Wall clock time and date at job start Mon Mar 30 2020 01:22:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42897 * 109.47186 * 2 1 4 4 C 1.35697 * 117.00059 * 180.02562 * 3 2 1 5 5 N 1.32260 * 119.66916 * 359.72343 * 4 3 2 6 6 C 1.31945 * 121.65828 * 179.71082 * 5 4 3 7 7 C 1.38192 * 120.81645 * 0.56937 * 6 5 4 8 8 Cl 1.73598 * 120.37130 * 179.74171 * 7 6 5 9 9 C 1.38873 * 119.26188 * 359.72465 * 7 6 5 10 10 C 1.38425 * 118.47592 * 359.97438 * 9 7 6 11 11 C 1.50695 * 120.43880 * 180.02562 * 10 9 7 12 12 N 1.46499 * 109.47119 * 259.97955 * 11 10 9 13 13 C 1.46503 * 120.00146 * 269.99963 * 12 11 10 14 14 C 1.36943 * 120.00176 * 89.99802 * 12 11 10 15 15 H 1.08000 * 119.99938 * 22.06773 * 14 12 11 16 16 C 1.38812 * 119.99924 * 202.05899 * 14 12 11 17 17 N 1.31621 * 120.00163 * 11.27236 * 16 14 12 18 18 Si 1.86800 * 119.99938 * 191.26604 * 16 14 12 19 19 H 1.48504 * 109.47083 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.47039 * 120.00678 * 18 16 14 21 21 H 1.48503 * 109.47219 * 240.00311 * 18 16 14 22 22 H 1.08998 * 109.47034 * 59.99944 * 1 2 3 23 23 H 1.08996 * 109.46991 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.46805 * 299.99849 * 1 2 3 25 25 H 1.09004 * 109.46805 * 240.00151 * 2 1 3 26 26 H 1.08998 * 109.47034 * 120.00056 * 2 1 3 27 27 H 1.08002 * 119.58883 * 180.27086 * 6 5 4 28 28 H 1.07997 * 120.76398 * 180.02562 * 9 7 6 29 29 H 1.08999 * 109.47167 * 19.97526 * 11 10 9 30 30 H 1.08998 * 109.47397 * 139.97528 * 11 10 9 31 31 H 1.08999 * 109.47455 * 94.63245 * 13 12 11 32 32 H 1.08994 * 109.47233 * 214.63821 * 13 12 11 33 33 H 1.09006 * 109.46555 * 334.63338 * 13 12 11 34 34 H 0.96996 * 120.00142 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3517 1.5250 -0.0005 5 7 4.1513 0.4715 0.0045 6 6 5.4645 0.5989 -0.0015 7 6 6.0546 1.8485 -0.0015 8 17 7.7838 2.0026 -0.0027 9 6 5.2490 2.9796 -0.0010 10 6 3.8750 2.8113 -0.0010 11 6 2.9593 4.0081 -0.0010 12 7 2.4717 4.2499 1.3591 13 6 1.2356 3.6116 1.8185 14 6 3.1713 5.0726 2.2012 15 1 3.8508 5.8079 1.7964 16 6 3.0068 4.9615 3.5750 17 7 2.3586 3.9329 4.0792 18 14 3.7056 6.2717 4.7083 19 1 4.3842 7.3156 3.8989 20 1 2.6039 6.8896 5.4892 21 1 4.6839 5.6518 5.6378 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 6.0860 -0.2844 -0.0015 28 1 5.6844 3.9679 -0.0015 29 1 3.5055 4.8836 -0.3521 30 1 2.1135 3.8185 -0.6619 31 1 1.4772 2.6869 2.3426 32 1 0.7082 4.2851 2.4940 33 1 0.6017 3.3879 0.9604 34 1 2.2441 3.8550 5.0392 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233172161.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:03 Heat of formation + Delta-G solvation = 11.536474 kcal Electronic energy + Delta-G solvation = -18969.448513 eV Core-core repulsion = 15929.550678 eV Total energy + Delta-G solvation = -3039.897835 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.088 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.27610 -37.68507 -36.19420 -35.67824 -32.68471 -31.65683 -30.83793 -29.38625 -26.19431 -25.76889 -23.87769 -22.44208 -21.91550 -20.54271 -18.10310 -17.00176 -16.36187 -15.94608 -15.81002 -14.84321 -14.17494 -13.91604 -13.67416 -13.39078 -13.09114 -12.99975 -12.50565 -12.44974 -12.33241 -11.53379 -11.40088 -11.36217 -11.15859 -10.94909 -10.90566 -10.63290 -10.33597 -10.23916 -10.00809 -9.97447 -9.30898 -9.18532 -8.58852 -7.85355 -6.81493 -5.77367 -3.20631 1.46293 1.62026 2.38553 3.35278 3.42344 3.44169 3.46330 4.08619 4.47723 4.62747 5.15342 5.23972 5.27468 5.31689 5.44988 5.47931 5.61319 5.71235 5.79161 5.99963 6.05842 6.09003 6.24607 6.33080 6.55571 6.68026 6.80750 6.89892 7.42604 7.67063 7.74645 7.83804 8.16467 8.33966 9.18558 9.80609 10.30102 11.26081 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.012551 B = 0.008629 C = 0.005657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2230.292263 B = 3244.237565 C = 4948.310320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.067 3.933 3 O -0.288 6.288 4 C 0.334 3.666 5 N -0.533 5.533 6 C 0.126 3.874 7 C -0.121 4.121 8 Cl -0.076 7.076 9 C -0.034 4.034 10 C -0.132 4.132 11 C 0.192 3.808 12 N -0.585 5.585 13 C 0.171 3.829 14 C -0.254 4.254 15 H 0.072 0.928 16 C 0.004 3.996 17 N -0.900 5.900 18 Si 0.905 3.095 19 H -0.276 1.276 20 H -0.288 1.288 21 H -0.290 1.290 22 H 0.062 0.938 23 H 0.072 0.928 24 H 0.069 0.931 25 H 0.058 0.942 26 H 0.062 0.938 27 H 0.156 0.844 28 H 0.143 0.857 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.028 0.972 32 H 0.042 0.958 33 H 0.003 0.997 34 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.040 -6.444 -9.663 11.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.008 4.008 3 O -0.195 6.195 4 C 0.153 3.847 5 N -0.258 5.258 6 C -0.031 4.031 7 C -0.151 4.151 8 Cl -0.047 7.047 9 C -0.061 4.061 10 C -0.139 4.139 11 C 0.064 3.936 12 N -0.305 5.305 13 C 0.027 3.973 14 C -0.384 4.384 15 H 0.089 0.911 16 C -0.196 4.196 17 N -0.544 5.544 18 Si 0.735 3.265 19 H -0.201 1.201 20 H -0.215 1.215 21 H -0.217 1.217 22 H 0.081 0.919 23 H 0.091 0.909 24 H 0.088 0.912 25 H 0.077 0.923 26 H 0.080 0.920 27 H 0.174 0.826 28 H 0.161 0.839 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.046 0.954 32 H 0.060 0.940 33 H 0.021 0.979 34 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 1.459 -7.066 -9.440 11.882 hybrid contribution 1.188 0.980 1.021 1.848 sum 2.647 -6.086 -8.419 10.720 Atomic orbital electron populations 1.21790 0.93310 1.02261 1.03507 1.22507 0.94663 0.81864 1.01800 1.86342 1.16478 1.29413 1.87248 1.19644 0.83918 0.89379 0.91715 1.67345 1.05289 1.33135 1.19988 1.22012 0.89381 0.95261 0.96407 1.21759 0.84936 0.96195 1.12201 1.98326 1.10805 1.98263 1.97355 1.21152 0.91723 0.98168 0.95053 1.21341 0.94719 0.95962 1.01891 1.19850 0.93852 0.91023 0.88915 1.44224 1.23467 1.52714 1.10053 1.20779 0.85299 0.97139 0.94116 1.19327 1.22315 1.09515 0.87234 0.91059 1.25092 0.99982 0.97316 0.97163 1.70102 1.44820 1.28167 1.11317 0.86177 0.78384 0.81094 0.80886 1.20145 1.21517 1.21690 0.91913 0.90880 0.91237 0.92338 0.91956 0.82643 0.83879 0.92486 0.92483 0.95399 0.93976 0.97859 0.93711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 10.28 37.16 0.38 -1.47 16 2 C 0.07 1.02 6.03 37.16 0.22 1.24 16 3 O -0.29 -5.43 8.16 -18.80 -0.15 -5.58 16 4 C 0.33 6.57 7.47 -17.13 -0.13 6.45 16 5 N -0.53 -9.81 9.21 -13.30 -0.12 -9.94 16 6 C 0.13 2.08 10.98 -17.52 -0.19 1.88 16 7 C -0.12 -2.03 6.34 -39.36 -0.25 -2.28 16 8 Cl -0.08 -1.10 28.99 -51.86 -1.50 -2.60 16 9 C -0.03 -0.62 9.62 -39.28 -0.38 -1.00 16 10 C -0.13 -2.62 5.49 -104.32 -0.57 -3.20 16 11 C 0.19 3.95 5.52 -5.20 -0.03 3.92 16 12 N -0.58 -14.57 2.91 -182.50 -0.53 -15.10 16 13 C 0.17 4.25 7.97 59.85 0.48 4.72 16 14 C -0.25 -6.86 9.68 -15.06 -0.15 -7.00 16 15 H 0.07 1.86 7.84 -52.49 -0.41 1.45 16 16 C 0.00 0.10 5.13 -17.43 -0.09 0.01 16 17 N -0.90 -26.23 10.56 55.49 0.59 -25.65 16 18 Si 0.90 21.78 29.57 -169.99 -5.03 16.76 16 19 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 20 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 21 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 22 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 23 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 24 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 25 H 0.06 0.81 8.11 -51.93 -0.42 0.39 16 26 H 0.06 0.99 8.10 -51.93 -0.42 0.57 16 27 H 0.16 2.08 8.06 -52.49 -0.42 1.66 16 28 H 0.14 2.42 8.06 -52.49 -0.42 2.00 16 29 H 0.06 1.09 7.92 -51.93 -0.41 0.68 16 30 H 0.06 1.10 7.59 -51.93 -0.39 0.70 16 31 H 0.03 0.76 7.40 -51.93 -0.38 0.38 16 32 H 0.04 1.12 7.19 -51.93 -0.37 0.75 16 33 H 0.00 0.06 7.68 -51.93 -0.40 -0.33 16 34 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 305.92 15.07 4.61 4.61 Total: -1.00 -30.08 305.92 -7.31 -37.39 By element: Atomic # 1 Polarization: 1.31 SS G_CDS: -4.46 Total: -3.15 kcal Atomic # 6 Polarization: 3.96 SS G_CDS: -0.70 Total: 3.26 kcal Atomic # 7 Polarization: -50.62 SS G_CDS: -0.07 Total: -50.68 kcal Atomic # 8 Polarization: -5.43 SS G_CDS: -0.15 Total: -5.58 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.03 Total: 16.76 kcal Atomic # 17 Polarization: -1.10 SS G_CDS: -1.50 Total: -2.60 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -30.08 -7.31 -37.39 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233172161.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.922 kcal (2) G-P(sol) polarization free energy of solvation -30.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.386 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds