 -2.5331 0.0065 11 6 -0.4019 -3.9325 -0.6105 12 6 0.7783 -4.7524 -0.0255 13 1 0.5459 -5.0977 0.9819 14 8 1.1000 -5.8538 -0.8773 15 6 1.7075 -6.9246 -0.2992 16 6 1.9916 -6.9236 1.0615 17 6 2.6110 -8.0368 1.6070 18 6 2.9244 -9.1068 0.7863 19 9 3.5277 -10.1956 1.3112 20 7 2.6410 -9.0766 -0.5034 21 6 2.0463 -8.0368 -1.0592 22 9 1.7701 -8.0525 -2.3816 23 6 1.9316 -3.7275 0.0005 24 1 -0.4850 0.8401 -0.0004 25 1 -0.5230 -2.4888 1.0265 26 1 -0.6020 -1.7575 -0.6056 27 1 -0.3525 -3.8986 -1.6989 28 1 -1.3592 -4.3331 -0.2772 29 1 1.7357 -6.0753 1.6790 30 1 2.8465 -8.0693 2.6605 31 1 2.5577 -3.8511 -0.8831 32 1 2.5308 -3.8632 0.9010 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001228534014.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:48 Heat of formation + Delta-G solvation = -44.882623 kcal Electronic energy + Delta-G solvation = -20219.120083 eV Core-core repulsion = 16624.979053 eV Total energy + Delta-G solvation = -3594.141030 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.092 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -49.23895 -49.07384 -40.72071 -38.75029 -36.45901 -32.76220 -32.46522 -30.19095 -29.24136 -27.60296 -24.93867 -24.16741 -23.53947 -20.54630 -20.44696 -18.89804 -18.37293 -18.06561 -17.07342 -16.82058 -16.22676 -15.71068 -15.37835 -14.92714 -14.78426 -14.67891 -13.99544 -13.71055 -13.41541 -13.33973 -12.76460 -12.63961 -12.49086 -11.93937 -11.61688 -11.11781 -10.89330 -10.77362 -10.63298 -10.28665 -10.20809 -10.08512 -9.98195 -9.73975 -8.78986 -8.43236 -7.01370 -5.78913 -3.22119 0.50269 0.66804 2.62073 3.09341 3.10907 3.33489 3.39065 3.40950 3.74444 4.17829 4.34791 4.40243 4.77313 4.95227 5.05641 5.32283 5.33696 5.38083 5.44976 5.50510 5.60051 5.97609 6.13993 6.24394 6.31340 6.38683 6.46158 6.96128 7.22323 7.29673 7.48048 7.68813 8.19811 9.07017 9.67218 10.28726 11.25306 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.034188 B = 0.004097 C = 0.003930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.799583 B = 6831.817374 C = 7122.491350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.008 4.008 3 Si 0.918 3.082 4 H -0.288 1.288 5 H -0.280 1.280 6 H -0.289 1.289 7 C -0.228 4.228 8 H 0.079 0.921 9 N -0.600 5.600 10 C 0.152 3.848 11 C -0.135 4.135 12 C 0.062 3.938 13 H 0.083 0.917 14 O -0.283 6.283 15 C 0.071 3.929 16 C -0.117 4.117 17 C -0.153 4.153 18 C 0.293 3.707 19 F -0.108 7.108 20 N -0.511 5.511 21 C 0.312 3.688 22 F -0.095 7.095 23 C 0.119 3.881 24 H 0.254 0.746 25 H 0.019 0.981 26 H 0.116 0.884 27 H 0.077 0.923 28 H 0.069 0.931 29 H 0.167 0.833 30 H 0.160 0.840 31 H 0.038 0.962 32 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.544 -14.281 3.260 14.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.203 4.203 3 Si 0.748 3.252 4 H -0.215 1.215 5 H -0.206 1.206 6 H -0.215 1.215 7 C -0.355 4.355 8 H 0.097 0.903 9 N -0.327 5.327 10 C 0.027 3.973 11 C -0.174 4.174 12 C 0.006 3.994 13 H 0.100 0.900 14 O -0.194 6.194 15 C 0.021 3.979 16 C -0.143 4.143 17 C -0.175 4.175 18 C 0.140 3.860 19 F -0.087 7.087 20 N -0.232 5.232 21 C 0.157 3.843 22 F -0.074 7.074 23 C -0.008 4.008 24 H 0.065 0.935 25 H 0.037 0.963 26 H 0.134 0.866 27 H 0.096 0.904 28 H 0.088 0.912 29 H 0.185 0.815 30 H 0.177 0.823 31 H 0.056 0.944 32 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 1.667 -14.732 2.507 15.037 hybrid contribution 0.442 1.152 0.577 1.362 sum 2.109 -13.580 3.084 14.085 Atomic orbital electron populations 1.69737 1.04957 1.25115 1.57231 1.24802 0.95767 0.97841 1.01924 0.86025 0.78583 0.82968 0.77634 1.21500 1.20580 1.21496 1.19076 0.90604 0.82110 1.43748 0.90285 1.44359 1.01860 0.99320 1.87191 1.22089 0.84850 0.91782 0.98593 1.23292 0.94572 0.97600 1.01946 1.23942 0.98271 0.83802 0.93339 0.89955 1.86332 1.71707 1.23730 1.37670 1.19767 0.96734 0.89235 0.92208 1.21687 0.99114 1.00152 0.93326 1.21707 1.01217 0.92302 1.02247 1.17328 0.97213 0.84856 0.86584 1.91644 1.80332 1.52293 1.84411 1.66069 1.15471 1.27930 1.13712 1.16628 0.99186 0.88725 0.79754 1.91682 1.90664 1.96042 1.29010 1.21676 0.93541 0.86491 0.99088 0.93478 0.96340 0.86599 0.90431 0.91231 0.81545 0.82273 0.94437 0.95453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.67 10.08 55.49 0.56 -25.12 16 2 C -0.01 -0.21 5.49 -17.43 -0.10 -0.30 16 3 Si 0.92 21.30 29.55 -169.99 -5.02 16.27 16 4 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 6 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.23 -6.09 10.27 -15.06 -0.15 -6.25 16 8 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 9 N -0.60 -14.58 3.39 -169.93 -0.58 -15.16 16 10 C 0.15 3.42 5.91 -2.40 -0.01 3.40 16 11 C -0.14 -2.39 6.82 -24.46 -0.17 -2.56 16 12 C 0.06 1.01 2.84 -24.90 -0.07 0.94 16 13 H 0.08 1.12 5.96 -51.93 -0.31 0.82 16 14 O -0.28 -4.49 9.74 -19.79 -0.19 -4.68 16 15 C 0.07 0.99 6.71 -39.05 -0.26 0.72 16 16 C -0.12 -1.29 9.11 -39.17 -0.36 -1.65 16 17 C -0.15 -1.49 10.08 -39.38 -0.40 -1.88 16 18 C 0.29 3.53 8.40 -17.37 -0.15 3.39 16 19 F -0.11 -1.25 17.29 2.25 0.04 -1.22 16 20 N -0.51 -7.32 10.38 -13.84 -0.14 -7.47 16 21 C 0.31 4.54 8.43 -17.21 -0.14 4.39 16 22 F -0.10 -1.46 17.14 2.25 0.04 -1.42 16 23 C 0.12 2.32 7.01 -3.07 -0.02 2.30 16 24 H 0.25 6.88 8.31 -40.82 -0.34 6.54 16 25 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.12 2.97 5.86 -51.93 -0.30 2.67 16 27 H 0.08 1.42 8.14 -51.93 -0.42 0.99 16 28 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 29 H 0.17 1.61 6.00 -52.49 -0.31 1.30 16 30 H 0.16 1.02 8.06 -52.49 -0.42 0.60 16 31 H 0.04 0.77 8.06 -51.93 -0.42 0.35 16 32 H 0.03 0.51 8.14 -51.92 -0.42 0.09 16 LS Contribution 282.60 15.07 4.26 4.26 Total: -1.00 -29.11 282.60 -5.88 -34.99 By element: Atomic # 1 Polarization: 0.04 SS G_CDS: -3.01 Total: -2.97 kcal Atomic # 6 Polarization: 4.34 SS G_CDS: -1.83 Total: 2.51 kcal Atomic # 7 Polarization: -47.58 SS G_CDS: -0.16 Total: -47.74 kcal Atomic # 8 Polarization: -4.49 SS G_CDS: -0.19 Total: -4.68 kcal Atomic # 9 Polarization: -2.71 SS G_CDS: 0.08 Total: -2.63 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -29.11 -5.88 -34.99 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228534014.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.895 kcal (2) G-P(sol) polarization free energy of solvation -29.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds