Wall clock time and date at job start Mon Mar 30 2020 01:24:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35740 * 116.99806 * 2 1 4 4 C 1.39318 * 120.84047 * 359.97241 * 3 2 1 5 5 C 1.37922 * 119.12366 * 180.02562 * 4 3 2 6 6 N 1.31997 * 120.83850 * 0.02953 * 5 4 3 7 7 C 1.32038 * 121.84712 * 359.94818 * 6 5 4 8 8 Cl 1.73594 * 119.60517 * 180.02562 * 7 6 5 9 9 C 1.38165 * 120.78789 * 0.05109 * 7 6 5 10 10 C 1.50696 * 120.45893 * 180.25477 * 9 7 6 11 11 N 1.46904 * 109.47161 * 269.71772 * 10 9 7 12 12 C 1.46908 * 110.99678 * 293.95850 * 11 10 9 13 13 C 1.46892 * 111.00430 * 170.00036 * 11 10 9 14 14 C 1.50706 * 109.47504 * 190.00022 * 13 11 10 15 15 H 1.08004 * 119.99482 * 359.97438 * 14 13 11 16 16 C 1.37871 * 120.00375 * 180.02562 * 14 13 11 17 17 N 1.31522 * 119.99780 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 120.00206 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.47225 * 89.99571 * 18 16 14 20 20 H 1.48498 * 109.47353 * 209.99909 * 18 16 14 21 21 H 1.48505 * 109.46988 * 329.99738 * 18 16 14 22 22 H 1.08996 * 109.47268 * 300.00085 * 1 2 3 23 23 H 1.08999 * 109.47407 * 60.00256 * 1 2 3 24 24 H 1.09005 * 109.46941 * 180.02562 * 1 2 3 25 25 H 1.08000 * 120.43807 * 0.05026 * 4 3 2 26 26 H 1.08004 * 119.57785 * 180.02562 * 5 4 3 27 27 H 1.08998 * 109.47388 * 29.71497 * 10 9 7 28 28 H 1.08998 * 109.47260 * 149.72036 * 10 9 7 29 29 H 1.08991 * 109.47670 * 59.99694 * 12 11 10 30 30 H 1.08996 * 109.46882 * 179.97438 * 12 11 10 31 31 H 1.09005 * 109.46756 * 299.99103 * 12 11 10 32 32 H 1.09001 * 109.47363 * 310.00030 * 13 11 10 33 33 H 1.09002 * 109.47313 * 69.99845 * 13 11 10 34 34 H 0.97000 * 119.99647 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2095 0.0000 4 6 1.3036 2.3889 -0.0006 5 6 1.9662 3.5985 -0.0011 6 7 3.2853 3.6474 -0.0016 7 6 4.0231 2.5524 -0.0007 8 17 5.7540 2.6845 -0.0008 9 6 3.4339 1.3026 -0.0001 10 6 4.2831 0.0578 0.0067 11 7 4.5595 -0.3541 -1.3761 12 6 3.3273 -0.7752 -2.0562 13 6 5.5726 -1.4170 -1.4163 14 6 6.0086 -1.6418 -2.8413 15 1 5.5759 -1.0541 -3.6375 16 6 6.9589 -2.5984 -3.1288 17 7 7.4854 -3.3144 -2.1593 18 14 7.4998 -2.8765 -4.8950 19 1 8.6535 -1.9940 -5.2042 20 1 7.9004 -4.2954 -5.0725 21 1 6.3755 -2.5611 -5.8125 22 1 -0.3633 0.5138 0.8899 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 0.2241 2.3564 -0.0002 26 1 1.3986 4.5173 -0.0011 27 1 5.2229 0.2618 0.5197 28 1 3.7525 -0.7412 0.5246 29 1 2.6201 0.0540 -2.0732 30 1 3.5604 -1.0744 -3.0780 31 1 2.8871 -1.6173 -1.5221 32 1 6.4329 -1.1220 -0.8155 33 1 5.1489 -2.3382 -1.0164 34 1 8.1543 -3.9871 -2.3615 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001232150906.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:33 Heat of formation + Delta-G solvation = -22.145528 kcal Electronic energy + Delta-G solvation = -18702.911838 eV Core-core repulsion = 15661.553442 eV Total energy + Delta-G solvation = -3041.358396 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.088 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.87685 -39.33371 -38.28040 -37.50323 -34.85861 -33.13732 -32.12920 -29.25922 -28.66372 -28.01373 -25.92427 -23.93298 -23.50482 -21.88568 -19.42887 -18.55594 -18.42671 -17.23514 -16.77245 -16.44925 -16.27992 -15.82128 -15.62266 -15.45323 -15.08394 -15.01042 -14.19975 -13.79174 -13.53433 -13.16124 -12.95634 -12.87429 -12.67573 -12.57918 -12.40969 -12.29329 -12.17513 -12.05216 -11.72607 -11.34087 -10.71596 -10.60317 -9.98311 -9.90279 -9.00436 -8.18726 -6.28469 -0.14269 0.18506 0.82958 1.41147 1.43321 1.53901 2.19688 2.40850 2.57067 3.13666 3.36875 3.54057 3.64444 3.84475 3.87071 4.27765 4.34666 4.35923 4.40843 4.54337 4.66002 4.71911 4.76144 4.84560 4.94411 5.07430 5.19478 5.29126 5.33197 5.65451 6.04852 6.17586 6.32844 6.59186 6.73833 6.86728 7.40631 8.92445 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.021089 B = 0.005746 C = 0.004920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.373070 B = 4871.873567 C = 5690.088470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.322 6.322 3 C 0.181 3.819 4 C -0.247 4.247 5 C 0.150 3.850 6 N -0.525 5.525 7 C 0.207 3.793 8 Cl -0.030 7.030 9 C -0.158 4.158 10 C 0.106 3.894 11 N -0.536 5.536 12 C 0.057 3.943 13 C 0.212 3.788 14 C -0.520 4.520 15 H 0.061 0.939 16 C 0.002 3.998 17 N -0.934 5.934 18 Si 0.969 3.031 19 H -0.274 1.274 20 H -0.281 1.281 21 H -0.264 1.264 22 H 0.080 0.920 23 H 0.075 0.925 24 H 0.115 0.885 25 H 0.187 0.813 26 H 0.208 0.792 27 H 0.073 0.927 28 H 0.036 0.964 29 H 0.061 0.939 30 H 0.053 0.947 31 H 0.014 0.986 32 H 0.004 0.996 33 H -0.036 1.036 34 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.302 11.338 5.633 21.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.233 6.233 3 C 0.126 3.874 4 C -0.267 4.267 5 C -0.007 4.007 6 N -0.240 5.240 7 C 0.044 3.956 8 Cl -0.001 7.001 9 C -0.163 4.163 10 C -0.022 4.022 11 N -0.260 5.260 12 C -0.092 4.092 13 C 0.085 3.915 14 C -0.559 4.559 15 H 0.079 0.921 16 C -0.195 4.195 17 N -0.575 5.575 18 Si 0.793 3.207 19 H -0.200 1.200 20 H -0.206 1.206 21 H -0.189 1.189 22 H 0.098 0.902 23 H 0.094 0.906 24 H 0.133 0.867 25 H 0.204 0.796 26 H 0.225 0.775 27 H 0.091 0.909 28 H 0.055 0.945 29 H 0.080 0.920 30 H 0.072 0.928 31 H 0.033 0.967 32 H 0.022 0.978 33 H -0.019 1.019 34 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -16.358 12.165 5.417 21.093 hybrid contribution 0.069 -1.886 -0.177 1.895 sum -16.289 10.280 5.240 19.962 Atomic orbital electron populations 1.23526 0.75210 1.06023 1.03305 1.86181 1.24443 1.25600 1.87029 1.19090 0.90549 0.86349 0.91421 1.22620 1.03528 0.91320 1.09232 1.23168 0.87583 0.99276 0.90661 1.67148 1.08975 1.30491 1.17394 1.21209 0.87672 0.88942 0.97778 1.98409 1.07330 1.98189 1.96175 1.19789 0.92540 0.95091 1.08876 1.20705 0.97687 0.92784 0.91021 1.62075 1.10109 1.40241 1.13597 1.22061 0.90614 0.97847 0.98635 1.19358 0.89209 0.86335 0.96549 1.21421 1.22344 1.18679 0.93412 0.92076 1.25888 0.96229 0.95454 1.01971 1.70092 1.29336 1.24095 1.33944 0.85394 0.78732 0.77264 0.79284 1.20005 1.20612 1.18868 0.90197 0.90606 0.86701 0.79630 0.77500 0.90885 0.94546 0.92021 0.92787 0.96744 0.97762 1.01883 0.92695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.17 9.84 113.37 1.12 1.28 16 2 O -0.32 -7.98 8.08 -90.64 -0.73 -8.71 16 3 C 0.18 4.76 5.49 22.76 0.12 4.89 16 4 C -0.25 -4.47 9.11 22.45 0.20 -4.26 16 5 C 0.15 2.92 11.17 84.59 0.95 3.87 16 6 N -0.52 -15.11 10.34 -186.93 -1.93 -17.04 16 7 C 0.21 6.91 7.27 84.64 0.61 7.52 16 8 Cl -0.03 -1.05 27.45 -2.72 -0.07 -1.13 16 9 C -0.16 -5.31 4.90 -19.66 -0.10 -5.41 16 10 C 0.11 4.25 4.57 85.55 0.39 4.64 16 11 N -0.54 -24.77 4.74 -931.65 -4.42 -29.19 16 12 C 0.06 2.34 8.19 127.69 1.05 3.39 16 13 C 0.21 11.76 4.72 85.56 0.40 12.16 16 14 C -0.52 -30.41 8.46 25.60 0.22 -30.19 16 15 H 0.06 3.52 7.12 -2.91 -0.02 3.50 16 16 C 0.00 0.14 5.46 84.65 0.46 0.61 16 17 N -0.93 -57.33 13.29 21.45 0.28 -57.04 16 18 Si 0.97 45.30 29.54 68.60 2.03 47.33 16 19 H -0.27 -12.53 7.11 99.48 0.71 -11.83 16 20 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 21 H -0.26 -11.85 7.11 99.48 0.71 -11.14 16 22 H 0.08 0.67 7.71 -2.39 -0.02 0.65 16 23 H 0.08 0.73 7.71 -2.39 -0.02 0.71 16 24 H 0.11 1.22 8.14 -2.38 -0.02 1.20 16 25 H 0.19 1.67 6.46 -2.91 -0.02 1.65 16 26 H 0.21 2.09 8.06 -2.91 -0.02 2.06 16 27 H 0.07 3.02 6.70 -2.39 -0.02 3.00 16 28 H 0.04 1.46 7.60 -2.39 -0.02 1.44 16 29 H 0.06 2.23 5.85 -2.39 -0.01 2.22 16 30 H 0.05 2.39 6.76 -2.39 -0.02 2.37 16 31 H 0.01 0.58 8.06 -2.38 -0.02 0.56 16 32 H 0.00 0.26 7.93 -2.39 -0.02 0.24 16 33 H -0.04 -2.18 8.12 -2.39 -0.02 -2.20 16 34 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 Total: -1.00 -72.12 298.46 1.69 -70.43 By element: Atomic # 1 Polarization: -4.25 SS G_CDS: 1.11 Total: -3.14 kcal Atomic # 6 Polarization: -6.94 SS G_CDS: 5.43 Total: -1.51 kcal Atomic # 7 Polarization: -97.20 SS G_CDS: -6.07 Total: -103.27 kcal Atomic # 8 Polarization: -7.98 SS G_CDS: -0.73 Total: -8.71 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.33 kcal Atomic # 17 Polarization: -1.05 SS G_CDS: -0.07 Total: -1.13 kcal Total: -72.12 1.69 -70.43 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232150906.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.284 kcal (2) G-P(sol) polarization free energy of solvation -72.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds