Wall clock time and date at job start Mon Mar 30 2020 01:31:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86798 * 119.99981 * 2 1 4 4 H 1.48493 * 109.47326 * 89.99918 * 3 2 1 5 5 H 1.48506 * 109.46545 * 209.99668 * 3 2 1 6 6 H 1.48498 * 109.47210 * 329.99379 * 3 2 1 7 7 C 1.38812 * 119.99535 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99468 * 179.97438 * 7 2 1 9 9 N 1.36931 * 120.00429 * 0.02562 * 7 2 1 10 10 C 1.47434 * 125.64526 * 359.68990 * 9 7 2 11 11 C 1.55137 * 104.71970 * 155.81715 * 10 9 7 12 12 C 1.55158 * 101.48321 * 37.29493 * 11 10 9 13 13 H 1.08998 * 110.71948 * 82.69734 * 12 11 10 14 14 O 1.42904 * 110.71496 * 205.96593 * 12 11 10 15 15 C 1.36015 * 116.99425 * 204.97533 * 14 12 11 16 16 C 1.38997 * 120.45466 * 0.02562 * 15 14 12 17 17 C 1.38582 * 118.43493 * 179.97438 * 16 15 14 18 18 C 1.38441 * 119.24978 * 359.97438 * 17 16 15 19 19 F 1.35098 * 119.58310 * 180.02562 * 18 17 16 20 20 N 1.32088 * 120.84182 * 0.02671 * 18 17 16 21 21 C 1.32052 * 121.70518 * 359.68125 * 20 18 17 22 22 F 1.35099 * 119.66352 * 180.30944 * 21 20 18 23 23 C 1.47017 * 125.65325 * 179.97438 * 9 7 2 24 24 H 0.97005 * 119.99717 * 0.02562 * 1 2 3 25 25 H 1.08990 * 110.36592 * 274.74448 * 10 9 7 26 26 H 1.08998 * 110.36718 * 37.06988 * 10 9 7 27 27 H 1.09001 * 111.19036 * 279.19165 * 11 10 9 28 28 H 1.08996 * 110.93520 * 155.28964 * 11 10 9 29 29 H 1.08002 * 120.78346 * 359.97438 * 16 15 14 30 30 H 1.07999 * 120.37776 * 179.97438 * 17 16 15 31 31 H 1.08999 * 109.88360 * 300.44772 * 23 9 7 32 32 H 1.09008 * 109.87914 * 61.45235 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 1.4000 5 1 3.5478 1.4400 -0.7000 6 1 1.4478 2.6526 -0.7002 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 -0.1416 -2.5331 0.0065 11 6 -0.4019 -3.9325 -0.6105 12 6 0.7783 -4.7524 -0.0255 13 1 0.5459 -5.0977 0.9819 14 8 1.1000 -5.8538 -0.8773 15 6 1.7075 -6.9246 -0.2992 16 6 1.9916 -6.9236 1.0615 17 6 2.6110 -8.0368 1.6070 18 6 2.9244 -9.1068 0.7863 19 9 3.5277 -10.1956 1.3112 20 7 2.6410 -9.0766 -0.5034 21 6 2.0463 -8.0368 -1.0592 22 9 1.7701 -8.0525 -2.3816 23 6 1.9316 -3.7275 0.0005 24 1 -0.4850 0.8401 -0.0004 25 1 -0.5230 -2.4888 1.0265 26 1 -0.6020 -1.7575 -0.6056 27 1 -0.3525 -3.8986 -1.6989 28 1 -1.3592 -4.3331 -0.2772 29 1 1.7357 -6.0753 1.6790 30 1 2.8465 -8.0693 2.6605 31 1 2.5577 -3.8511 -0.8831 32 1 2.5308 -3.8632 0.9010 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001228534014.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:48 Heat of formation + Delta-G solvation = -63.191973 kcal Electronic energy + Delta-G solvation = -20219.914036 eV Core-core repulsion = 16624.979053 eV Total energy + Delta-G solvation = -3594.934983 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.092 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -50.19219 -50.12610 -41.77884 -39.96388 -37.99510 -34.35136 -33.66094 -31.54241 -30.69346 -29.11915 -26.64323 -25.24709 -24.64623 -22.18771 -21.88070 -19.93945 -19.41688 -19.23833 -18.83111 -17.85486 -17.24241 -16.93918 -16.69010 -16.44677 -16.06397 -15.79202 -15.41458 -15.06739 -14.61043 -14.34220 -14.30900 -13.93822 -13.62724 -13.57159 -13.12519 -12.94137 -12.67766 -12.28829 -12.04185 -11.93647 -11.80433 -11.42503 -11.29008 -11.06438 -10.76298 -9.48690 -8.93275 -7.79837 -5.24809 -0.42570 -0.28240 1.48996 1.49905 1.55368 1.59545 2.06406 2.14440 2.49469 2.78569 3.27457 3.31923 3.40945 3.63888 3.69513 3.87027 3.94877 3.99413 4.39697 4.55211 4.58553 4.63105 4.73105 4.83685 4.90041 4.98347 5.23542 5.45078 5.58283 5.76235 5.95428 6.12933 6.29079 7.08240 7.73781 8.34933 9.21905 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.034188 B = 0.004097 C = 0.003930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.799583 B = 6831.817374 C = 7122.491350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.060 4.060 3 Si 0.979 3.021 4 H -0.284 1.284 5 H -0.273 1.273 6 H -0.294 1.294 7 C -0.242 4.242 8 H 0.080 0.920 9 N -0.623 5.623 10 C 0.153 3.847 11 C -0.125 4.125 12 C 0.080 3.920 13 H 0.119 0.881 14 O -0.298 6.298 15 C 0.058 3.942 16 C -0.105 4.105 17 C -0.126 4.126 18 C 0.289 3.711 19 F -0.106 7.106 20 N -0.537 5.537 21 C 0.292 3.708 22 F -0.110 7.110 23 C 0.114 3.886 24 H 0.249 0.751 25 H 0.008 0.992 26 H 0.079 0.921 27 H 0.065 0.935 28 H 0.102 0.898 29 H 0.189 0.811 30 H 0.203 0.797 31 H 0.023 0.977 32 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.178 -15.270 5.078 16.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.253 4.253 3 Si 0.807 3.193 4 H -0.211 1.211 5 H -0.198 1.198 6 H -0.220 1.220 7 C -0.371 4.371 8 H 0.098 0.902 9 N -0.351 5.351 10 C 0.028 3.972 11 C -0.163 4.163 12 C 0.024 3.976 13 H 0.136 0.864 14 O -0.210 6.210 15 C 0.008 3.992 16 C -0.130 4.130 17 C -0.146 4.146 18 C 0.135 3.865 19 F -0.085 7.085 20 N -0.258 5.258 21 C 0.138 3.862 22 F -0.089 7.089 23 C -0.012 4.012 24 H 0.059 0.941 25 H 0.026 0.974 26 H 0.097 0.903 27 H 0.084 0.916 28 H 0.120 0.880 29 H 0.206 0.794 30 H 0.220 0.780 31 H 0.041 0.959 32 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 2.316 -15.761 4.318 16.505 hybrid contribution 0.318 1.344 0.053 1.382 sum 2.634 -14.416 4.371 15.293 Atomic orbital electron populations 1.69983 1.06082 1.25244 1.58228 1.25578 0.96622 1.00795 1.02333 0.85074 0.77555 0.79118 0.77537 1.21081 1.19763 1.22004 1.19413 0.91037 0.83544 1.43111 0.90184 1.44629 1.02824 1.00442 1.87184 1.21850 0.84027 0.93727 0.97567 1.23087 0.96997 0.95194 1.01041 1.23697 0.95679 0.83322 0.94893 0.86366 1.86295 1.72509 1.24070 1.38082 1.19865 0.97574 0.88403 0.93369 1.21957 0.98027 1.01032 0.92030 1.22083 0.98530 0.90263 1.03769 1.17678 0.97004 0.85540 0.86248 1.91655 1.80270 1.52408 1.84195 1.65979 1.16197 1.28371 1.15255 1.16709 1.00588 0.89439 0.79498 1.91635 1.90998 1.96184 1.30109 1.21839 0.94818 0.85437 0.99087 0.94110 0.97359 0.90266 0.91576 0.87973 0.79405 0.78018 0.95912 0.93568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -53.76 10.08 21.65 0.22 -53.54 16 2 C -0.06 -3.28 5.49 84.86 0.47 -2.82 16 3 Si 0.98 44.00 29.55 68.60 2.03 46.02 16 4 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 5 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 6 H -0.29 -13.30 7.11 99.48 0.71 -12.60 16 7 C -0.24 -13.03 10.27 84.03 0.86 -12.16 16 8 H 0.08 4.15 7.83 -2.91 -0.02 4.12 16 9 N -0.62 -30.22 3.39 -691.54 -2.35 -32.57 16 10 C 0.15 6.92 5.91 86.93 0.51 7.44 16 11 C -0.12 -4.24 6.82 32.07 0.22 -4.02 16 12 C 0.08 2.39 2.84 31.78 0.09 2.48 16 13 H 0.12 2.70 5.96 -2.39 -0.01 2.68 16 14 O -0.30 -8.90 9.74 -93.72 -0.91 -9.81 16 15 C 0.06 1.47 6.71 22.61 0.15 1.63 16 16 C -0.10 -1.88 9.11 22.53 0.21 -1.68 16 17 C -0.13 -1.87 10.08 22.40 0.23 -1.65 16 18 C 0.29 6.17 8.40 84.70 0.71 6.88 16 19 F -0.11 -2.20 17.29 44.97 0.78 -1.42 16 20 N -0.54 -14.74 10.38 -197.69 -2.05 -16.79 16 21 C 0.29 8.24 8.43 84.82 0.71 8.95 16 22 F -0.11 -3.42 17.14 44.97 0.77 -2.65 16 23 C 0.11 4.29 7.01 86.73 0.61 4.90 16 24 H 0.25 13.78 8.31 -92.70 -0.77 13.01 16 25 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 26 H 0.08 4.19 5.86 -2.39 -0.01 4.18 16 27 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 28 H 0.10 2.80 8.14 -2.39 -0.02 2.78 16 29 H 0.19 2.60 6.00 -2.91 -0.02 2.59 16 30 H 0.20 1.31 8.06 -2.91 -0.02 1.29 16 31 H 0.02 0.93 8.06 -2.39 -0.02 0.91 16 32 H 0.05 1.58 8.14 -2.38 -0.02 1.56 16 Total: -1.00 -64.79 282.60 4.41 -60.38 By element: Atomic # 1 Polarization: -0.74 SS G_CDS: 1.16 Total: 0.42 kcal Atomic # 6 Polarization: 5.19 SS G_CDS: 4.77 Total: 9.96 kcal Atomic # 7 Polarization: -98.72 SS G_CDS: -4.18 Total: -102.90 kcal Atomic # 8 Polarization: -8.90 SS G_CDS: -0.91 Total: -9.81 kcal Atomic # 9 Polarization: -5.62 SS G_CDS: 1.55 Total: -4.07 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.02 kcal Total: -64.79 4.41 -60.38 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228534014.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.810 kcal (2) G-P(sol) polarization free energy of solvation -64.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds