Wall clock time and date at job start Mon Mar 30 2020 00:55:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47166 * 2 1 4 4 C 1.50700 * 109.47029 * 119.99983 * 2 1 3 5 5 N 1.31786 * 119.09435 * 299.98179 * 4 2 1 6 6 C 1.32491 * 120.96444 * 180.02562 * 5 4 2 7 7 C 1.38230 * 119.17432 * 359.71429 * 6 5 4 8 8 C 1.39377 * 118.34868 * 0.54761 * 7 6 5 9 9 O 1.35526 * 120.50704 * 179.73510 * 8 7 6 10 10 C 1.42904 * 116.99449 * 179.72212 * 9 8 7 11 11 H 1.08998 * 109.47214 * 29.99497 * 10 9 8 12 12 C 1.50695 * 109.46709 * 149.99822 * 10 9 8 13 13 H 1.07999 * 120.00306 * 5.31452 * 12 10 9 14 14 C 1.37877 * 120.00026 * 185.31816 * 12 10 9 15 15 N 1.31517 * 119.99880 * 5.57226 * 14 12 10 16 16 Si 1.86802 * 120.00350 * 185.30117 * 14 12 10 17 17 H 1.48493 * 109.47251 * 84.99740 * 16 14 12 18 18 H 1.48502 * 109.46987 * 204.99718 * 16 14 12 19 19 H 1.48500 * 109.46658 * 324.99605 * 16 14 12 20 20 C 1.53004 * 109.46783 * 269.99419 * 10 9 8 21 21 Cl 1.80299 * 109.47239 * 65.67184 * 20 10 9 22 22 N 1.31765 * 119.09288 * 119.99765 * 4 2 1 23 23 H 1.08996 * 109.47138 * 300.00129 * 1 2 3 24 24 H 1.09003 * 109.46968 * 59.99898 * 1 2 3 25 25 H 1.08997 * 109.47280 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46824 * 240.00210 * 2 1 3 27 27 H 1.09000 * 109.47322 * 180.02562 * 3 2 1 28 28 H 1.09003 * 109.47261 * 299.99923 * 3 2 1 29 29 H 1.09004 * 109.47181 * 59.99605 * 3 2 1 30 30 H 1.08006 * 120.40954 * 180.02562 * 6 5 4 31 31 H 1.08003 * 120.82206 * 180.27162 * 7 6 5 32 32 H 0.96999 * 120.00508 * 179.72934 * 15 14 12 33 33 H 1.08997 * 109.46922 * 185.66828 * 20 10 9 34 34 H 1.09005 * 109.47215 * 305.67255 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 7 1.7034 -0.2446 2.4185 6 6 2.1248 -0.8397 3.5247 7 6 2.9159 -1.9686 3.4230 8 6 3.2493 -2.4307 2.1511 9 8 4.0270 -3.5304 2.0006 10 6 4.3172 -3.9415 0.6631 11 1 4.3294 -3.0694 0.0094 12 6 5.6643 -4.6160 0.6261 13 1 6.2028 -4.7973 1.5445 14 6 6.2093 -5.0016 -0.5802 15 7 5.6070 -4.6840 -1.7054 16 14 7.8072 -5.9686 -0.6169 17 1 7.5146 -7.4147 -0.4489 18 1 8.4887 -5.7493 -1.9179 19 1 8.6884 -5.5103 0.4871 20 6 3.2430 -4.9212 0.1863 21 17 1.6591 -4.0674 0.0716 22 7 2.7886 -1.7801 1.0888 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 3.1300 1.4425 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6766 1.9564 0.8900 30 1 1.8494 -0.4504 4.4938 31 1 3.2705 -2.4773 4.3073 32 1 5.9924 -4.9519 -2.5543 33 1 3.5169 -5.3120 -0.7937 34 1 3.1614 -5.7446 0.8959 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233797567.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:57 Heat of formation + Delta-G solvation = -32.588759 kcal Electronic energy + Delta-G solvation = -18887.769015 eV Core-core repulsion = 15845.957766 eV Total energy + Delta-G solvation = -3041.811248 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.088 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.07133 -39.60298 -36.69465 -36.27341 -35.35968 -33.95875 -32.15770 -30.87146 -28.01838 -27.28588 -25.52638 -25.30874 -22.96930 -21.67734 -19.18845 -18.91503 -18.17431 -16.92090 -16.67462 -16.21170 -16.14751 -15.45808 -15.22374 -15.07398 -14.72441 -14.53579 -14.00637 -13.79807 -13.50292 -13.03617 -12.99397 -12.86468 -12.70242 -12.57539 -12.19735 -12.09882 -11.82650 -11.80118 -11.52564 -11.30954 -11.19462 -10.67935 -10.63509 -10.08882 -9.75028 -8.38270 -6.55251 0.10903 0.38533 1.39253 1.41401 1.52406 1.59802 2.15625 2.46683 2.91814 2.96444 3.00503 3.31863 4.02973 4.12412 4.16672 4.24803 4.31766 4.38353 4.38598 4.55366 4.73893 4.84131 4.85891 4.94165 4.97510 5.11835 5.22383 5.33777 5.35159 5.49265 5.58709 5.76820 6.19458 6.37090 6.66852 7.15889 7.31210 8.69508 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.022979 B = 0.006089 C = 0.005858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.208026 B = 4597.284057 C = 4778.451910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.031 4.031 3 C -0.128 4.128 4 C 0.343 3.657 5 N -0.550 5.550 6 C 0.174 3.826 7 C -0.267 4.267 8 C 0.345 3.655 9 O -0.313 6.313 10 C 0.220 3.780 11 H 0.039 0.961 12 C -0.555 4.555 13 H 0.068 0.932 14 C 0.027 3.973 15 N -0.906 5.906 16 Si 0.978 3.022 17 H -0.265 1.265 18 H -0.277 1.277 19 H -0.268 1.268 20 C -0.016 4.016 21 Cl -0.213 7.213 22 N -0.569 5.569 23 H 0.070 0.930 24 H 0.086 0.914 25 H 0.033 0.967 26 H 0.075 0.925 27 H 0.037 0.963 28 H 0.086 0.914 29 H 0.070 0.930 30 H 0.216 0.784 31 H 0.166 0.834 32 H 0.275 0.725 33 H 0.099 0.901 34 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.287 7.295 5.633 11.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.052 4.052 3 C -0.186 4.186 4 C 0.075 3.925 5 N -0.269 5.269 6 C 0.011 3.989 7 C -0.290 4.290 8 C 0.159 3.841 9 O -0.217 6.217 10 C 0.165 3.835 11 H 0.057 0.943 12 C -0.592 4.592 13 H 0.086 0.914 14 C -0.175 4.175 15 N -0.542 5.542 16 Si 0.801 3.199 17 H -0.190 1.190 18 H -0.202 1.202 19 H -0.193 1.193 20 C -0.080 4.080 21 Cl -0.187 7.187 22 N -0.298 5.298 23 H 0.089 0.911 24 H 0.104 0.896 25 H 0.052 0.948 26 H 0.093 0.907 27 H 0.057 0.943 28 H 0.105 0.895 29 H 0.089 0.911 30 H 0.232 0.768 31 H 0.184 0.816 32 H 0.084 0.916 33 H 0.118 0.882 34 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -7.528 7.524 4.810 11.680 hybrid contribution 1.149 -1.324 0.215 1.766 sum -6.379 6.200 5.025 10.217 Atomic orbital electron populations 1.21668 0.91804 1.01158 1.03703 1.20045 0.97511 0.96330 0.91311 1.21702 1.00018 0.93068 1.03774 1.23249 0.88078 0.86900 0.94235 1.68189 1.26263 1.33785 0.98659 1.23639 0.88080 0.88476 0.98706 1.22215 1.07513 1.02880 0.96416 1.20724 0.86373 0.85956 0.91089 1.86236 1.62067 1.39170 1.34259 1.20155 0.92469 0.93961 0.76938 0.94309 1.21201 1.02081 1.41562 0.94391 0.91419 1.25783 1.01426 0.96071 0.94225 1.70041 1.41443 1.44453 0.98278 0.85259 0.77901 0.78904 0.77821 1.18999 1.20228 1.19252 1.25146 0.81230 0.97151 1.04437 1.98634 1.38905 1.82080 1.99068 1.68154 1.16070 1.11211 1.34390 0.91096 0.89558 0.94817 0.90706 0.94333 0.89519 0.91062 0.76798 0.81618 0.91598 0.88229 0.90374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.16 9.09 71.98 0.65 -2.51 16 2 C -0.03 -0.95 3.25 -11.54 -0.04 -0.99 16 3 C -0.13 -3.15 9.09 71.98 0.65 -2.49 16 4 C 0.34 12.35 6.34 138.76 0.88 13.23 16 5 N -0.55 -17.28 9.80 -188.05 -1.84 -19.12 16 6 C 0.17 4.70 11.29 84.59 0.96 5.66 16 7 C -0.27 -8.66 10.13 22.54 0.23 -8.43 16 8 C 0.34 14.60 6.69 84.82 0.57 15.17 16 9 O -0.31 -15.07 9.75 -88.29 -0.86 -15.93 16 10 C 0.22 11.44 2.12 29.85 0.06 11.50 16 11 H 0.04 2.27 7.00 -2.39 -0.02 2.25 16 12 C -0.55 -30.09 8.82 25.60 0.23 -29.86 16 13 H 0.07 3.65 7.82 -2.91 -0.02 3.63 16 14 C 0.03 1.41 5.22 84.65 0.44 1.86 16 15 N -0.91 -49.41 11.96 21.45 0.26 -49.15 16 16 Si 0.98 41.09 29.54 68.60 2.03 43.12 16 17 H -0.27 -10.67 7.11 99.48 0.71 -9.96 16 18 H -0.28 -11.33 7.11 99.48 0.71 -10.62 16 19 H -0.27 -11.08 7.11 99.48 0.71 -10.38 16 20 C -0.02 -0.79 6.22 71.98 0.45 -0.34 16 21 Cl -0.21 -9.31 25.95 -2.72 -0.07 -9.38 16 22 N -0.57 -24.30 6.42 -300.69 -1.93 -26.23 16 23 H 0.07 1.69 8.01 -2.39 -0.02 1.67 16 24 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 25 H 0.03 0.95 8.14 -2.39 -0.02 0.94 16 26 H 0.07 2.56 8.10 -2.39 -0.02 2.54 16 27 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 29 H 0.07 1.66 8.01 -2.38 -0.02 1.64 16 30 H 0.22 3.46 8.06 -2.91 -0.02 3.44 16 31 H 0.17 4.45 8.06 -2.91 -0.02 4.43 16 32 H 0.27 14.05 8.31 -92.71 -0.77 13.28 16 33 H 0.10 5.11 6.62 -2.39 -0.02 5.09 16 34 H 0.08 3.55 8.14 -2.38 -0.02 3.53 16 Total: -1.00 -61.81 303.69 3.75 -58.06 By element: Atomic # 1 Polarization: 14.76 SS G_CDS: 1.09 Total: 15.85 kcal Atomic # 6 Polarization: -2.29 SS G_CDS: 5.08 Total: 2.79 kcal Atomic # 7 Polarization: -90.99 SS G_CDS: -3.52 Total: -94.50 kcal Atomic # 8 Polarization: -15.07 SS G_CDS: -0.86 Total: -15.93 kcal Atomic # 14 Polarization: 41.09 SS G_CDS: 2.03 Total: 43.12 kcal Atomic # 17 Polarization: -9.31 SS G_CDS: -0.07 Total: -9.38 kcal Total: -61.81 3.75 -58.06 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233797567.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.471 kcal (2) G-P(sol) polarization free energy of solvation -61.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds