Wall clock time and date at job start Mon Mar 30 2020 01:31:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 119.99864 * 2 1 4 4 H 1.48497 * 109.47173 * 269.99694 * 3 2 1 5 5 H 1.48495 * 109.47238 * 30.00046 * 3 2 1 6 6 H 1.48507 * 109.47259 * 149.99763 * 3 2 1 7 7 C 1.37878 * 120.00160 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00149 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99980 * 180.02562 * 7 2 1 10 10 N 1.46900 * 109.47154 * 180.02562 * 9 7 2 11 11 C 1.47956 * 111.00069 * 170.00083 * 10 9 7 12 12 C 1.53939 * 86.18063 * 222.41375 * 11 10 9 13 13 O 1.42905 * 113.73287 * 138.07564 * 12 11 10 14 14 C 1.35773 * 116.99655 * 150.00157 * 13 12 11 15 15 N 1.32186 * 119.67434 * 359.73301 * 14 13 12 16 16 C 1.31983 * 121.70204 * 179.71246 * 15 14 13 17 17 C 1.38275 * 120.83778 * 0.55994 * 16 15 14 18 18 F 1.35092 * 120.37134 * 179.75001 * 17 16 15 19 19 C 1.38965 * 119.25517 * 359.72590 * 17 16 15 20 20 C 1.38568 * 118.44886 * 0.02562 * 19 17 16 21 21 F 1.35099 * 120.45404 * 179.97438 * 20 19 17 22 22 C 1.47960 * 111.00269 * 70.64012 * 10 9 7 23 23 H 0.96999 * 120.00036 * 0.02562 * 1 2 3 24 24 H 1.08998 * 109.47462 * 60.00252 * 9 7 2 25 25 H 1.09000 * 109.47361 * 299.99749 * 9 7 2 26 26 H 1.09000 * 113.75979 * 108.10287 * 11 10 9 27 27 H 1.08999 * 113.76272 * 336.73229 * 11 10 9 28 28 H 1.08998 * 113.73411 * 269.25823 * 12 11 10 29 29 H 1.07993 * 119.58393 * 180.28780 * 16 15 14 30 30 H 1.08004 * 120.77524 * 180.02562 * 19 17 16 31 31 H 1.08997 * 113.75772 * 23.26323 * 22 10 9 32 32 H 1.09007 * 113.75896 * 251.90161 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6526 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0014 9 6 3.5115 -1.1940 0.0011 10 7 4.0013 -2.5790 0.0010 11 6 5.4606 -2.6253 -0.2383 12 6 5.1658 -3.8134 -1.1717 13 8 5.9127 -3.7870 -2.3898 14 6 6.2170 -4.9846 -2.9523 15 7 5.8257 -6.1020 -2.3644 16 6 6.0946 -7.2874 -2.8788 17 6 6.8115 -7.4033 -4.0556 18 9 7.0857 -8.6215 -4.5711 19 6 7.2462 -6.2526 -4.7021 20 6 6.9426 -5.0238 -4.1381 21 9 7.3456 -3.8793 -4.7322 22 6 3.7468 -3.2313 -1.3024 23 1 -0.4850 0.8400 -0.0004 24 1 3.8746 -0.6800 0.8911 25 1 3.8752 -0.6804 -0.8888 26 1 6.0420 -2.8937 0.6438 27 1 5.8492 -1.7473 -0.7543 28 1 5.2002 -4.7821 -0.6732 29 1 5.7542 -8.1782 -2.3721 30 1 7.8075 -6.3145 -5.6227 31 1 3.6341 -2.5305 -2.1296 32 1 2.9588 -3.9838 -1.2706 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001229859248.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:34 Heat of formation + Delta-G solvation = -65.393454 kcal Electronic energy + Delta-G solvation = -19834.682964 eV Core-core repulsion = 16239.652517 eV Total energy + Delta-G solvation = -3595.030447 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.092 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -50.10866 -50.04326 -41.89829 -40.66601 -38.32552 -34.96434 -33.50388 -31.95082 -30.81332 -27.58685 -27.05466 -25.42409 -24.48485 -23.06426 -21.07470 -19.93122 -19.24490 -19.14554 -19.02302 -17.63949 -17.10072 -17.01535 -16.61081 -16.51279 -16.29131 -16.07916 -15.66816 -15.23358 -14.83723 -14.72678 -14.39341 -13.96396 -13.81963 -13.67298 -13.51684 -13.38985 -12.79942 -12.65965 -11.82793 -11.65889 -11.57566 -11.41473 -11.10932 -11.03874 -10.84359 -9.78571 -9.49481 -8.33181 -6.38508 -0.39420 -0.28789 1.33000 1.34693 1.45726 1.62677 2.21258 2.31184 2.63246 2.83429 2.98613 3.01756 3.09221 3.35575 3.49978 3.74548 3.99264 4.11523 4.24465 4.39158 4.40956 4.56451 4.59079 4.66796 4.73613 4.77691 4.90850 5.25350 5.33334 5.64857 5.88440 5.97956 6.38091 6.42209 6.67077 7.25468 8.83488 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.035685 B = 0.003791 C = 0.003651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.457075 B = 7384.257267 C = 7668.005015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C 0.010 3.990 3 Si 0.949 3.051 4 H -0.267 1.267 5 H -0.279 1.279 6 H -0.247 1.247 7 C -0.525 4.525 8 H 0.035 0.965 9 C 0.141 3.859 10 N -0.481 5.481 11 C 0.004 3.996 12 C 0.075 3.925 13 O -0.299 6.299 14 C 0.276 3.724 15 N -0.503 5.503 16 C 0.118 3.882 17 C 0.043 3.957 18 F -0.118 7.118 19 C -0.094 4.094 20 C 0.044 3.956 21 F -0.125 7.125 22 C 0.007 3.993 23 H 0.269 0.731 24 H 0.037 0.963 25 H -0.002 1.002 26 H 0.119 0.881 27 H 0.076 0.924 28 H 0.136 0.864 29 H 0.210 0.790 30 H 0.195 0.805 31 H 0.061 0.939 32 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.723 -14.540 -9.142 25.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.188 4.188 3 Si 0.772 3.228 4 H -0.192 1.192 5 H -0.204 1.204 6 H -0.170 1.170 7 C -0.563 4.563 8 H 0.054 0.946 9 C 0.013 3.987 10 N -0.205 5.205 11 C -0.125 4.125 12 C 0.018 3.982 13 O -0.206 6.206 14 C 0.096 3.904 15 N -0.225 5.225 16 C -0.040 4.040 17 C 0.021 3.979 18 F -0.097 7.097 19 C -0.121 4.121 20 C 0.022 3.978 21 F -0.103 7.103 22 C -0.123 4.123 23 H 0.077 0.923 24 H 0.055 0.945 25 H 0.016 0.984 26 H 0.137 0.863 27 H 0.094 0.906 28 H 0.154 0.846 29 H 0.227 0.773 30 H 0.212 0.788 31 H 0.079 0.921 32 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 17.906 -14.330 -7.867 24.246 hybrid contribution 0.307 1.241 -1.510 1.979 sum 18.214 -13.089 -9.378 24.310 Atomic orbital electron populations 1.70044 1.08177 1.28316 1.52036 1.25880 0.95656 1.03272 0.93997 0.85690 0.79565 0.78377 0.79215 1.19244 1.20393 1.17022 1.21177 0.90909 0.93427 1.50821 0.94624 1.20469 0.94844 0.87454 0.95888 1.68414 1.05742 1.16965 1.29390 1.24395 0.92142 0.97042 0.98890 1.24649 0.89501 1.01569 0.82473 1.86430 1.69332 1.24654 1.40158 1.20199 0.93312 0.86430 0.90471 1.67483 1.23399 0.98046 1.33610 1.23189 0.93392 0.95479 0.91919 1.18204 1.03042 0.80815 0.95834 1.91572 1.92013 1.39883 1.86238 1.21731 0.99882 0.88136 1.02331 1.17460 1.03751 0.83648 0.92982 1.91547 1.88669 1.47502 1.82601 1.24189 0.97095 0.98590 0.92383 0.92251 0.94464 0.98397 0.86291 0.90558 0.84643 0.77332 0.78791 0.92078 0.89927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.58 13.96 21.45 0.30 -59.28 16 2 C 0.01 0.58 5.47 84.66 0.46 1.04 16 3 Si 0.95 44.15 27.47 68.60 1.88 46.04 16 4 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 5 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 6 H -0.25 -10.63 6.54 99.48 0.65 -9.98 16 7 C -0.53 -30.91 9.40 25.60 0.24 -30.67 16 8 H 0.04 2.34 8.05 -2.91 -0.02 2.32 16 9 C 0.14 6.85 3.65 85.56 0.31 7.16 16 10 N -0.48 -20.17 6.25 -916.36 -5.73 -25.90 16 11 C 0.00 0.12 7.81 86.41 0.67 0.80 16 12 C 0.07 2.32 4.37 31.24 0.14 2.46 16 13 O -0.30 -9.13 10.01 -91.01 -0.91 -10.04 16 14 C 0.28 7.06 7.49 84.84 0.64 7.70 16 15 N -0.50 -11.40 8.59 -308.59 -2.65 -14.05 16 16 C 0.12 1.83 11.16 84.68 0.95 2.77 16 17 C 0.04 0.61 7.34 22.45 0.16 0.78 16 18 F -0.12 -1.60 17.28 44.97 0.78 -0.83 16 19 C -0.09 -1.39 10.14 22.52 0.23 -1.16 16 20 C 0.04 0.95 7.35 22.55 0.17 1.12 16 21 F -0.12 -3.03 17.13 44.97 0.77 -2.26 16 22 C 0.01 0.26 7.29 86.40 0.63 0.89 16 23 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 24 H 0.04 1.78 7.20 -2.39 -0.02 1.76 16 25 H 0.00 -0.08 7.12 -2.39 -0.02 -0.10 16 26 H 0.12 3.18 8.14 -2.39 -0.02 3.16 16 27 H 0.08 2.43 7.79 -2.39 -0.02 2.41 16 28 H 0.14 3.89 6.87 -2.39 -0.02 3.88 16 29 H 0.21 1.83 8.06 -2.91 -0.02 1.80 16 30 H 0.19 1.64 8.06 -2.91 -0.02 1.62 16 31 H 0.06 2.55 7.78 -2.39 -0.02 2.53 16 32 H 0.08 3.26 8.14 -2.38 -0.02 3.24 16 Total: -1.00 -69.22 288.42 0.13 -69.08 By element: Atomic # 1 Polarization: 3.27 SS G_CDS: 1.10 Total: 4.37 kcal Atomic # 6 Polarization: -11.73 SS G_CDS: 4.60 Total: -7.13 kcal Atomic # 7 Polarization: -91.16 SS G_CDS: -8.08 Total: -99.24 kcal Atomic # 8 Polarization: -9.13 SS G_CDS: -0.91 Total: -10.04 kcal Atomic # 9 Polarization: -4.64 SS G_CDS: 1.55 Total: -3.09 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 1.88 Total: 46.04 kcal Total: -69.22 0.13 -69.08 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229859248.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.690 kcal (2) G-P(sol) polarization free energy of solvation -69.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds