Wall clock time and date at job start Mon Mar 30 2020 01:31:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86801 * 119.99705 * 2 1 4 4 H 1.48497 * 109.47191 * 5.29856 * 3 2 1 5 5 H 1.48499 * 109.47350 * 245.29214 * 3 2 1 6 6 H 1.48503 * 109.46994 * 125.29395 * 3 2 1 7 7 C 1.38810 * 120.00259 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99904 * 345.60916 * 7 2 1 9 9 N 1.36931 * 120.00124 * 165.60610 * 7 2 1 10 10 C 1.47025 * 125.64960 * 348.98007 * 9 7 2 11 11 C 1.54317 * 107.27277 * 181.02200 * 10 9 7 12 12 C 1.55164 * 102.94423 * 22.18671 * 11 10 9 13 13 H 1.09000 * 111.00092 * 82.61496 * 12 11 10 14 14 O 1.42901 * 111.00278 * 206.42506 * 12 11 10 15 15 C 1.35772 * 116.99584 * 209.99939 * 14 12 11 16 16 N 1.32192 * 119.67356 * 0.02562 * 15 14 12 17 17 C 1.31979 * 121.69807 * 180.02562 * 16 15 14 18 18 C 1.38281 * 120.84123 * 0.02562 * 17 16 15 19 19 F 1.35100 * 120.36890 * 179.97438 * 18 17 16 20 20 C 1.38956 * 119.25911 * 359.97438 * 18 17 16 21 21 C 1.38575 * 118.44461 * 359.73267 * 20 18 17 22 22 F 1.35101 * 120.45202 * 180.28212 * 21 20 18 23 23 C 1.47424 * 125.65002 * 168.66454 * 9 7 2 24 24 H 0.97001 * 119.99278 * 174.92732 * 1 2 3 25 25 H 1.08997 * 109.87719 * 300.43423 * 10 9 7 26 26 H 1.08998 * 109.88510 * 61.59599 * 10 9 7 27 27 H 1.08999 * 110.72759 * 140.55366 * 11 10 9 28 28 H 1.09005 * 110.71764 * 263.82766 * 11 10 9 29 29 H 1.07994 * 119.58093 * 179.97438 * 17 16 15 30 30 H 1.07998 * 120.78039 * 179.97438 * 20 18 17 31 31 H 1.09001 * 110.36978 * 274.75543 * 23 9 7 32 32 H 1.09003 * 110.36379 * 37.07331 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2903 2.7435 0.1293 5 1 3.0045 1.7540 -1.2719 6 1 3.1982 1.6420 1.1428 7 6 2.0103 -1.2021 0.0005 8 1 1.4958 -2.1226 0.2334 9 7 3.3474 -1.2208 -0.2942 10 6 4.1190 -0.0976 -0.8462 11 6 5.5699 -0.5878 -1.0362 12 6 5.4088 -2.1293 -1.1113 13 1 5.1283 -2.4442 -2.1164 14 8 6.6018 -2.7902 -0.6847 15 6 6.8708 -3.9980 -1.2436 16 7 6.0404 -4.5042 -2.1390 17 6 6.2625 -5.6747 -2.7070 18 6 7.3813 -6.4195 -2.3820 19 9 7.5989 -7.6167 -2.9689 20 6 8.2792 -5.9228 -1.4450 21 6 8.0197 -4.6880 -0.8721 22 9 8.8685 -4.1640 0.0391 23 6 4.2531 -2.3685 -0.1046 24 1 -0.4849 -0.8368 -0.0743 25 1 3.7006 0.2030 -1.8067 26 1 4.0994 0.7424 -0.1518 27 1 5.9904 -0.1984 -1.9633 28 1 6.1870 -0.3057 -0.1831 29 1 5.5610 -6.0560 -3.4342 30 1 9.1607 -6.4841 -1.1726 31 1 4.6339 -2.3866 0.9165 32 1 3.7373 -3.3008 -0.3346 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001229863326.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:36 Heat of formation + Delta-G solvation = -44.646406 kcal Electronic energy + Delta-G solvation = -20281.989318 eV Core-core repulsion = 16687.858530 eV Total energy + Delta-G solvation = -3594.130787 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.092 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.29952 -49.18820 -40.78350 -38.67162 -36.67634 -32.66614 -32.55755 -30.45519 -29.44136 -28.20262 -24.88712 -23.91162 -23.34713 -21.12651 -20.47465 -18.85430 -18.35846 -18.34021 -17.47470 -16.69622 -16.22680 -15.72632 -15.71870 -15.41657 -14.87468 -14.65043 -14.43619 -13.86316 -13.62250 -13.34232 -12.90094 -12.76947 -12.61061 -12.28981 -12.13797 -11.47578 -11.12939 -10.72420 -10.45000 -10.23428 -10.20584 -9.98982 -9.35780 -9.02327 -8.76600 -8.55137 -7.09221 -6.33846 -3.26576 0.43160 0.54818 2.64514 3.08041 3.39451 3.47902 3.49088 3.69022 3.73344 3.87747 4.22588 4.57453 4.60250 4.88182 4.92461 5.02251 5.18755 5.22950 5.35332 5.41448 5.49810 5.68352 5.88467 6.01835 6.07935 6.29101 6.42890 6.47019 6.67131 7.09219 7.29598 7.61130 8.30182 9.00602 9.50561 10.16723 11.16964 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.034035 B = 0.004505 C = 0.004166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.475885 B = 6214.334162 C = 6719.450652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.020 4.020 3 Si 1.069 2.931 4 H -0.300 1.300 5 H -0.285 1.285 6 H -0.297 1.297 7 C -0.323 4.323 8 H 0.079 0.921 9 N -0.608 5.608 10 C 0.112 3.888 11 C -0.125 4.125 12 C 0.069 3.931 13 H 0.106 0.894 14 O -0.283 6.283 15 C 0.304 3.696 16 N -0.484 5.484 17 C 0.115 3.885 18 C 0.029 3.971 19 F -0.125 7.125 20 C -0.111 4.111 21 C 0.056 3.944 22 F -0.115 7.115 23 C 0.126 3.874 24 H 0.262 0.738 25 H 0.052 0.948 26 H 0.035 0.965 27 H 0.077 0.923 28 H 0.079 0.921 29 H 0.180 0.820 30 H 0.165 0.835 31 H 0.032 0.968 32 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.177 -11.094 -5.598 22.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.219 4.219 3 Si 0.903 3.097 4 H -0.228 1.228 5 H -0.213 1.213 6 H -0.226 1.226 7 C -0.450 4.450 8 H 0.097 0.903 9 N -0.337 5.337 10 C -0.012 4.012 11 C -0.163 4.163 12 C 0.012 3.988 13 H 0.124 0.876 14 O -0.188 6.188 15 C 0.122 3.878 16 N -0.206 5.206 17 C -0.043 4.043 18 C 0.007 3.993 19 F -0.104 7.104 20 C -0.138 4.138 21 C 0.034 3.966 22 F -0.093 7.093 23 C 0.000 4.000 24 H 0.072 0.928 25 H 0.070 0.930 26 H 0.053 0.947 27 H 0.096 0.904 28 H 0.098 0.902 29 H 0.197 0.803 30 H 0.183 0.817 31 H 0.050 0.950 32 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 17.306 -8.814 -5.507 20.187 hybrid contribution 1.028 -2.376 0.225 2.599 sum 18.334 -11.190 -5.283 22.119 Atomic orbital electron populations 1.70898 1.05655 1.29292 1.50945 1.25865 0.96473 1.00897 0.98684 0.83858 0.73242 0.76220 0.76349 1.22834 1.21269 1.22555 1.20180 0.81295 0.96236 1.47263 0.90277 1.44672 1.05758 1.08332 1.74954 1.22022 0.89227 0.92178 0.97796 1.22757 0.98411 0.92442 1.02716 1.23986 0.82186 0.91984 1.00597 0.87628 1.86353 1.44351 1.26648 1.61436 1.20012 0.89421 0.87871 0.90477 1.67577 1.29410 1.13663 1.09941 1.22709 0.94898 0.88813 0.97900 1.18238 0.97745 0.84788 0.98492 1.91542 1.94659 1.41871 1.82299 1.21447 1.01391 0.94500 0.96418 1.17296 0.90215 0.93709 0.95428 1.91568 1.68372 1.85893 1.63491 1.21860 0.89848 0.92660 0.95668 0.92798 0.92988 0.94737 0.90400 0.90189 0.80347 0.81725 0.95006 0.93000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.20 13.70 55.49 0.76 -28.44 16 2 C -0.02 -0.59 5.50 -17.43 -0.10 -0.68 16 3 Si 1.07 26.74 24.53 -169.99 -4.17 22.57 16 4 H -0.30 -7.65 7.11 56.52 0.40 -7.25 16 5 H -0.29 -6.44 5.43 56.52 0.31 -6.13 16 6 H -0.30 -7.19 6.84 56.52 0.39 -6.80 16 7 C -0.32 -9.34 10.56 -15.06 -0.16 -9.50 16 8 H 0.08 2.41 8.06 -52.49 -0.42 1.99 16 9 N -0.61 -15.14 3.32 -169.94 -0.56 -15.70 16 10 C 0.11 2.44 4.61 -3.07 -0.01 2.43 16 11 C -0.13 -2.14 6.68 -24.90 -0.17 -2.31 16 12 C 0.07 1.21 3.37 -24.46 -0.08 1.12 16 13 H 0.11 1.82 6.95 -51.93 -0.36 1.46 16 14 O -0.28 -4.56 9.80 -19.03 -0.19 -4.75 16 15 C 0.30 4.27 7.49 -17.09 -0.13 4.15 16 16 N -0.48 -6.50 8.62 -13.22 -0.11 -6.61 16 17 C 0.11 1.17 11.16 -17.47 -0.20 0.97 16 18 C 0.03 0.28 7.34 -39.30 -0.29 -0.01 16 19 F -0.12 -1.14 17.28 2.25 0.04 -1.10 16 20 C -0.11 -1.02 10.14 -39.19 -0.40 -1.42 16 21 C 0.06 0.67 7.35 -39.15 -0.29 0.38 16 22 F -0.11 -1.45 17.13 2.25 0.04 -1.41 16 23 C 0.13 2.65 6.97 -2.41 -0.02 2.63 16 24 H 0.26 8.16 8.73 -40.82 -0.36 7.80 16 25 H 0.05 1.16 6.79 -51.93 -0.35 0.80 16 26 H 0.04 0.79 3.82 -51.93 -0.20 0.59 16 27 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 28 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 29 H 0.18 1.33 8.06 -52.49 -0.42 0.90 16 30 H 0.17 1.05 8.06 -52.49 -0.42 0.62 16 31 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 LS Contribution 277.97 15.07 4.19 4.19 Total: -1.00 -32.03 277.97 -4.97 -37.00 By element: Atomic # 1 Polarization: -0.38 SS G_CDS: -3.13 Total: -3.51 kcal Atomic # 6 Polarization: -0.40 SS G_CDS: -1.83 Total: -2.23 kcal Atomic # 7 Polarization: -50.84 SS G_CDS: 0.08 Total: -50.75 kcal Atomic # 8 Polarization: -4.56 SS G_CDS: -0.19 Total: -4.75 kcal Atomic # 9 Polarization: -2.59 SS G_CDS: 0.08 Total: -2.51 kcal Atomic # 14 Polarization: 26.74 SS G_CDS: -4.17 Total: 22.57 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -32.03 -4.97 -37.00 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229863326.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.646 kcal (2) G-P(sol) polarization free energy of solvation -32.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds