Wall clock time and date at job start Mon Mar 30 2020 01:31:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86801 * 119.99705 * 2 1 4 4 H 1.48497 * 109.47191 * 5.29856 * 3 2 1 5 5 H 1.48499 * 109.47350 * 245.29214 * 3 2 1 6 6 H 1.48503 * 109.46994 * 125.29395 * 3 2 1 7 7 C 1.38810 * 120.00259 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99904 * 345.60916 * 7 2 1 9 9 N 1.36931 * 120.00124 * 165.60610 * 7 2 1 10 10 C 1.47025 * 125.64960 * 348.98007 * 9 7 2 11 11 C 1.54317 * 107.27277 * 181.02200 * 10 9 7 12 12 C 1.55164 * 102.94423 * 22.18671 * 11 10 9 13 13 H 1.09000 * 111.00092 * 82.61496 * 12 11 10 14 14 O 1.42901 * 111.00278 * 206.42506 * 12 11 10 15 15 C 1.35772 * 116.99584 * 209.99939 * 14 12 11 16 16 N 1.32192 * 119.67356 * 0.02562 * 15 14 12 17 17 C 1.31979 * 121.69807 * 180.02562 * 16 15 14 18 18 C 1.38281 * 120.84123 * 0.02562 * 17 16 15 19 19 F 1.35100 * 120.36890 * 179.97438 * 18 17 16 20 20 C 1.38956 * 119.25911 * 359.97438 * 18 17 16 21 21 C 1.38575 * 118.44461 * 359.73267 * 20 18 17 22 22 F 1.35101 * 120.45202 * 180.28212 * 21 20 18 23 23 C 1.47424 * 125.65002 * 168.66454 * 9 7 2 24 24 H 0.97001 * 119.99278 * 174.92732 * 1 2 3 25 25 H 1.08997 * 109.87719 * 300.43423 * 10 9 7 26 26 H 1.08998 * 109.88510 * 61.59599 * 10 9 7 27 27 H 1.08999 * 110.72759 * 140.55366 * 11 10 9 28 28 H 1.09005 * 110.71764 * 263.82766 * 11 10 9 29 29 H 1.07994 * 119.58093 * 179.97438 * 17 16 15 30 30 H 1.07998 * 120.78039 * 179.97438 * 20 18 17 31 31 H 1.09001 * 110.36978 * 274.75543 * 23 9 7 32 32 H 1.09003 * 110.36379 * 37.07331 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2903 2.7435 0.1293 5 1 3.0045 1.7540 -1.2719 6 1 3.1982 1.6420 1.1428 7 6 2.0103 -1.2021 0.0005 8 1 1.4958 -2.1226 0.2334 9 7 3.3474 -1.2208 -0.2942 10 6 4.1190 -0.0976 -0.8462 11 6 5.5699 -0.5878 -1.0362 12 6 5.4088 -2.1293 -1.1113 13 1 5.1283 -2.4442 -2.1164 14 8 6.6018 -2.7902 -0.6847 15 6 6.8708 -3.9980 -1.2436 16 7 6.0404 -4.5042 -2.1390 17 6 6.2625 -5.6747 -2.7070 18 6 7.3813 -6.4195 -2.3820 19 9 7.5989 -7.6167 -2.9689 20 6 8.2792 -5.9228 -1.4450 21 6 8.0197 -4.6880 -0.8721 22 9 8.8685 -4.1640 0.0391 23 6 4.2531 -2.3685 -0.1046 24 1 -0.4849 -0.8368 -0.0743 25 1 3.7006 0.2030 -1.8067 26 1 4.0994 0.7424 -0.1518 27 1 5.9904 -0.1984 -1.9633 28 1 6.1870 -0.3057 -0.1831 29 1 5.5610 -6.0560 -3.4342 30 1 9.1607 -6.4841 -1.1726 31 1 4.6339 -2.3866 0.9165 32 1 3.7373 -3.3008 -0.3346 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001229863326.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:36 Heat of formation + Delta-G solvation = -67.797071 kcal Electronic energy + Delta-G solvation = -20282.993206 eV Core-core repulsion = 16687.858530 eV Total energy + Delta-G solvation = -3595.134675 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.092 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -50.11351 -50.06366 -41.78937 -39.96044 -38.15942 -34.64237 -33.52431 -31.86000 -30.85697 -29.76152 -26.28989 -25.22042 -24.42137 -22.75541 -22.09661 -19.92030 -19.76103 -19.23735 -19.13856 -17.65693 -17.24806 -17.06555 -16.82662 -16.49946 -15.95157 -15.93482 -15.62027 -15.48318 -15.10050 -14.49091 -14.24723 -14.10214 -14.06221 -13.62111 -13.45020 -13.15672 -13.07548 -12.31577 -11.85692 -11.74051 -11.44915 -11.11924 -11.06307 -11.05045 -10.72859 -9.53426 -9.16794 -8.69281 -5.53794 -0.41755 -0.29905 1.40859 1.50209 1.56090 1.75073 2.19765 2.54409 2.59908 2.80928 3.00079 3.11080 3.25859 3.47179 3.53021 3.69872 3.77811 4.03216 4.11113 4.22709 4.33794 4.45223 4.60512 4.64122 4.75134 4.79851 4.85783 5.07590 5.24928 5.46960 5.94829 6.04911 6.37485 6.76485 7.35139 8.00861 8.83592 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.034035 B = 0.004505 C = 0.004166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.475885 B = 6214.334162 C = 6719.450652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.961 5.961 2 C -0.075 4.075 3 Si 1.108 2.892 4 H -0.310 1.310 5 H -0.243 1.243 6 H -0.284 1.284 7 C -0.317 4.317 8 H 0.045 0.955 9 N -0.629 5.629 10 C 0.101 3.899 11 C -0.113 4.113 12 C 0.089 3.911 13 H 0.107 0.893 14 O -0.292 6.292 15 C 0.275 3.725 16 N -0.508 5.508 17 C 0.114 3.886 18 C 0.044 3.956 19 F -0.118 7.118 20 C -0.093 4.093 21 C 0.050 3.950 22 F -0.121 7.121 23 C 0.123 3.877 24 H 0.248 0.752 25 H 0.050 0.950 26 H 0.034 0.966 27 H 0.114 0.886 28 H 0.092 0.908 29 H 0.204 0.796 30 H 0.198 0.802 31 H 0.028 0.972 32 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.268 -11.478 -6.771 25.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.605 5.605 2 C -0.268 4.268 3 Si 0.935 3.065 4 H -0.239 1.239 5 H -0.167 1.167 6 H -0.212 1.212 7 C -0.445 4.445 8 H 0.063 0.937 9 N -0.358 5.358 10 C -0.023 4.023 11 C -0.151 4.151 12 C 0.032 3.968 13 H 0.125 0.875 14 O -0.198 6.198 15 C 0.095 3.905 16 N -0.230 5.230 17 C -0.044 4.044 18 C 0.022 3.978 19 F -0.097 7.097 20 C -0.119 4.119 21 C 0.028 3.972 22 F -0.100 7.100 23 C -0.003 4.003 24 H 0.057 0.943 25 H 0.068 0.932 26 H 0.052 0.948 27 H 0.132 0.868 28 H 0.111 0.889 29 H 0.221 0.779 30 H 0.215 0.785 31 H 0.046 0.954 32 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 20.451 -9.248 -6.700 23.424 hybrid contribution 0.092 -2.540 0.571 2.605 sum 20.543 -11.788 -6.129 24.465 Atomic orbital electron populations 1.71005 1.06957 1.28517 1.53980 1.27216 0.96455 1.04548 0.98548 0.83442 0.72601 0.71741 0.78766 1.23932 1.16718 1.21223 1.20057 0.83550 0.94970 1.45931 0.93741 1.44708 1.05033 1.10764 1.75264 1.22208 0.91655 0.91302 0.97141 1.22734 0.95439 0.91723 1.05192 1.23538 0.81606 0.92641 0.99030 0.87498 1.86313 1.43240 1.27941 1.62305 1.20215 0.90737 0.87739 0.91803 1.67532 1.29904 1.15097 1.10440 1.23128 0.95627 0.87882 0.97736 1.18189 0.97186 0.84564 0.97816 1.91573 1.94544 1.41458 1.82115 1.21730 1.01963 0.93260 0.94957 1.17375 0.89703 0.94393 0.95761 1.91553 1.68438 1.86145 1.63819 1.21936 0.90702 0.90932 0.96735 0.94324 0.93188 0.94837 0.86758 0.88909 0.77925 0.78478 0.95422 0.94297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -62.55 13.70 21.65 0.30 -62.26 16 2 C -0.07 -4.52 5.50 84.86 0.47 -4.05 16 3 Si 1.11 53.43 24.53 68.60 1.68 55.11 16 4 H -0.31 -15.39 7.11 99.48 0.71 -14.68 16 5 H -0.24 -10.01 5.43 99.48 0.54 -9.47 16 6 H -0.28 -13.03 6.84 99.48 0.68 -12.35 16 7 C -0.32 -18.87 10.56 84.03 0.89 -17.98 16 8 H 0.04 2.87 8.06 -2.91 -0.02 2.85 16 9 N -0.63 -31.28 3.32 -691.58 -2.30 -33.57 16 10 C 0.10 4.16 4.61 86.73 0.40 4.56 16 11 C -0.11 -3.52 6.68 31.78 0.21 -3.30 16 12 C 0.09 2.97 3.37 32.06 0.11 3.08 16 13 H 0.11 3.53 6.95 -2.39 -0.02 3.51 16 14 O -0.29 -8.98 9.80 -91.00 -0.89 -9.87 16 15 C 0.28 7.33 7.49 84.84 0.64 7.97 16 16 N -0.51 -12.85 8.62 -308.58 -2.66 -15.51 16 17 C 0.11 2.04 11.16 84.68 0.95 2.99 16 18 C 0.04 0.69 7.34 22.45 0.16 0.86 16 19 F -0.12 -1.74 17.28 44.97 0.78 -0.97 16 20 C -0.09 -1.40 10.14 22.52 0.23 -1.17 16 21 C 0.05 1.09 7.35 22.55 0.17 1.25 16 22 F -0.12 -2.83 17.13 44.97 0.77 -2.06 16 23 C 0.12 5.17 6.97 86.93 0.61 5.77 16 24 H 0.25 16.22 8.73 -92.71 -0.81 15.41 16 25 H 0.05 2.08 6.79 -2.39 -0.02 2.07 16 26 H 0.03 1.43 3.82 -2.39 -0.01 1.43 16 27 H 0.11 2.76 8.14 -2.39 -0.02 2.74 16 28 H 0.09 2.67 8.14 -2.38 -0.02 2.65 16 29 H 0.20 2.47 8.06 -2.91 -0.02 2.44 16 30 H 0.20 1.63 8.06 -2.91 -0.02 1.61 16 31 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 Total: -1.00 -71.54 277.97 3.43 -68.11 By element: Atomic # 1 Polarization: 0.12 SS G_CDS: 0.93 Total: 1.05 kcal Atomic # 6 Polarization: -4.86 SS G_CDS: 4.82 Total: -0.04 kcal Atomic # 7 Polarization: -106.69 SS G_CDS: -4.66 Total: -111.35 kcal Atomic # 8 Polarization: -8.98 SS G_CDS: -0.89 Total: -9.87 kcal Atomic # 9 Polarization: -4.57 SS G_CDS: 1.55 Total: -3.02 kcal Atomic # 14 Polarization: 53.43 SS G_CDS: 1.68 Total: 55.11 kcal Total: -71.54 3.43 -68.11 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229863326.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.316 kcal (2) G-P(sol) polarization free energy of solvation -71.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds