Wall clock time and date at job start Mon Mar 30 2020 01:24:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36933 * 120.00063 * 2 1 4 4 H 1.07997 * 119.99758 * 203.04922 * 3 2 1 5 5 C 1.38812 * 120.00095 * 23.04353 * 3 2 1 6 6 N 1.31627 * 119.99857 * 12.93734 * 5 3 2 7 7 Si 1.86795 * 120.00132 * 192.94184 * 5 3 2 8 8 H 1.48502 * 109.47224 * 359.97438 * 7 5 3 9 9 H 1.48499 * 109.47261 * 120.00311 * 7 5 3 10 10 H 1.48508 * 109.46956 * 239.99872 * 7 5 3 11 11 C 1.46502 * 119.99790 * 179.97438 * 2 1 3 12 12 C 1.53001 * 109.47018 * 90.00196 * 11 2 1 13 13 C 1.52997 * 109.47154 * 179.97438 * 12 11 2 14 14 N 1.46500 * 109.47296 * 179.97438 * 13 12 11 15 15 C 1.34780 * 120.00079 * 180.02562 * 14 13 12 16 16 O 1.21571 * 119.99936 * 359.97438 * 15 14 13 17 17 C 1.47745 * 119.99854 * 180.27552 * 15 14 13 18 18 C 1.39357 * 124.11560 * 179.44834 * 17 15 14 19 19 N 1.30089 * 112.14279 * 179.77868 * 18 17 15 20 20 S 1.55928 * 108.75757 * 0.46852 * 19 18 17 21 21 N 1.31489 * 124.11755 * 359.74728 * 17 15 14 22 22 H 1.09004 * 109.47008 * 275.11917 * 1 2 3 23 23 H 1.09001 * 109.47537 * 35.12372 * 1 2 3 24 24 H 1.08997 * 109.47106 * 155.12902 * 1 2 3 25 25 H 0.97000 * 119.99802 * 179.97438 * 6 5 3 26 26 H 1.08996 * 109.47421 * 329.99849 * 11 2 1 27 27 H 1.09004 * 109.46946 * 209.99859 * 11 2 1 28 28 H 1.08996 * 109.47308 * 59.99584 * 12 11 2 29 29 H 1.09004 * 109.46987 * 299.99638 * 12 11 2 30 30 H 1.09005 * 109.46978 * 60.00004 * 13 12 11 31 31 H 1.08997 * 109.47337 * 300.00191 * 13 12 11 32 32 H 0.96999 * 120.00147 * 359.97438 * 14 13 12 33 33 H 1.07992 * 123.92516 * 359.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1650 1.2231 -0.3662 5 6 1.5387 2.3401 0.4706 6 7 0.4118 2.2597 1.1459 7 14 2.3157 4.0073 0.1452 8 1 3.5698 3.8264 -0.6293 9 1 1.3714 4.8506 -0.6308 10 1 2.6241 4.6704 1.4378 11 6 2.1975 -1.2688 0.0006 12 6 2.4525 -1.7111 -1.4418 13 6 3.2180 -3.0358 -1.4412 14 7 3.4616 -3.4596 -2.8222 15 6 4.1241 -4.6073 -3.0680 16 8 4.5198 -5.2907 -2.1437 17 6 4.3751 -5.0316 -4.4608 18 6 5.0591 -6.1937 -4.8126 19 7 5.1424 -6.3422 -6.1023 20 16 4.4410 -5.1328 -6.7926 21 7 3.9852 -4.3559 -5.5192 22 1 -0.3633 0.0917 1.0236 23 1 -0.3634 0.8405 -0.5912 24 1 -0.3633 -0.9323 -0.4322 25 1 -0.0149 3.0662 1.4751 26 1 1.6084 -2.0282 0.5147 27 1 3.1499 -1.1382 0.5143 28 1 3.0415 -0.9517 -1.9559 29 1 1.5000 -1.8416 -1.9555 30 1 2.6292 -3.7954 -0.9269 31 1 4.1704 -2.9049 -0.9275 32 1 3.1456 -2.9146 -3.5597 33 1 5.4693 -6.8915 -4.0977 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001234453371.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:26 Heat of formation + Delta-G solvation = 42.356522 kcal Electronic energy + Delta-G solvation = -17562.165402 eV Core-core repulsion = 14557.940483 eV Total energy + Delta-G solvation = -3004.224919 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.089 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.37377 -39.17246 -36.31012 -34.91882 -33.90823 -31.98996 -30.04970 -27.82779 -25.96938 -25.41590 -23.26137 -21.82172 -20.79483 -20.05947 -19.68194 -17.83035 -16.73467 -16.40628 -15.95089 -15.58995 -15.29718 -14.83208 -14.08665 -14.03339 -13.34750 -12.96129 -12.76079 -12.54123 -11.78453 -11.76921 -11.53439 -11.45450 -11.37630 -11.04664 -10.81600 -10.80882 -10.49540 -10.28718 -10.16203 -9.85885 -9.80670 -9.57346 -9.08212 -8.55150 -6.74295 -5.72087 -3.19314 0.09025 1.04516 1.24623 1.28202 2.93563 2.98214 3.37438 3.44669 3.46690 4.17076 4.49633 4.59504 4.78532 5.14047 5.18965 5.40751 5.43240 5.75980 5.85829 6.05108 6.06271 6.10898 6.39287 6.45639 6.74172 6.75029 6.92793 7.36868 7.37917 7.73593 7.81174 7.96454 8.40418 9.24212 9.87783 10.36682 11.32701 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.031881 B = 0.003141 C = 0.003005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.067435 B = 8912.806159 C = 9316.958981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.162 3.838 2 N -0.603 5.603 3 C -0.256 4.256 4 H 0.069 0.931 5 C 0.001 3.999 6 N -0.907 5.907 7 Si 0.904 3.096 8 H -0.278 1.278 9 H -0.290 1.290 10 H -0.290 1.290 11 C 0.156 3.844 12 C -0.152 4.152 13 C 0.119 3.881 14 N -0.702 5.702 15 C 0.599 3.401 16 O -0.527 6.527 17 C 0.014 3.986 18 C 0.089 3.911 19 N -0.579 5.579 20 S 0.716 5.284 21 N -0.546 5.546 22 H 0.031 0.969 23 H 0.040 0.960 24 H -0.002 1.002 25 H 0.252 0.748 26 H 0.038 0.962 27 H 0.050 0.950 28 H 0.067 0.933 29 H 0.060 0.940 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.409 0.591 33 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.546 -15.199 -14.788 22.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.326 5.326 3 C -0.385 4.385 4 H 0.086 0.914 5 C -0.197 4.197 6 N -0.553 5.553 7 Si 0.734 3.266 8 H -0.203 1.203 9 H -0.216 1.216 10 H -0.217 1.217 11 C 0.027 3.973 12 C -0.193 4.193 13 C -0.004 4.004 14 N -0.353 5.353 15 C 0.379 3.621 16 O -0.403 6.403 17 C -0.161 4.161 18 C -0.104 4.104 19 N -0.420 5.420 20 S 0.758 5.242 21 N -0.396 5.396 22 H 0.049 0.951 23 H 0.058 0.942 24 H 0.016 0.984 25 H 0.062 0.938 26 H 0.057 0.943 27 H 0.068 0.932 28 H 0.086 0.914 29 H 0.079 0.921 30 H 0.088 0.912 31 H 0.090 0.910 32 H 0.245 0.755 33 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges 6.451 -15.094 -16.057 22.963 hybrid contribution 0.389 0.861 1.173 1.506 sum 6.840 -14.233 -14.884 21.701 Atomic orbital electron populations 1.20795 0.82659 0.95332 0.99496 1.43898 1.01863 1.00680 1.86109 1.19232 0.98278 0.85628 1.35391 0.91367 1.25038 0.97903 0.98576 0.98219 1.70085 1.19465 1.27066 1.38635 0.86193 0.78543 0.84342 0.77513 1.20327 1.21640 1.21716 1.20592 0.96423 0.88559 0.91687 1.22562 0.99553 0.94048 1.03095 1.21602 1.00858 0.97340 0.80638 1.46005 1.55945 1.22614 1.10717 1.16774 0.78976 0.81783 0.84614 1.90837 1.51741 1.54294 1.43383 1.22637 1.03488 0.95161 0.94820 1.23803 0.98180 0.97563 0.90892 1.72270 1.26151 1.30566 1.13003 1.79104 1.31080 0.98659 1.15389 1.72469 1.25695 1.35140 1.06255 0.95055 0.94165 0.98386 0.93814 0.94324 0.93187 0.91417 0.92089 0.91209 0.91045 0.75497 0.76855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.97 8.98 59.85 0.54 4.51 16 2 N -0.60 -15.04 2.92 -181.12 -0.53 -15.57 16 3 C -0.26 -6.99 9.65 -15.06 -0.15 -7.14 16 4 H 0.07 1.82 7.86 -52.49 -0.41 1.41 16 5 C 0.00 0.02 5.10 -17.43 -0.09 -0.07 16 6 N -0.91 -26.55 10.71 55.49 0.59 -25.95 16 7 Si 0.90 21.79 29.57 -169.99 -5.03 16.76 16 8 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 9 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 10 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 11 C 0.16 3.08 5.64 -4.04 -0.02 3.05 16 12 C -0.15 -2.45 5.65 -26.73 -0.15 -2.60 16 13 C 0.12 1.65 5.67 -4.04 -0.02 1.62 16 14 N -0.70 -8.98 5.55 -61.28 -0.34 -9.32 16 15 C 0.60 7.88 7.82 -12.37 -0.10 7.78 16 16 O -0.53 -8.16 16.81 5.30 0.09 -8.08 16 17 C 0.01 0.16 6.81 -83.71 -0.57 -0.41 16 18 C 0.09 0.86 11.22 -17.87 -0.20 0.66 16 19 N -0.58 -5.42 11.41 19.43 0.22 -5.20 16 20 S 0.72 5.37 23.69 -107.50 -2.55 2.82 16 21 N -0.55 -5.58 11.00 23.18 0.26 -5.32 16 22 H 0.03 0.83 7.34 -51.93 -0.38 0.45 16 23 H 0.04 1.05 7.34 -51.93 -0.38 0.67 16 24 H 0.00 -0.05 8.03 -51.93 -0.42 -0.47 16 25 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 26 H 0.04 0.72 8.07 -51.93 -0.42 0.30 16 27 H 0.05 0.99 8.04 -51.93 -0.42 0.57 16 28 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 29 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.41 4.82 8.06 -40.82 -0.33 4.49 16 33 H 0.22 1.65 8.06 -52.49 -0.42 1.23 16 LS Contribution 303.23 15.07 4.57 4.57 Total: -1.00 -31.88 303.23 -7.48 -39.37 By element: Atomic # 1 Polarization: 2.51 SS G_CDS: -4.01 Total: -1.50 kcal Atomic # 6 Polarization: 8.18 SS G_CDS: -0.76 Total: 7.42 kcal Atomic # 7 Polarization: -61.57 SS G_CDS: 0.20 Total: -61.36 kcal Atomic # 8 Polarization: -8.16 SS G_CDS: 0.09 Total: -8.08 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.03 Total: 16.76 kcal Atomic # 16 Polarization: 5.37 SS G_CDS: -2.55 Total: 2.82 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -31.88 -7.48 -39.37 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234453371.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.722 kcal (2) G-P(sol) polarization free energy of solvation -31.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.366 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds