Wall clock time and date at job start Mon Mar 30 2020 01:24:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36933 * 120.00063 * 2 1 4 4 H 1.07997 * 119.99758 * 203.04922 * 3 2 1 5 5 C 1.38812 * 120.00095 * 23.04353 * 3 2 1 6 6 N 1.31627 * 119.99857 * 12.93734 * 5 3 2 7 7 Si 1.86795 * 120.00132 * 192.94184 * 5 3 2 8 8 H 1.48502 * 109.47224 * 359.97438 * 7 5 3 9 9 H 1.48499 * 109.47261 * 120.00311 * 7 5 3 10 10 H 1.48508 * 109.46956 * 239.99872 * 7 5 3 11 11 C 1.46502 * 119.99790 * 179.97438 * 2 1 3 12 12 C 1.53001 * 109.47018 * 90.00196 * 11 2 1 13 13 C 1.52997 * 109.47154 * 179.97438 * 12 11 2 14 14 N 1.46500 * 109.47296 * 179.97438 * 13 12 11 15 15 C 1.34780 * 120.00079 * 180.02562 * 14 13 12 16 16 O 1.21571 * 119.99936 * 359.97438 * 15 14 13 17 17 C 1.47745 * 119.99854 * 180.27552 * 15 14 13 18 18 C 1.39357 * 124.11560 * 179.44834 * 17 15 14 19 19 N 1.30089 * 112.14279 * 179.77868 * 18 17 15 20 20 S 1.55928 * 108.75757 * 0.46852 * 19 18 17 21 21 N 1.31489 * 124.11755 * 359.74728 * 17 15 14 22 22 H 1.09004 * 109.47008 * 275.11917 * 1 2 3 23 23 H 1.09001 * 109.47537 * 35.12372 * 1 2 3 24 24 H 1.08997 * 109.47106 * 155.12902 * 1 2 3 25 25 H 0.97000 * 119.99802 * 179.97438 * 6 5 3 26 26 H 1.08996 * 109.47421 * 329.99849 * 11 2 1 27 27 H 1.09004 * 109.46946 * 209.99859 * 11 2 1 28 28 H 1.08996 * 109.47308 * 59.99584 * 12 11 2 29 29 H 1.09004 * 109.46987 * 299.99638 * 12 11 2 30 30 H 1.09005 * 109.46978 * 60.00004 * 13 12 11 31 31 H 1.08997 * 109.47337 * 300.00191 * 13 12 11 32 32 H 0.96999 * 120.00147 * 359.97438 * 14 13 12 33 33 H 1.07992 * 123.92516 * 359.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1650 1.2231 -0.3662 5 6 1.5387 2.3401 0.4706 6 7 0.4118 2.2597 1.1459 7 14 2.3157 4.0073 0.1452 8 1 3.5698 3.8264 -0.6293 9 1 1.3714 4.8506 -0.6308 10 1 2.6241 4.6704 1.4378 11 6 2.1975 -1.2688 0.0006 12 6 2.4525 -1.7111 -1.4418 13 6 3.2180 -3.0358 -1.4412 14 7 3.4616 -3.4596 -2.8222 15 6 4.1241 -4.6073 -3.0680 16 8 4.5198 -5.2907 -2.1437 17 6 4.3751 -5.0316 -4.4608 18 6 5.0591 -6.1937 -4.8126 19 7 5.1424 -6.3422 -6.1023 20 16 4.4410 -5.1328 -6.7926 21 7 3.9852 -4.3559 -5.5192 22 1 -0.3633 0.0917 1.0236 23 1 -0.3634 0.8405 -0.5912 24 1 -0.3633 -0.9323 -0.4322 25 1 -0.0149 3.0662 1.4751 26 1 1.6084 -2.0282 0.5147 27 1 3.1499 -1.1382 0.5143 28 1 3.0415 -0.9517 -1.9559 29 1 1.5000 -1.8416 -1.9555 30 1 2.6292 -3.7954 -0.9269 31 1 4.1704 -2.9049 -0.9275 32 1 3.1456 -2.9146 -3.5597 33 1 5.4693 -6.8915 -4.0977 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001234453371.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:26 Heat of formation + Delta-G solvation = 19.173254 kcal Electronic energy + Delta-G solvation = -17563.170704 eV Core-core repulsion = 14557.940483 eV Total energy + Delta-G solvation = -3005.230221 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.089 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.16382 -40.16985 -37.94848 -36.27951 -34.74509 -33.68350 -31.68392 -28.76403 -27.92108 -26.88988 -24.42834 -23.14061 -22.16876 -21.27884 -20.38392 -18.79013 -18.70638 -17.25660 -17.17416 -16.73234 -16.42842 -16.27121 -15.53033 -15.36434 -14.85219 -14.63093 -14.49940 -13.39554 -13.28733 -13.02571 -12.81704 -12.63534 -12.56702 -12.45317 -12.28982 -12.26493 -12.10151 -12.05943 -11.82828 -11.47078 -11.28625 -10.63455 -10.35126 -10.06633 -8.76487 -7.81422 -5.30917 -0.66410 0.34272 0.44947 0.62825 1.46989 1.48271 1.58653 1.98318 2.01079 2.52451 3.31814 3.40001 3.66205 3.69034 4.03288 4.13313 4.27786 4.47909 4.49127 4.67957 4.79753 4.87417 4.93832 5.22742 5.28885 5.30001 5.38294 5.52376 5.65440 5.72947 6.34148 6.37793 6.96810 7.16974 7.89405 8.32775 9.21818 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.031881 B = 0.003141 C = 0.003005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.067435 B = 8912.806159 C = 9316.958981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.175 3.825 2 N -0.621 5.621 3 C -0.261 4.261 4 H 0.072 0.928 5 C -0.056 4.056 6 N -0.940 5.940 7 Si 0.968 3.032 8 H -0.265 1.265 9 H -0.291 1.291 10 H -0.293 1.293 11 C 0.150 3.850 12 C -0.130 4.130 13 C 0.130 3.870 14 N -0.700 5.700 15 C 0.601 3.399 16 O -0.555 6.555 17 C -0.005 4.005 18 C 0.090 3.910 19 N -0.599 5.599 20 S 0.797 5.203 21 N -0.567 5.567 22 H 0.004 0.996 23 H 0.014 0.986 24 H 0.033 0.967 25 H 0.247 0.753 26 H 0.052 0.948 27 H 0.046 0.954 28 H 0.057 0.943 29 H 0.063 0.937 30 H 0.074 0.926 31 H 0.069 0.931 32 H 0.415 0.585 33 H 0.226 0.774 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.436 -15.949 -16.617 24.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.345 5.345 3 C -0.392 4.392 4 H 0.090 0.910 5 C -0.251 4.251 6 N -0.587 5.587 7 Si 0.797 3.203 8 H -0.190 1.190 9 H -0.218 1.218 10 H -0.220 1.220 11 C 0.024 3.976 12 C -0.170 4.170 13 C 0.007 3.993 14 N -0.351 5.351 15 C 0.382 3.618 16 O -0.433 6.433 17 C -0.178 4.178 18 C -0.102 4.102 19 N -0.441 5.441 20 S 0.838 5.162 21 N -0.419 5.419 22 H 0.022 0.978 23 H 0.032 0.968 24 H 0.052 0.948 25 H 0.057 0.943 26 H 0.071 0.929 27 H 0.065 0.935 28 H 0.076 0.924 29 H 0.082 0.918 30 H 0.092 0.908 31 H 0.087 0.913 32 H 0.252 0.748 33 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 7.369 -15.881 -17.898 25.037 hybrid contribution 0.126 1.018 1.601 1.901 sum 7.495 -14.863 -16.297 23.295 Atomic orbital electron populations 1.20548 0.82870 0.95974 0.97618 1.44165 1.02145 1.01815 1.86350 1.19576 0.98495 0.86794 1.34298 0.90997 1.25816 0.98689 1.01969 0.98630 1.70247 1.20925 1.27497 1.40078 0.85185 0.78026 0.80047 0.77073 1.18972 1.21831 1.22028 1.20782 0.95916 0.86892 0.94018 1.22185 0.99861 0.94844 1.00158 1.21349 1.00424 0.96101 0.81472 1.45881 1.56034 1.22819 1.10320 1.16968 0.78186 0.81247 0.85378 1.90816 1.52862 1.55058 1.44600 1.22269 1.05433 0.96200 0.93913 1.23878 0.97812 0.97306 0.91213 1.72192 1.27019 1.31821 1.13030 1.78815 1.28018 0.96388 1.12935 1.72272 1.26293 1.36210 1.07122 0.97811 0.96752 0.94828 0.94340 0.92924 0.93524 0.92399 0.91788 0.90770 0.91278 0.74828 0.75788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 8.61 8.98 127.77 1.15 9.75 16 2 N -0.62 -30.77 2.92 -726.93 -2.12 -32.90 16 3 C -0.26 -14.24 9.65 84.03 0.81 -13.43 16 4 H 0.07 3.78 7.86 -2.91 -0.02 3.76 16 5 C -0.06 -3.16 5.10 84.86 0.43 -2.72 16 6 N -0.94 -55.98 10.71 21.65 0.23 -55.75 16 7 Si 0.97 44.97 29.57 68.60 2.03 47.00 16 8 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 9 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 10 H -0.29 -13.65 7.11 99.48 0.71 -12.95 16 11 C 0.15 5.78 5.64 86.38 0.49 6.26 16 12 C -0.13 -4.01 5.65 30.59 0.17 -3.83 16 13 C 0.13 3.42 5.67 86.38 0.49 3.91 16 14 N -0.70 -16.93 5.55 -466.06 -2.59 -19.52 16 15 C 0.60 15.17 7.82 86.76 0.68 15.85 16 16 O -0.56 -16.82 16.81 -3.94 -0.07 -16.89 16 17 C -0.01 -0.11 6.81 41.98 0.29 0.18 16 18 C 0.09 1.58 11.22 85.22 0.96 2.54 16 19 N -0.60 -9.90 11.41 -92.43 -1.05 -10.95 16 20 S 0.80 9.87 23.69 -56.49 -1.34 8.53 16 21 N -0.57 -10.44 11.00 -80.57 -0.89 -11.32 16 22 H 0.00 0.20 7.34 -2.38 -0.02 0.18 16 23 H 0.01 0.74 7.34 -2.39 -0.02 0.72 16 24 H 0.03 1.37 8.03 -2.39 -0.02 1.35 16 25 H 0.25 14.28 8.31 -92.71 -0.77 13.50 16 26 H 0.05 1.87 8.07 -2.39 -0.02 1.85 16 27 H 0.05 1.81 8.04 -2.38 -0.02 1.79 16 28 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 29 H 0.06 1.95 8.14 -2.38 -0.02 1.93 16 30 H 0.07 1.92 8.14 -2.38 -0.02 1.90 16 31 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.42 9.13 8.06 -92.71 -0.75 8.38 16 33 H 0.23 3.21 8.06 -2.91 -0.02 3.18 16 Total: -1.00 -67.70 303.23 0.05 -67.65 By element: Atomic # 1 Polarization: 5.24 SS G_CDS: 0.39 Total: 5.63 kcal Atomic # 6 Polarization: 13.05 SS G_CDS: 5.46 Total: 18.51 kcal Atomic # 7 Polarization: -124.01 SS G_CDS: -6.42 Total: -130.43 kcal Atomic # 8 Polarization: -16.82 SS G_CDS: -0.07 Total: -16.89 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.00 kcal Atomic # 16 Polarization: 9.87 SS G_CDS: -1.34 Total: 8.53 kcal Total: -67.70 0.05 -67.65 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234453371.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.825 kcal (2) G-P(sol) polarization free energy of solvation -67.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.652 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds