Wall clock time and date at job start Mon Mar 30 2020 01:31:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 119.99864 * 2 1 4 4 H 1.48497 * 109.47173 * 269.99694 * 3 2 1 5 5 H 1.48495 * 109.47238 * 30.00046 * 3 2 1 6 6 H 1.48507 * 109.47259 * 149.99763 * 3 2 1 7 7 C 1.37878 * 120.00160 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00149 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99980 * 180.02562 * 7 2 1 10 10 N 1.46900 * 109.47154 * 180.02562 * 9 7 2 11 11 C 1.47956 * 111.00069 * 170.00083 * 10 9 7 12 12 C 1.53939 * 86.18063 * 222.41375 * 11 10 9 13 13 O 1.42905 * 113.73287 * 138.07564 * 12 11 10 14 14 C 1.35773 * 116.99655 * 150.00157 * 13 12 11 15 15 N 1.32186 * 119.67434 * 359.73301 * 14 13 12 16 16 C 1.31983 * 121.70204 * 179.71246 * 15 14 13 17 17 C 1.38275 * 120.83778 * 0.55994 * 16 15 14 18 18 F 1.35092 * 120.37134 * 179.75001 * 17 16 15 19 19 C 1.38965 * 119.25517 * 359.72590 * 17 16 15 20 20 C 1.38568 * 118.44886 * 0.02562 * 19 17 16 21 21 F 1.35099 * 120.45404 * 179.97438 * 20 19 17 22 22 C 1.47960 * 111.00269 * 70.64012 * 10 9 7 23 23 H 0.96999 * 120.00036 * 0.02562 * 1 2 3 24 24 H 1.08998 * 109.47462 * 60.00252 * 9 7 2 25 25 H 1.09000 * 109.47361 * 299.99749 * 9 7 2 26 26 H 1.09000 * 113.75979 * 108.10287 * 11 10 9 27 27 H 1.08999 * 113.76272 * 336.73229 * 11 10 9 28 28 H 1.08998 * 113.73411 * 269.25823 * 12 11 10 29 29 H 1.07993 * 119.58393 * 180.28780 * 16 15 14 30 30 H 1.08004 * 120.77524 * 180.02562 * 19 17 16 31 31 H 1.08997 * 113.75772 * 23.26323 * 22 10 9 32 32 H 1.09007 * 113.75896 * 251.90161 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6526 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0014 9 6 3.5115 -1.1940 0.0011 10 7 4.0013 -2.5790 0.0010 11 6 5.4606 -2.6253 -0.2383 12 6 5.1658 -3.8134 -1.1717 13 8 5.9127 -3.7870 -2.3898 14 6 6.2170 -4.9846 -2.9523 15 7 5.8257 -6.1020 -2.3644 16 6 6.0946 -7.2874 -2.8788 17 6 6.8115 -7.4033 -4.0556 18 9 7.0857 -8.6215 -4.5711 19 6 7.2462 -6.2526 -4.7021 20 6 6.9426 -5.0238 -4.1381 21 9 7.3456 -3.8793 -4.7322 22 6 3.7468 -3.2313 -1.3024 23 1 -0.4850 0.8400 -0.0004 24 1 3.8746 -0.6800 0.8911 25 1 3.8752 -0.6804 -0.8888 26 1 6.0420 -2.8937 0.6438 27 1 5.8492 -1.7473 -0.7543 28 1 5.2002 -4.7821 -0.6732 29 1 5.7542 -8.1782 -2.3721 30 1 7.8075 -6.3145 -5.6227 31 1 3.6341 -2.5305 -2.1296 32 1 2.9588 -3.9838 -1.2706 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001229859248.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:34 Heat of formation + Delta-G solvation = -41.280362 kcal Electronic energy + Delta-G solvation = -19833.637342 eV Core-core repulsion = 16239.652517 eV Total energy + Delta-G solvation = -3593.984825 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.092 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -49.33294 -49.20380 -40.87798 -39.41222 -37.13398 -32.82240 -32.70022 -30.52539 -29.49503 -25.99514 -25.60946 -24.34943 -23.57842 -21.37763 -19.66052 -18.89844 -18.38293 -18.22130 -16.94148 -16.69461 -16.25646 -15.76144 -15.73810 -15.28226 -15.04489 -14.78589 -14.41854 -13.99015 -13.61732 -13.44719 -12.87760 -12.68575 -12.52660 -12.27455 -12.12817 -11.95929 -11.04427 -10.78039 -10.36814 -10.27700 -10.21568 -9.94571 -9.82387 -9.33730 -8.65335 -8.59301 -8.11972 -6.10439 -4.09388 0.39825 0.51163 2.63692 3.03671 3.25400 3.33237 3.34908 3.45829 3.68842 3.83336 4.19820 4.37495 4.50842 4.55139 4.73074 4.88044 5.15760 5.21478 5.26066 5.39381 5.58408 5.80427 5.91468 6.00438 6.22050 6.24799 6.40527 6.71247 7.03790 7.19430 7.24806 7.66069 7.70642 8.53155 8.96756 9.50140 11.02597 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.035685 B = 0.003791 C = 0.003651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.457075 B = 7384.257267 C = 7668.005015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.070 3.930 3 Si 0.876 3.124 4 H -0.276 1.276 5 H -0.284 1.284 6 H -0.266 1.266 7 C -0.515 4.515 8 H 0.080 0.920 9 C 0.131 3.869 10 N -0.460 5.460 11 C -0.001 4.001 12 C 0.047 3.953 13 O -0.284 6.284 14 C 0.303 3.697 15 N -0.486 5.486 16 C 0.114 3.886 17 C 0.030 3.970 18 F -0.125 7.125 19 C -0.111 4.111 20 C 0.057 3.943 21 F -0.114 7.114 22 C 0.015 3.985 23 H 0.265 0.735 24 H 0.035 0.965 25 H -0.006 1.006 26 H 0.092 0.908 27 H 0.073 0.927 28 H 0.125 0.875 29 H 0.180 0.820 30 H 0.165 0.835 31 H 0.078 0.922 32 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.221 -13.863 -8.581 22.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.132 4.132 3 Si 0.703 3.297 4 H -0.202 1.202 5 H -0.210 1.210 6 H -0.191 1.191 7 C -0.553 4.553 8 H 0.098 0.902 9 C 0.004 3.996 10 N -0.184 5.184 11 C -0.130 4.130 12 C -0.009 4.009 13 O -0.189 6.189 14 C 0.122 3.878 15 N -0.209 5.209 16 C -0.044 4.044 17 C 0.008 3.992 18 F -0.104 7.104 19 C -0.138 4.138 20 C 0.034 3.966 21 F -0.093 7.093 22 C -0.114 4.114 23 H 0.075 0.925 24 H 0.053 0.947 25 H 0.012 0.988 26 H 0.110 0.890 27 H 0.092 0.908 28 H 0.142 0.858 29 H 0.197 0.803 30 H 0.183 0.817 31 H 0.096 0.904 32 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 15.381 -13.622 -7.298 21.803 hybrid contribution 1.098 1.282 -1.603 2.327 sum 16.479 -12.340 -8.901 22.428 Atomic orbital electron populations 1.69889 1.06151 1.26976 1.50600 1.24904 0.94765 0.98922 0.94595 0.86847 0.80382 0.83900 0.78575 1.20223 1.21000 1.19102 1.20940 0.88411 0.94928 1.51040 0.90200 1.20699 0.97834 0.85165 0.95866 1.68529 1.02668 1.19049 1.28167 1.24322 0.94702 0.96479 0.97456 1.25106 0.91994 1.01613 0.82160 1.86490 1.69090 1.22928 1.40376 1.20025 0.91627 0.86722 0.89462 1.67507 1.22893 0.97499 1.32971 1.22685 0.94297 0.95595 0.91821 1.18230 1.04017 0.80704 0.96284 1.91541 1.92187 1.40245 1.86386 1.21469 1.01010 0.89397 1.01878 1.17330 1.03106 0.83047 0.93129 1.91576 1.88455 1.46753 1.82484 1.24213 0.94665 0.98906 0.93640 0.92546 0.94733 0.98797 0.88975 0.90849 0.85751 0.80321 0.81725 0.90417 0.89084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.50 13.96 55.43 0.77 -26.72 16 2 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 3 Si 0.88 21.45 27.47 -169.99 -4.67 16.78 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 6 H -0.27 -6.26 6.54 56.52 0.37 -5.89 16 7 C -0.52 -14.70 9.40 -34.44 -0.32 -15.03 16 8 H 0.08 2.48 8.05 -52.49 -0.42 2.06 16 9 C 0.13 3.19 3.65 -4.98 -0.02 3.17 16 10 N -0.46 -9.63 6.25 -239.98 -1.50 -11.13 16 11 C 0.00 -0.01 7.81 -2.77 -0.02 -0.03 16 12 C 0.05 0.75 4.37 -25.80 -0.11 0.64 16 13 O -0.28 -4.39 10.01 -19.03 -0.19 -4.58 16 14 C 0.30 4.03 7.49 -17.09 -0.13 3.90 16 15 N -0.49 -5.90 8.59 -13.22 -0.11 -6.01 16 16 C 0.11 1.03 11.16 -17.47 -0.20 0.84 16 17 C 0.03 0.26 7.34 -39.30 -0.29 -0.03 16 18 F -0.12 -1.07 17.28 2.25 0.04 -1.03 16 19 C -0.11 -0.97 10.14 -39.19 -0.40 -1.37 16 20 C 0.06 0.65 7.35 -39.15 -0.29 0.37 16 21 F -0.11 -1.44 17.13 2.25 0.04 -1.40 16 22 C 0.01 0.28 7.29 -2.77 -0.02 0.26 16 23 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 24 H 0.03 0.85 7.20 -51.93 -0.37 0.48 16 25 H -0.01 -0.14 7.12 -51.93 -0.37 -0.51 16 26 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 27 H 0.07 1.23 7.79 -51.93 -0.40 0.83 16 28 H 0.12 1.86 6.87 -51.93 -0.36 1.50 16 29 H 0.18 1.09 8.06 -52.49 -0.42 0.67 16 30 H 0.17 1.00 8.06 -52.48 -0.42 0.58 16 31 H 0.08 1.56 7.78 -51.93 -0.40 1.16 16 32 H 0.09 1.71 8.14 -51.93 -0.42 1.28 16 LS Contribution 288.42 15.07 4.35 4.35 Total: -1.00 -31.18 288.42 -6.36 -37.53 By element: Atomic # 1 Polarization: 0.75 SS G_CDS: -3.19 Total: -2.44 kcal Atomic # 6 Polarization: -3.45 SS G_CDS: -1.89 Total: -5.34 kcal Atomic # 7 Polarization: -43.03 SS G_CDS: -0.84 Total: -43.87 kcal Atomic # 8 Polarization: -4.39 SS G_CDS: -0.19 Total: -4.58 kcal Atomic # 9 Polarization: -2.51 SS G_CDS: 0.08 Total: -2.43 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -4.67 Total: 16.78 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -31.18 -6.36 -37.53 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229859248.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.750 kcal (2) G-P(sol) polarization free energy of solvation -31.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds