Wall clock time and date at job start Mon Mar 30 2020 01:22:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42897 * 109.47186 * 2 1 4 4 C 1.35697 * 117.00059 * 180.02562 * 3 2 1 5 5 N 1.32260 * 119.66916 * 359.72343 * 4 3 2 6 6 C 1.31945 * 121.65828 * 179.71082 * 5 4 3 7 7 C 1.38192 * 120.81645 * 0.56937 * 6 5 4 8 8 Cl 1.73598 * 120.37130 * 179.74171 * 7 6 5 9 9 C 1.38873 * 119.26188 * 359.72465 * 7 6 5 10 10 C 1.38425 * 118.47592 * 359.97438 * 9 7 6 11 11 C 1.50695 * 120.43880 * 180.02562 * 10 9 7 12 12 N 1.46499 * 109.47119 * 259.97955 * 11 10 9 13 13 C 1.46503 * 120.00146 * 269.99963 * 12 11 10 14 14 C 1.36943 * 120.00176 * 89.99802 * 12 11 10 15 15 H 1.08000 * 119.99938 * 22.06773 * 14 12 11 16 16 C 1.38812 * 119.99924 * 202.05899 * 14 12 11 17 17 N 1.31621 * 120.00163 * 11.27236 * 16 14 12 18 18 Si 1.86800 * 119.99938 * 191.26604 * 16 14 12 19 19 H 1.48504 * 109.47083 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.47039 * 120.00678 * 18 16 14 21 21 H 1.48503 * 109.47219 * 240.00311 * 18 16 14 22 22 H 1.08998 * 109.47034 * 59.99944 * 1 2 3 23 23 H 1.08996 * 109.46991 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.46805 * 299.99849 * 1 2 3 25 25 H 1.09004 * 109.46805 * 240.00151 * 2 1 3 26 26 H 1.08998 * 109.47034 * 120.00056 * 2 1 3 27 27 H 1.08002 * 119.58883 * 180.27086 * 6 5 4 28 28 H 1.07997 * 120.76398 * 180.02562 * 9 7 6 29 29 H 1.08999 * 109.47167 * 19.97526 * 11 10 9 30 30 H 1.08998 * 109.47397 * 139.97528 * 11 10 9 31 31 H 1.08999 * 109.47455 * 94.63245 * 13 12 11 32 32 H 1.08994 * 109.47233 * 214.63821 * 13 12 11 33 33 H 1.09006 * 109.46555 * 334.63338 * 13 12 11 34 34 H 0.96996 * 120.00142 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3517 1.5250 -0.0005 5 7 4.1513 0.4715 0.0045 6 6 5.4645 0.5989 -0.0015 7 6 6.0546 1.8485 -0.0015 8 17 7.7838 2.0026 -0.0027 9 6 5.2490 2.9796 -0.0010 10 6 3.8750 2.8113 -0.0010 11 6 2.9593 4.0081 -0.0010 12 7 2.4717 4.2499 1.3591 13 6 1.2356 3.6116 1.8185 14 6 3.1713 5.0726 2.2012 15 1 3.8508 5.8079 1.7964 16 6 3.0068 4.9615 3.5750 17 7 2.3586 3.9329 4.0792 18 14 3.7056 6.2717 4.7083 19 1 4.3842 7.3156 3.8989 20 1 2.6039 6.8896 5.4892 21 1 4.6839 5.6518 5.6378 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 6.0860 -0.2844 -0.0015 28 1 5.6844 3.9679 -0.0015 29 1 3.5055 4.8836 -0.3521 30 1 2.1135 3.8185 -0.6619 31 1 1.4772 2.6869 2.3426 32 1 0.7082 4.2851 2.4940 33 1 0.6017 3.3879 0.9604 34 1 2.2441 3.8550 5.0392 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233172161.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:03 Heat of formation + Delta-G solvation = -7.027470 kcal Electronic energy + Delta-G solvation = -18970.253506 eV Core-core repulsion = 15929.550678 eV Total energy + Delta-G solvation = -3040.702828 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.088 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.68690 -39.03678 -37.63404 -37.33067 -34.36375 -32.88531 -32.57995 -30.82073 -28.02083 -27.61366 -25.21749 -24.08161 -23.20676 -22.25219 -19.47315 -18.81640 -17.94736 -17.31020 -17.23497 -16.67201 -15.62585 -15.50838 -15.11993 -15.03701 -14.82378 -14.52931 -13.94114 -13.69802 -13.37951 -13.20424 -13.09797 -12.84239 -12.65935 -12.59071 -12.36568 -12.28476 -12.00488 -11.98740 -11.82695 -11.55816 -10.77998 -10.64601 -10.59958 -9.26252 -8.79941 -7.82336 -5.29521 0.06321 0.19615 1.08632 1.45523 1.46997 1.56818 2.15138 2.49323 2.68671 3.28209 3.34872 3.82192 3.86003 3.97354 4.00313 4.12386 4.25346 4.42425 4.47248 4.66691 4.83467 4.89311 4.94345 4.99434 5.01123 5.17649 5.25760 5.37193 5.37888 5.65592 5.77754 6.30040 6.32131 6.75520 7.14750 7.85431 8.30845 9.20710 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.012551 B = 0.008629 C = 0.005657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2230.292263 B = 3244.237565 C = 4948.310320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.063 3.937 3 O -0.305 6.305 4 C 0.320 3.680 5 N -0.541 5.541 6 C 0.134 3.866 7 C -0.126 4.126 8 Cl -0.051 7.051 9 C -0.034 4.034 10 C -0.156 4.156 11 C 0.195 3.805 12 N -0.603 5.603 13 C 0.195 3.805 14 C -0.256 4.256 15 H 0.079 0.921 16 C -0.053 4.053 17 N -0.937 5.937 18 Si 0.965 3.035 19 H -0.261 1.261 20 H -0.292 1.292 21 H -0.297 1.297 22 H 0.070 0.930 23 H 0.103 0.897 24 H 0.052 0.948 25 H 0.072 0.928 26 H 0.048 0.952 27 H 0.190 0.810 28 H 0.154 0.846 29 H 0.071 0.929 30 H 0.067 0.933 31 H -0.004 1.004 32 H 0.013 0.987 33 H 0.026 0.974 34 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.275 -6.774 -10.911 13.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.012 4.012 3 O -0.212 6.212 4 C 0.141 3.859 5 N -0.266 5.266 6 C -0.023 4.023 7 C -0.156 4.156 8 Cl -0.022 7.022 9 C -0.060 4.060 10 C -0.163 4.163 11 C 0.068 3.932 12 N -0.324 5.324 13 C 0.051 3.949 14 C -0.386 4.386 15 H 0.097 0.903 16 C -0.248 4.248 17 N -0.584 5.584 18 Si 0.793 3.207 19 H -0.185 1.185 20 H -0.219 1.219 21 H -0.225 1.225 22 H 0.089 0.911 23 H 0.121 0.879 24 H 0.071 0.929 25 H 0.090 0.910 26 H 0.067 0.933 27 H 0.207 0.793 28 H 0.171 0.829 29 H 0.089 0.911 30 H 0.085 0.915 31 H 0.014 0.986 32 H 0.032 0.968 33 H 0.045 0.955 34 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 2.714 -7.396 -10.742 13.322 hybrid contribution 0.916 0.971 1.227 1.813 sum 3.630 -6.425 -9.515 12.042 Atomic orbital electron populations 1.21802 0.91157 1.04123 1.03034 1.22749 0.96336 0.80429 1.01709 1.86318 1.16279 1.31499 1.87117 1.19840 0.84515 0.89717 0.91861 1.67428 1.06073 1.32751 1.20308 1.22642 0.89094 0.96495 0.94032 1.21807 0.86302 0.95827 1.11639 1.98337 1.08484 1.98217 1.97209 1.21370 0.91412 0.99307 0.93928 1.21232 0.95385 0.95728 1.03914 1.19873 0.94635 0.92002 0.86712 1.44303 1.23816 1.53248 1.10989 1.20381 0.85723 0.94843 0.93995 1.19649 1.21430 1.09876 0.87662 0.90349 1.25801 1.01139 0.99226 0.98649 1.70276 1.47145 1.30092 1.10850 0.85228 0.77348 0.79121 0.78953 1.18504 1.21926 1.22453 0.91085 0.87857 0.92900 0.91008 0.93317 0.79333 0.82876 0.91100 0.91458 0.98574 0.96817 0.95522 0.94549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.36 10.28 71.98 0.74 -2.62 16 2 C 0.06 1.85 6.03 71.98 0.43 2.29 16 3 O -0.31 -11.41 8.16 -90.17 -0.74 -12.14 16 4 C 0.32 12.39 7.47 84.78 0.63 13.02 16 5 N -0.54 -19.14 9.21 -308.85 -2.85 -21.99 16 6 C 0.13 4.10 10.98 84.66 0.93 5.03 16 7 C -0.13 -3.94 6.34 22.41 0.14 -3.79 16 8 Cl -0.05 -1.33 28.99 -2.72 -0.08 -1.41 16 9 C -0.03 -1.17 9.62 22.47 0.22 -0.95 16 10 C -0.16 -6.08 5.49 -19.67 -0.11 -6.19 16 11 C 0.19 7.85 5.52 85.63 0.47 8.32 16 12 N -0.60 -30.08 2.91 -731.31 -2.13 -32.21 16 13 C 0.20 9.92 7.97 127.77 1.02 10.94 16 14 C -0.26 -13.79 9.68 84.03 0.81 -12.97 16 15 H 0.08 4.01 7.84 -2.91 -0.02 3.99 16 16 C -0.05 -2.98 5.13 84.86 0.44 -2.54 16 17 N -0.94 -56.15 10.56 21.65 0.23 -55.92 16 18 Si 0.96 45.16 29.57 68.60 2.03 47.19 16 19 H -0.26 -11.38 7.11 99.48 0.71 -10.68 16 20 H -0.29 -13.71 7.11 99.48 0.71 -13.01 16 21 H -0.30 -14.11 7.11 99.48 0.71 -13.41 16 22 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 23 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 24 H 0.05 1.41 8.14 -2.38 -0.02 1.39 16 25 H 0.07 1.90 8.11 -2.38 -0.02 1.88 16 26 H 0.05 1.55 8.10 -2.39 -0.02 1.53 16 27 H 0.19 4.39 8.06 -2.91 -0.02 4.37 16 28 H 0.15 4.90 8.06 -2.91 -0.02 4.88 16 29 H 0.07 2.61 7.92 -2.39 -0.02 2.59 16 30 H 0.07 2.53 7.59 -2.39 -0.02 2.51 16 31 H 0.00 -0.23 7.40 -2.39 -0.02 -0.25 16 32 H 0.01 0.73 7.19 -2.39 -0.02 0.71 16 33 H 0.03 1.18 7.68 -2.38 -0.02 1.16 16 34 H 0.25 14.36 8.31 -92.71 -0.77 13.59 16 Total: -1.00 -64.73 305.92 3.29 -61.44 By element: Atomic # 1 Polarization: 3.42 SS G_CDS: 1.09 Total: 4.51 kcal Atomic # 6 Polarization: 4.80 SS G_CDS: 5.73 Total: 10.53 kcal Atomic # 7 Polarization: -105.37 SS G_CDS: -4.74 Total: -110.11 kcal Atomic # 8 Polarization: -11.41 SS G_CDS: -0.74 Total: -12.14 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.19 kcal Atomic # 17 Polarization: -1.33 SS G_CDS: -0.08 Total: -1.41 kcal Total: -64.73 3.29 -61.44 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233172161.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.411 kcal (2) G-P(sol) polarization free energy of solvation -64.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds