Wall clock time and date at job start Mon Mar 30 2020 01:31:48
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31624 * 1
3 3 Si 1.86798 * 119.99981 * 2 1
4 4 H 1.48493 * 109.47326 * 89.99918 * 3 2 1
5 5 H 1.48506 * 109.46545 * 209.99668 * 3 2 1
6 6 H 1.48498 * 109.47210 * 329.99379 * 3 2 1
7 7 C 1.38812 * 119.99535 * 179.97438 * 2 1 3
8 8 H 1.08002 * 119.99468 * 179.97438 * 7 2 1
9 9 N 1.36931 * 120.00429 * 0.02562 * 7 2 1
10 10 C 1.47434 * 125.64526 * 359.68990 * 9 7 2
11 11 C 1.55137 * 104.71970 * 155.81715 * 10 9 7
12 12 C 1.55158 * 101.48321 * 37.29493 * 11 10 9
13 13 H 1.08998 * 110.71948 * 82.69734 * 12 11 10
14 14 O 1.42904 * 110.71496 * 205.96593 * 12 11 10
15 15 C 1.36015 * 116.99425 * 204.97533 * 14 12 11
16 16 C 1.38997 * 120.45466 * 0.02562 * 15 14 12
17 17 C 1.38582 * 118.43493 * 179.97438 * 16 15 14
18 18 C 1.38441 * 119.24978 * 359.97438 * 17 16 15
19 19 F 1.35098 * 119.58310 * 180.02562 * 18 17 16
20 20 N 1.32088 * 120.84182 * 0.02671 * 18 17 16
21 21 C 1.32052 * 121.70518 * 359.68125 * 20 18 17
22 22 F 1.35099 * 119.66352 * 180.30944 * 21 20 18
23 23 C 1.47017 * 125.65325 * 179.97438 * 9 7 2
24 24 H 0.97005 * 119.99717 * 0.02562 * 1 2 3
25 25 H 1.08990 * 110.36592 * 274.74448 * 10 9 7
26 26 H 1.08998 * 110.36718 * 37.06988 * 10 9 7
27 27 H 1.09001 * 111.19036 * 279.19165 * 11 10 9
28 28 H 1.08996 * 110.93520 * 155.28964 * 11 10 9
29 29 H 1.08002 * 120.78346 * 359.97438 * 16 15 14
30 30 H 1.07999 * 120.37776 * 179.97438 * 17 16 15
31 31 H 1.08999 * 109.88360 * 300.44772 * 23 9 7
32 32 H 1.09008 * 109.87914 * 61.45235 * 23 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2502 1.6177 0.0000
4 1 2.4977 2.0464 1.4000
5 1 3.5478 1.4400 -0.7000
6 1 1.4478 2.6526 -0.7002
7 6 2.0102 -1.2022 0.0005
8 1 3.0902 -1.2022 0.0001
9 7 1.3255 -2.3881 0.0005
10 6 -0.1416 -2.5331 0.0065
11 6 -0.4019 -3.9325 -0.6105
12 6 0.7783 -4.7524 -0.0255
13 1 0.5459 -5.0977 0.9819
14 8 1.1000 -5.8538 -0.8773
15 6 1.7075 -6.9246 -0.2992
16 6 1.9916 -6.9236 1.0615
17 6 2.6110 -8.0368 1.6070
18 6 2.9244 -9.1068 0.7863
19 9 3.5277 -10.1956 1.3112
20 7 2.6410 -9.0766 -0.5034
21 6 2.0463 -8.0368 -1.0592
22 9 1.7701 -8.0525 -2.3816
23 6 1.9316 -3.7275 0.0005
24 1 -0.4850 0.8401 -0.0004
25 1 -0.5230 -2.4888 1.0265
26 1 -0.6020 -1.7575 -0.6056
27 1 -0.3525 -3.8986 -1.6989
28 1 -1.3592 -4.3331 -0.2772
29 1 1.7357 -6.0753 1.6790
30 1 2.8465 -8.0693 2.6605
31 1 2.5577 -3.8511 -0.8831
32 1 2.5308 -3.8632 0.9010
RHF calculation, no. of doubly occupied orbitals= 49
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001228534014.mol2 32
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:31:48
Heat of formation + Delta-G solvation = -44.882623 kcal
Electronic energy + Delta-G solvation = -20219.120083 eV
Core-core repulsion = 16624.979053 eV
Total energy + Delta-G solvation = -3594.141030 eV
No. of doubly occupied orbitals = 49
Molecular weight
(most abundant/longest-lived isotopes) = 270.092 amu
Computer time = 0.32 seconds
Orbital eigenvalues (eV)
-49.23895 -49.07384 -40.72071 -38.75029 -36.45901 -32.76220 -32.46522 -30.19095
-29.24136 -27.60296 -24.93867 -24.16741 -23.53947 -20.54630 -20.44696 -18.89804
-18.37293 -18.06561 -17.07342 -16.82058 -16.22676 -15.71068 -15.37835 -14.92714
-14.78426 -14.67891 -13.99544 -13.71055 -13.41541 -13.33973 -12.76460 -12.63961
-12.49086 -11.93937 -11.61688 -11.11781 -10.89330 -10.77362 -10.63298 -10.28665
-10.20809 -10.08512 -9.98195 -9.73975 -8.78986 -8.43236 -7.01370 -5.78913
-3.22119 0.50269 0.66804 2.62073 3.09341 3.10907 3.33489 3.39065
3.40950 3.74444 4.17829 4.34791 4.40243 4.77313 4.95227 5.05641
5.32283 5.33696 5.38083 5.44976 5.50510 5.60051 5.97609 6.13993
6.24394 6.31340 6.38683 6.46158 6.96128 7.22323 7.29673 7.48048
7.68813 8.19811 9.07017 9.67218 10.28726 11.25306
Molecular weight = 270.09amu
Principal moments of inertia in cm(-1)
A = 0.034188 B = 0.004097 C = 0.003930
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 818.799583 B = 6831.817374 C = 7122.491350
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.922 5.922
2 C -0.008 4.008
3 Si 0.918 3.082
4 H -0.288 1.288
5 H -0.280 1.280
6 H -0.289 1.289
7 C -0.228 4.228
8 H 0.079 0.921
9 N -0.600 5.600
10 C 0.152 3.848
11 C -0.135 4.135
12 C 0.062 3.938
13 H 0.083 0.917
14 O -0.283 6.283
15 C 0.071 3.929
16 C -0.117 4.117
17 C -0.153 4.153
18 C 0.293 3.707
19 F -0.108 7.108
20 N -0.511 5.511
21 C 0.312 3.688
22 F -0.095 7.095
23 C 0.119 3.881
24 H 0.254 0.746
25 H 0.019 0.981
26 H 0.116 0.884
27 H 0.077 0.923
28 H 0.069 0.931
29 H 0.167 0.833
30 H 0.160 0.840
31 H 0.038 0.962
32 H 0.028 0.972
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.544 -14.281 3.260 14.729
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.570 5.570
2 C -0.203 4.203
3 Si 0.748 3.252
4 H -0.215 1.215
5 H -0.206 1.206
6 H -0.215 1.215
7 C -0.355 4.355
8 H 0.097 0.903
9 N -0.327 5.327
10 C 0.027 3.973
11 C -0.174 4.174
12 C 0.006 3.994
13 H 0.100 0.900
14 O -0.194 6.194
15 C 0.021 3.979
16 C -0.143 4.143
17 C -0.175 4.175
18 C 0.140 3.860
19 F -0.087 7.087
20 N -0.232 5.232
21 C 0.157 3.843
22 F -0.074 7.074
23 C -0.008 4.008
24 H 0.065 0.935
25 H 0.037 0.963
26 H 0.134 0.866
27 H 0.096 0.904
28 H 0.088 0.912
29 H 0.185 0.815
30 H 0.177 0.823
31 H 0.056 0.944
32 H 0.045 0.955
Dipole moment (debyes) X Y Z Total
from point charges 1.667 -14.732 2.507 15.037
hybrid contribution 0.442 1.152 0.577 1.362
sum 2.109 -13.580 3.084 14.085
Atomic orbital electron populations
1.69737 1.04957 1.25115 1.57231 1.24802 0.95767 0.97841 1.01924
0.86025 0.78583 0.82968 0.77634 1.21500 1.20580 1.21496 1.19076
0.90604 0.82110 1.43748 0.90285 1.44359 1.01860 0.99320 1.87191
1.22089 0.84850 0.91782 0.98593 1.23292 0.94572 0.97600 1.01946
1.23942 0.98271 0.83802 0.93339 0.89955 1.86332 1.71707 1.23730
1.37670 1.19767 0.96734 0.89235 0.92208 1.21687 0.99114 1.00152
0.93326 1.21707 1.01217 0.92302 1.02247 1.17328 0.97213 0.84856
0.86584 1.91644 1.80332 1.52293 1.84411 1.66069 1.15471 1.27930
1.13712 1.16628 0.99186 0.88725 0.79754 1.91682 1.90664 1.96042
1.29010 1.21676 0.93541 0.86491 0.99088 0.93478 0.96340 0.86599
0.90431 0.91231 0.81545 0.82273 0.94437 0.95453
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.92 -25.67 10.08 55.49 0.56 -25.12 16
2 C -0.01 -0.21 5.49 -17.43 -0.10 -0.30 16
3 Si 0.92 21.30 29.55 -169.99 -5.02 16.27 16
4 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16
5 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16
6 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16
7 C -0.23 -6.09 10.27 -15.06 -0.15 -6.25 16
8 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16
9 N -0.60 -14.58 3.39 -169.93 -0.58 -15.16 16
10 C 0.15 3.42 5.91 -2.40 -0.01 3.40 16
11 C -0.14 -2.39 6.82 -24.46 -0.17 -2.56 16
12 C 0.06 1.01 2.84 -24.90 -0.07 0.94 16
13 H 0.08 1.12 5.96 -51.93 -0.31 0.82 16
14 O -0.28 -4.49 9.74 -19.79 -0.19 -4.68 16
15 C 0.07 0.99 6.71 -39.05 -0.26 0.72 16
16 C -0.12 -1.29 9.11 -39.17 -0.36 -1.65 16
17 C -0.15 -1.49 10.08 -39.38 -0.40 -1.88 16
18 C 0.29 3.53 8.40 -17.37 -0.15 3.39 16
19 F -0.11 -1.25 17.29 2.25 0.04 -1.22 16
20 N -0.51 -7.32 10.38 -13.84 -0.14 -7.47 16
21 C 0.31 4.54 8.43 -17.21 -0.14 4.39 16
22 F -0.10 -1.46 17.14 2.25 0.04 -1.42 16
23 C 0.12 2.32 7.01 -3.07 -0.02 2.30 16
24 H 0.25 6.88 8.31 -40.82 -0.34 6.54 16
25 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16
26 H 0.12 2.97 5.86 -51.93 -0.30 2.67 16
27 H 0.08 1.42 8.14 -51.93 -0.42 0.99 16
28 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16
29 H 0.17 1.61 6.00 -52.49 -0.31 1.30 16
30 H 0.16 1.02 8.06 -52.49 -0.42 0.60 16
31 H 0.04 0.77 8.06 -51.93 -0.42 0.35 16
32 H 0.03 0.51 8.14 -51.92 -0.42 0.09 16
LS Contribution 282.60 15.07 4.26 4.26
Total: -1.00 -29.11 282.60 -5.88 -34.99
By element:
Atomic # 1 Polarization: 0.04 SS G_CDS: -3.01 Total: -2.97 kcal
Atomic # 6 Polarization: 4.34 SS G_CDS: -1.83 Total: 2.51 kcal
Atomic # 7 Polarization: -47.58 SS G_CDS: -0.16 Total: -47.74 kcal
Atomic # 8 Polarization: -4.49 SS G_CDS: -0.19 Total: -4.68 kcal
Atomic # 9 Polarization: -2.71 SS G_CDS: 0.08 Total: -2.63 kcal
Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.27 kcal
Total LS contribution 4.26 Total: 4.26 kcal
Total: -29.11 -5.88 -34.99 kcal
The number of atoms in the molecule is 32
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001228534014.mol2 32
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -9.895 kcal
(2) G-P(sol) polarization free energy of solvation -29.110 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.005 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.877 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.987 kcal
(6) G-S(sol) free energy of system = (1) + (5) -44.883 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.32 seconds