Wall clock time and date at job start Mon Mar 30 2020 01:24:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35740 * 116.99806 * 2 1 4 4 C 1.39318 * 120.84047 * 359.97241 * 3 2 1 5 5 C 1.37922 * 119.12366 * 180.02562 * 4 3 2 6 6 N 1.31997 * 120.83850 * 0.02953 * 5 4 3 7 7 C 1.32038 * 121.84712 * 359.94818 * 6 5 4 8 8 Cl 1.73594 * 119.60517 * 180.02562 * 7 6 5 9 9 C 1.38165 * 120.78789 * 0.05109 * 7 6 5 10 10 C 1.50696 * 120.45893 * 180.25477 * 9 7 6 11 11 N 1.46904 * 109.47161 * 269.71772 * 10 9 7 12 12 C 1.46908 * 110.99678 * 293.95850 * 11 10 9 13 13 C 1.46892 * 111.00430 * 170.00036 * 11 10 9 14 14 C 1.50706 * 109.47504 * 190.00022 * 13 11 10 15 15 H 1.08004 * 119.99482 * 359.97438 * 14 13 11 16 16 C 1.37871 * 120.00375 * 180.02562 * 14 13 11 17 17 N 1.31522 * 119.99780 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 120.00206 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.47225 * 89.99571 * 18 16 14 20 20 H 1.48498 * 109.47353 * 209.99909 * 18 16 14 21 21 H 1.48505 * 109.46988 * 329.99738 * 18 16 14 22 22 H 1.08996 * 109.47268 * 300.00085 * 1 2 3 23 23 H 1.08999 * 109.47407 * 60.00256 * 1 2 3 24 24 H 1.09005 * 109.46941 * 180.02562 * 1 2 3 25 25 H 1.08000 * 120.43807 * 0.05026 * 4 3 2 26 26 H 1.08004 * 119.57785 * 180.02562 * 5 4 3 27 27 H 1.08998 * 109.47388 * 29.71497 * 10 9 7 28 28 H 1.08998 * 109.47260 * 149.72036 * 10 9 7 29 29 H 1.08991 * 109.47670 * 59.99694 * 12 11 10 30 30 H 1.08996 * 109.46882 * 179.97438 * 12 11 10 31 31 H 1.09005 * 109.46756 * 299.99103 * 12 11 10 32 32 H 1.09001 * 109.47363 * 310.00030 * 13 11 10 33 33 H 1.09002 * 109.47313 * 69.99845 * 13 11 10 34 34 H 0.97000 * 119.99647 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2095 0.0000 4 6 1.3036 2.3889 -0.0006 5 6 1.9662 3.5985 -0.0011 6 7 3.2853 3.6474 -0.0016 7 6 4.0231 2.5524 -0.0007 8 17 5.7540 2.6845 -0.0008 9 6 3.4339 1.3026 -0.0001 10 6 4.2831 0.0578 0.0067 11 7 4.5595 -0.3541 -1.3761 12 6 3.3273 -0.7752 -2.0562 13 6 5.5726 -1.4170 -1.4163 14 6 6.0086 -1.6418 -2.8413 15 1 5.5759 -1.0541 -3.6375 16 6 6.9589 -2.5984 -3.1288 17 7 7.4854 -3.3144 -2.1593 18 14 7.4998 -2.8765 -4.8950 19 1 8.6535 -1.9940 -5.2042 20 1 7.9004 -4.2954 -5.0725 21 1 6.3755 -2.5611 -5.8125 22 1 -0.3633 0.5138 0.8899 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 0.2241 2.3564 -0.0002 26 1 1.3986 4.5173 -0.0011 27 1 5.2229 0.2618 0.5197 28 1 3.7525 -0.7412 0.5246 29 1 2.6201 0.0540 -2.0732 30 1 3.5604 -1.0744 -3.0780 31 1 2.8871 -1.6173 -1.5221 32 1 6.4329 -1.1220 -0.8155 33 1 5.1489 -2.3382 -1.0164 34 1 8.1543 -3.9871 -2.3615 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001232150906.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:33 Heat of formation + Delta-G solvation = 0.716374 kcal Electronic energy + Delta-G solvation = -18701.920471 eV Core-core repulsion = 15661.553442 eV Total energy + Delta-G solvation = -3040.367029 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.088 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.81919 -38.34183 -36.61390 -36.21592 -32.87600 -31.66284 -31.09572 -27.83679 -27.24145 -26.59941 -24.18307 -22.90717 -21.98467 -20.16456 -18.45728 -17.40143 -16.38346 -16.14221 -15.38265 -15.27980 -14.77798 -14.53277 -14.31384 -13.92869 -13.73474 -13.59452 -12.80483 -12.23282 -11.93519 -11.84787 -11.60813 -11.34895 -11.25822 -11.15398 -10.85992 -10.64761 -10.51750 -10.39403 -9.86295 -9.62788 -9.18516 -8.98279 -8.71546 -8.37846 -7.17737 -5.98048 -3.98657 0.93555 1.24738 2.01040 3.08721 3.35583 3.41203 3.44839 3.63547 4.43217 4.48095 4.64896 4.74014 4.92449 4.94661 4.95913 5.22365 5.27796 5.38120 5.45722 5.54253 5.85856 6.09083 6.18611 6.26464 6.36341 6.49265 6.82088 7.07186 7.33298 7.39245 7.78446 7.84474 8.12676 8.25104 8.58913 9.08741 9.64996 11.12902 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.021089 B = 0.005746 C = 0.004920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.373070 B = 4871.873567 C = 5690.088470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.296 6.296 3 C 0.183 3.817 4 C -0.265 4.265 5 C 0.143 3.857 6 N -0.505 5.505 7 C 0.219 3.781 8 Cl -0.008 7.008 9 C -0.129 4.129 10 C 0.098 3.902 11 N -0.529 5.529 12 C 0.045 3.955 13 C 0.195 3.805 14 C -0.503 4.503 15 H 0.063 0.937 16 C 0.055 3.945 17 N -0.899 5.899 18 Si 0.897 3.103 19 H -0.280 1.280 20 H -0.288 1.288 21 H -0.274 1.274 22 H 0.056 0.944 23 H 0.058 0.942 24 H 0.104 0.896 25 H 0.142 0.858 26 H 0.163 0.837 27 H 0.085 0.915 28 H 0.041 0.959 29 H 0.037 0.963 30 H 0.071 0.929 31 H 0.015 0.985 32 H 0.031 0.969 33 H -0.009 1.009 34 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.645 10.081 6.480 18.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.207 6.207 3 C 0.128 3.872 4 C -0.287 4.287 5 C -0.014 4.014 6 N -0.219 5.219 7 C 0.056 3.944 8 Cl 0.021 6.979 9 C -0.134 4.134 10 C -0.031 4.031 11 N -0.254 5.254 12 C -0.104 4.104 13 C 0.070 3.930 14 C -0.542 4.542 15 H 0.081 0.919 16 C -0.146 4.146 17 N -0.539 5.539 18 Si 0.725 3.275 19 H -0.206 1.206 20 H -0.214 1.214 21 H -0.199 1.199 22 H 0.075 0.925 23 H 0.077 0.923 24 H 0.122 0.878 25 H 0.159 0.841 26 H 0.180 0.820 27 H 0.103 0.897 28 H 0.059 0.941 29 H 0.056 0.944 30 H 0.089 0.911 31 H 0.033 0.967 32 H 0.049 0.951 33 H 0.009 0.991 34 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -13.668 10.896 6.255 18.565 hybrid contribution -0.576 -1.539 -0.520 1.723 sum -14.243 9.357 5.735 17.981 Atomic orbital electron populations 1.23147 0.78006 1.04460 1.01399 1.86206 1.21529 1.25623 1.87314 1.18972 0.91355 0.84865 0.91971 1.22194 1.01553 0.93040 1.11879 1.22324 0.88703 0.97169 0.93218 1.67111 1.07239 1.31209 1.16374 1.21244 0.88266 0.88355 0.96511 1.98426 1.05373 1.98131 1.95964 1.20013 0.91273 0.96560 1.05540 1.20870 0.97561 0.91451 0.93192 1.62178 1.09846 1.42208 1.11134 1.22179 0.91126 0.97036 1.00060 1.19733 0.89015 0.86396 0.97875 1.21147 1.21925 1.18394 0.92720 0.91901 1.24972 0.96373 0.95931 0.97328 1.69965 1.28828 1.23558 1.31562 0.86512 0.78988 0.77123 0.84857 1.20628 1.21386 1.19933 0.92516 0.92306 0.87800 0.84058 0.81957 0.89671 0.94061 0.94377 0.91056 0.96658 0.95068 0.99072 0.92994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.84 101.05 0.99 1.20 16 2 O -0.30 -4.00 8.08 -18.93 -0.15 -4.15 16 3 C 0.18 2.62 5.49 -38.83 -0.21 2.40 16 4 C -0.27 -2.99 9.11 -39.30 -0.36 -3.35 16 5 C 0.14 1.69 11.17 -17.60 -0.20 1.49 16 6 N -0.50 -7.74 10.34 -10.43 -0.11 -7.84 16 7 C 0.22 3.69 7.27 -17.49 -0.13 3.57 16 8 Cl -0.01 -0.13 27.45 -51.86 -1.42 -1.56 16 9 C -0.13 -2.19 4.90 -104.30 -0.51 -2.70 16 10 C 0.10 1.88 4.57 -4.98 -0.02 1.86 16 11 N -0.53 -11.85 4.74 -245.82 -1.17 -13.01 16 12 C 0.04 0.92 8.19 60.07 0.49 1.41 16 13 C 0.19 5.15 4.72 -4.98 -0.02 5.13 16 14 C -0.50 -14.34 8.46 -34.44 -0.29 -14.63 16 15 H 0.06 1.79 7.12 -52.48 -0.37 1.41 16 16 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 17 N -0.90 -26.97 13.29 55.43 0.74 -26.23 16 18 Si 0.90 21.97 29.54 -169.99 -5.02 16.95 16 19 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 20 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 21 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 22 H 0.06 0.37 7.71 -51.93 -0.40 -0.03 16 23 H 0.06 0.42 7.71 -51.93 -0.40 0.02 16 24 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.14 1.09 6.46 -52.49 -0.34 0.75 16 26 H 0.16 1.29 8.06 -52.48 -0.42 0.86 16 27 H 0.09 1.64 6.70 -51.93 -0.35 1.30 16 28 H 0.04 0.79 7.60 -51.93 -0.39 0.40 16 29 H 0.04 0.71 5.85 -51.93 -0.30 0.40 16 30 H 0.07 1.56 6.76 -51.93 -0.35 1.21 16 31 H 0.01 0.31 8.06 -51.93 -0.42 -0.11 16 32 H 0.03 0.88 7.93 -51.93 -0.41 0.47 16 33 H -0.01 -0.24 8.12 -51.93 -0.42 -0.66 16 34 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 298.46 15.07 4.50 4.50 Total: -1.00 -32.17 298.46 -7.14 -39.31 By element: Atomic # 1 Polarization: -1.67 SS G_CDS: -4.14 Total: -5.81 kcal Atomic # 6 Polarization: -1.78 SS G_CDS: -0.35 Total: -2.14 kcal Atomic # 7 Polarization: -46.55 SS G_CDS: -0.54 Total: -47.09 kcal Atomic # 8 Polarization: -4.00 SS G_CDS: -0.15 Total: -4.15 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Atomic # 17 Polarization: -0.13 SS G_CDS: -1.42 Total: -1.56 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -32.17 -7.14 -39.31 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232150906.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.023 kcal (2) G-P(sol) polarization free energy of solvation -32.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.307 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds