Wall clock time and date at job start Mon Mar 30 2020 00:55:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47004 * 2 1 4 4 C 1.50701 * 109.47325 * 120.00494 * 2 1 3 5 5 C 1.38760 * 120.01113 * 274.99739 * 4 2 1 6 6 C 1.38638 * 118.01886 * 179.97438 * 5 4 2 7 7 C 1.39266 * 117.91984 * 0.02562 * 6 5 4 8 8 O 1.35692 * 120.13919 * 179.97438 * 7 6 5 9 9 C 1.42899 * 116.99998 * 180.02562 * 8 7 6 10 10 H 1.08999 * 109.47469 * 30.00558 * 9 8 7 11 11 C 1.50709 * 109.47151 * 150.00340 * 9 8 7 12 12 H 1.07992 * 120.00020 * 95.12271 * 11 9 8 13 13 C 1.37879 * 119.99294 * 275.12512 * 11 9 8 14 14 N 1.31506 * 120.00602 * 355.67605 * 13 11 9 15 15 Si 1.86803 * 119.99461 * 175.68004 * 13 11 9 16 16 H 1.48495 * 109.47130 * 59.99705 * 15 13 11 17 17 H 1.48503 * 109.47008 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.47173 * 299.99703 * 15 13 11 19 19 C 1.52997 * 109.47465 * 270.00032 * 9 8 7 20 20 Cl 1.80298 * 109.47009 * 65.71854 * 19 9 8 21 21 N 1.32347 * 119.72380 * 0.25350 * 7 6 5 22 22 N 1.28346 * 122.09452 * 359.46740 * 21 7 6 23 23 H 1.08998 * 109.46540 * 299.99646 * 1 2 3 24 24 H 1.09000 * 109.47219 * 59.99530 * 1 2 3 25 25 H 1.09004 * 109.46890 * 179.97438 * 1 2 3 26 26 H 1.09008 * 109.46723 * 240.00432 * 2 1 3 27 27 H 1.08996 * 109.46680 * 60.00791 * 3 2 1 28 28 H 1.09002 * 109.46945 * 180.02562 * 3 2 1 29 29 H 1.08996 * 109.47039 * 300.00291 * 3 2 1 30 30 H 1.07996 * 120.98923 * 0.02562 * 5 4 2 31 31 H 1.08001 * 121.04083 * 180.02562 * 6 5 4 32 32 H 0.96998 * 120.00181 * 5.56864 * 14 13 11 33 33 H 1.08997 * 109.47393 * 185.71888 * 19 9 8 34 34 H 1.09003 * 109.47057 * 305.71976 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 1.2304 5 6 2.1651 -0.0186 2.4258 6 6 2.6304 -0.7128 3.5320 7 6 2.9363 -2.0622 3.3737 8 8 3.3956 -2.7848 4.4264 9 6 3.6889 -4.1630 4.1887 10 1 4.0011 -4.2947 3.1527 11 6 4.7980 -4.6064 5.1077 12 1 4.5624 -5.0866 6.0458 13 6 6.1135 -4.3988 4.7506 14 7 6.4029 -3.8920 3.5722 15 14 7.4847 -4.8377 5.9409 16 1 7.4225 -6.2878 6.2546 17 1 8.7972 -4.5213 5.3224 18 1 7.3244 -4.0533 7.1916 19 6 2.4389 -5.0039 4.4554 20 17 1.1671 -4.5904 3.2461 21 7 2.7824 -2.6356 2.1908 22 7 2.3464 -1.9893 1.1713 23 1 -0.3632 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8933 -0.5138 -0.8901 27 1 1.6767 1.9562 0.8900 28 1 3.1300 1.4425 -0.0005 29 1 1.6766 1.9563 -0.8899 30 1 1.9126 1.0293 2.4928 31 1 2.7519 -0.2226 4.4866 32 1 5.6915 -3.5892 2.9864 33 1 2.6882 -6.0618 4.3731 34 1 2.0678 -4.7950 5.4588 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233887828.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:52 Heat of formation + Delta-G solvation = -30.624398 kcal Electronic energy + Delta-G solvation = -18757.010816 eV Core-core repulsion = 15715.284749 eV Total energy + Delta-G solvation = -3041.726067 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.088 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.10013 -39.62618 -36.92096 -36.62788 -35.41371 -33.78288 -31.98405 -30.98199 -28.07686 -26.82186 -25.69676 -25.27951 -23.21534 -21.64464 -19.82885 -19.08780 -18.20509 -17.08888 -16.83158 -16.04805 -15.74406 -15.53836 -15.40391 -14.98285 -14.73392 -14.26818 -14.03217 -13.98227 -13.73658 -13.14525 -13.08430 -12.89895 -12.71321 -12.29244 -12.11187 -11.95976 -11.93603 -11.71629 -11.44831 -11.24557 -11.05886 -11.03227 -10.70133 -10.30278 -9.59943 -8.88843 -6.73974 -0.06907 0.20869 1.35557 1.52896 1.59051 1.80321 2.21954 2.51274 2.68549 3.09054 3.24637 3.53851 3.71470 3.92278 4.05775 4.08581 4.15244 4.20200 4.27169 4.39515 4.61744 4.67338 4.80405 4.84979 4.92399 5.00223 5.06639 5.17874 5.35231 5.39527 5.44508 5.58755 5.91468 6.24838 6.53491 7.17428 7.89771 8.47375 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.023389 B = 0.005962 C = 0.005135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.851200 B = 4695.036290 C = 5451.435462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.033 4.033 3 C -0.142 4.142 4 C 0.023 3.977 5 C -0.074 4.074 6 C -0.158 4.158 7 C 0.243 3.757 8 O -0.321 6.321 9 C 0.182 3.818 10 H 0.038 0.962 11 C -0.613 4.613 12 H 0.073 0.927 13 C -0.012 4.012 14 N -0.907 5.907 15 Si 1.124 2.876 16 H -0.259 1.259 17 H -0.284 1.284 18 H -0.265 1.265 19 C -0.023 4.023 20 Cl -0.202 7.202 21 N -0.309 5.309 22 N -0.246 5.246 23 H 0.065 0.935 24 H 0.087 0.913 25 H 0.035 0.965 26 H 0.079 0.921 27 H 0.076 0.924 28 H 0.048 0.952 29 H 0.085 0.915 30 H 0.195 0.805 31 H 0.168 0.832 32 H 0.259 0.741 33 H 0.107 0.893 34 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.683 10.014 -2.244 14.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.054 4.054 3 C -0.200 4.200 4 C -0.126 4.126 5 C -0.102 4.102 6 C -0.187 4.187 7 C 0.058 3.942 8 O -0.226 6.226 9 C 0.128 3.872 10 H 0.056 0.944 11 C -0.649 4.649 12 H 0.091 0.909 13 C -0.214 4.214 14 N -0.542 5.542 15 Si 0.943 3.057 16 H -0.184 1.184 17 H -0.209 1.209 18 H -0.190 1.190 19 C -0.085 4.085 20 Cl -0.175 7.175 21 N -0.164 5.164 22 N -0.088 5.088 23 H 0.084 0.916 24 H 0.106 0.894 25 H 0.054 0.946 26 H 0.097 0.903 27 H 0.095 0.905 28 H 0.067 0.933 29 H 0.104 0.896 30 H 0.212 0.788 31 H 0.186 0.814 32 H 0.070 0.930 33 H 0.125 0.875 34 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -7.967 8.573 -2.745 12.020 hybrid contribution -1.761 0.822 0.470 1.999 sum -9.727 9.394 -2.275 13.713 Atomic orbital electron populations 1.21785 0.92488 1.01466 1.03613 1.20002 0.96919 0.96258 0.92197 1.21911 1.00893 0.93052 1.04142 1.23268 0.99165 0.92098 0.98062 1.22500 0.94467 1.02934 0.90256 1.21968 1.02178 0.91548 1.03014 1.22164 0.90919 0.91914 0.89244 1.86689 1.76554 1.27255 1.32089 1.20500 0.91893 0.75915 0.98885 0.94401 1.22244 0.91899 1.42317 1.08469 0.90901 1.27726 1.02852 0.92344 0.98523 1.70890 1.37073 1.37837 1.08422 0.82881 0.71989 0.77921 0.72930 1.18366 1.20932 1.19015 1.24968 0.88331 1.02305 0.92943 1.98678 1.59541 1.95261 1.64053 1.73154 1.15673 1.30798 0.96802 1.72600 1.07298 1.08564 1.20387 0.91588 0.89372 0.94559 0.90300 0.90491 0.93275 0.89568 0.78779 0.81428 0.93042 0.87481 0.88622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.54 9.18 71.98 0.66 -1.88 16 2 C -0.03 -0.75 3.25 -11.54 -0.04 -0.79 16 3 C -0.14 -2.22 8.63 71.98 0.62 -1.59 16 4 C 0.02 0.72 5.87 42.69 0.25 0.97 16 5 C -0.07 -2.05 9.26 22.49 0.21 -1.84 16 6 C -0.16 -5.53 10.16 22.61 0.23 -5.30 16 7 C 0.24 11.09 6.74 84.86 0.57 11.66 16 8 O -0.32 -16.31 9.75 -90.11 -0.88 -17.19 16 9 C 0.18 9.43 1.96 29.85 0.06 9.49 16 10 H 0.04 2.22 5.55 -2.39 -0.01 2.21 16 11 C -0.61 -33.27 8.69 25.60 0.22 -33.04 16 12 H 0.07 3.73 7.81 -2.91 -0.02 3.70 16 13 C -0.01 -0.66 5.46 84.66 0.46 -0.19 16 14 N -0.91 -55.25 13.62 21.45 0.29 -54.96 16 15 Si 1.12 47.34 29.91 68.60 2.05 49.39 16 16 H -0.26 -9.88 7.11 99.48 0.71 -9.18 16 17 H -0.28 -12.12 7.11 99.48 0.71 -11.42 16 18 H -0.27 -10.35 7.11 99.48 0.71 -9.64 16 19 C -0.02 -0.98 6.31 71.98 0.45 -0.53 16 20 Cl -0.20 -8.50 25.96 -2.72 -0.07 -8.57 16 21 N -0.31 -14.60 7.58 -170.22 -1.29 -15.89 16 22 N -0.25 -10.31 11.42 -47.59 -0.54 -10.85 16 23 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 24 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 25 H 0.04 0.84 8.14 -2.38 -0.02 0.82 16 26 H 0.08 1.93 8.14 -2.38 -0.02 1.91 16 27 H 0.08 0.92 6.55 -2.39 -0.02 0.90 16 28 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.20 3.31 6.41 -2.91 -0.02 3.29 16 31 H 0.17 4.94 8.06 -2.91 -0.02 4.92 16 32 H 0.26 16.50 6.67 -92.71 -0.62 15.88 16 33 H 0.11 4.35 8.14 -2.39 -0.02 4.33 16 34 H 0.10 3.83 8.14 -2.39 -0.02 3.81 16 Total: -1.00 -70.05 301.24 4.52 -65.54 By element: Atomic # 1 Polarization: 14.34 SS G_CDS: 1.25 Total: 15.59 kcal Atomic # 6 Polarization: -26.76 SS G_CDS: 3.70 Total: -23.05 kcal Atomic # 7 Polarization: -80.16 SS G_CDS: -1.54 Total: -81.70 kcal Atomic # 8 Polarization: -16.31 SS G_CDS: -0.88 Total: -17.19 kcal Atomic # 14 Polarization: 47.34 SS G_CDS: 2.05 Total: 49.39 kcal Atomic # 17 Polarization: -8.50 SS G_CDS: -0.07 Total: -8.57 kcal Total: -70.05 4.52 -65.54 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233887828.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.912 kcal (2) G-P(sol) polarization free energy of solvation -70.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds