Wall clock time and date at job start Mon Mar 30 2020 01:24:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36932 * 119.99629 * 2 1 4 4 H 1.07999 * 120.00257 * 322.03415 * 3 2 1 5 5 C 1.38813 * 120.00296 * 142.03403 * 3 2 1 6 6 N 1.31617 * 120.00146 * 157.01389 * 5 3 2 7 7 Si 1.86800 * 119.99649 * 337.02398 * 5 3 2 8 8 H 1.48495 * 109.47540 * 95.67828 * 7 5 3 9 9 H 1.48510 * 109.47029 * 215.67667 * 7 5 3 10 10 H 1.48497 * 109.47105 * 335.67256 * 7 5 3 11 11 C 1.46495 * 120.00318 * 179.97438 * 2 1 3 12 12 C 1.53003 * 109.46746 * 90.00130 * 11 2 1 13 13 C 1.53004 * 109.47004 * 180.02562 * 12 11 2 14 14 N 1.46496 * 109.47429 * 180.02562 * 13 12 11 15 15 C 1.34771 * 120.00290 * 180.27563 * 14 13 12 16 16 O 1.21622 * 120.00106 * 359.72005 * 15 14 13 17 17 C 1.47171 * 120.00166 * 179.72149 * 15 14 13 18 18 C 1.38247 * 128.47697 * 179.97438 * 17 15 14 19 19 N 1.31238 * 111.88758 * 180.02562 * 18 17 15 20 20 N 1.27339 * 120.04079 * 359.97438 * 19 18 17 21 21 S 1.56636 * 109.73823 * 359.69877 * 20 19 18 22 22 H 1.09010 * 109.47341 * 265.65037 * 1 2 3 23 23 H 1.08995 * 109.47288 * 25.65172 * 1 2 3 24 24 H 1.08999 * 109.46874 * 145.65421 * 1 2 3 25 25 H 0.97004 * 119.99978 * 180.02562 * 6 5 3 26 26 H 1.09008 * 109.47249 * 330.00516 * 11 2 1 27 27 H 1.09002 * 109.47501 * 210.00271 * 11 2 1 28 28 H 1.08992 * 109.47185 * 60.00468 * 12 11 2 29 29 H 1.08998 * 109.47386 * 299.99571 * 12 11 2 30 30 H 1.08998 * 109.47287 * 59.99592 * 13 12 11 31 31 H 1.09002 * 109.47041 * 300.00018 * 13 12 11 32 32 H 0.97006 * 119.99723 * 359.97438 * 14 13 12 33 33 H 1.07999 * 124.05533 * 0.02598 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 1.7810 2.0222 -0.5754 5 6 3.3174 1.3133 0.7395 6 7 4.2042 2.2305 0.4164 7 14 3.6303 0.1825 2.1931 8 1 4.4679 -0.9636 1.7575 9 1 4.3367 0.9339 3.2617 10 1 2.3350 -0.3215 2.7160 11 6 2.1975 -1.2686 0.0006 12 6 2.4525 -1.7109 -1.4418 13 6 3.2171 -3.0362 -1.4413 14 7 3.4618 -3.4594 -2.8223 15 6 4.1192 -4.6099 -3.0681 16 8 4.5137 -5.2944 -2.1434 17 6 4.3597 -5.0381 -4.4554 18 6 5.0081 -6.1733 -4.9052 19 7 5.0383 -6.2326 -6.2159 20 7 4.5055 -5.3062 -6.9083 21 16 3.8815 -4.2280 -5.9587 22 1 -0.3634 -0.0779 1.0248 23 1 -0.3633 0.9263 -0.4448 24 1 -0.3633 -0.8485 -0.5798 25 1 5.0205 2.3193 0.9330 26 1 1.6084 -2.0282 0.5147 27 1 3.1500 -1.1381 0.5144 28 1 3.0416 -0.9515 -1.9559 29 1 1.5002 -1.8415 -1.9556 30 1 2.6277 -3.7954 -0.9272 31 1 4.1695 -2.9060 -0.9273 32 1 3.1469 -2.9136 -3.5598 33 1 5.4382 -6.9214 -4.2558 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001234480553.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:24 Heat of formation + Delta-G solvation = 61.052841 kcal Electronic energy + Delta-G solvation = -17781.155403 eV Core-core repulsion = 14777.741217 eV Total energy + Delta-G solvation = -3003.414186 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.089 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.13706 -39.66885 -36.62229 -34.99849 -32.59421 -31.84862 -30.89468 -28.01365 -26.42795 -25.46841 -23.16128 -21.75949 -21.07742 -20.55659 -19.49360 -17.66224 -16.87312 -16.28021 -16.09154 -15.69843 -15.14491 -15.06113 -14.45262 -14.07907 -13.63100 -13.31128 -13.02730 -12.82290 -12.34431 -12.22408 -11.78875 -11.48722 -11.31824 -11.00067 -10.67254 -10.61155 -10.49405 -10.42749 -10.31250 -10.18096 -9.86218 -9.60122 -9.23198 -8.57695 -6.89777 -6.07159 -3.48865 -0.60043 0.46752 1.14039 1.65223 2.73908 2.79130 3.26317 3.43416 3.48381 3.69169 4.35736 4.46322 4.46549 4.84794 5.24142 5.27504 5.34591 5.49985 5.69661 5.92257 5.95424 6.20228 6.23468 6.27582 6.51614 6.65478 6.65508 6.81930 7.15235 7.30957 7.82254 7.98395 8.30719 8.91347 9.63833 10.04709 11.08296 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.028330 B = 0.003887 C = 0.003789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.128073 B = 7202.410224 C = 7387.453179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.124 3.876 2 N -0.612 5.612 3 C -0.275 4.275 4 H 0.079 0.921 5 C 0.038 3.962 6 N -0.897 5.897 7 Si 0.875 3.125 8 H -0.284 1.284 9 H -0.300 1.300 10 H -0.269 1.269 11 C 0.143 3.857 12 C -0.148 4.148 13 C 0.117 3.883 14 N -0.713 5.713 15 C 0.596 3.404 16 O -0.518 6.518 17 C -0.282 4.282 18 C 0.072 3.928 19 N -0.252 5.252 20 N -0.259 5.259 21 S 0.426 5.574 22 H 0.007 0.993 23 H 0.045 0.955 24 H 0.027 0.973 25 H 0.264 0.736 26 H 0.042 0.958 27 H 0.056 0.944 28 H 0.078 0.922 29 H 0.061 0.939 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.400 0.600 33 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.297 -13.497 -10.460 17.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.021 4.021 2 N -0.335 5.335 3 C -0.403 4.403 4 H 0.096 0.904 5 C -0.163 4.163 6 N -0.538 5.538 7 Si 0.705 3.295 8 H -0.212 1.212 9 H -0.228 1.228 10 H -0.194 1.194 11 C 0.016 3.984 12 C -0.189 4.189 13 C -0.006 4.006 14 N -0.364 5.364 15 C 0.379 3.621 16 O -0.395 6.395 17 C -0.424 4.424 18 C -0.095 4.095 19 N -0.117 5.117 20 N -0.240 5.240 21 S 0.561 5.439 22 H 0.025 0.975 23 H 0.064 0.936 24 H 0.045 0.955 25 H 0.074 0.926 26 H 0.060 0.940 27 H 0.074 0.926 28 H 0.097 0.903 29 H 0.080 0.920 30 H 0.089 0.911 31 H 0.092 0.908 32 H 0.235 0.765 33 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -2.202 -13.345 -11.594 17.815 hybrid contribution 0.590 -0.911 1.780 2.084 sum -1.612 -14.256 -9.814 17.382 Atomic orbital electron populations 1.21090 0.84515 0.99043 0.97470 1.44032 1.00818 1.01937 1.86755 1.18794 1.06160 0.90875 1.24499 0.90377 1.25477 0.96793 0.96426 0.97606 1.69877 1.08434 1.36126 1.39377 0.86962 0.78055 0.80077 0.84401 1.21152 1.22768 1.19416 1.21034 0.96686 0.87939 0.92759 1.22441 0.99671 0.94328 1.02439 1.21636 1.01243 0.97299 0.80417 1.46037 1.57168 1.22485 1.10707 1.16511 0.78885 0.81692 0.85033 1.90862 1.50820 1.54084 1.43700 1.28167 1.11006 1.02318 1.00875 1.24483 0.97321 0.97461 0.90259 1.70706 1.16595 1.18487 1.05890 1.78872 1.14501 1.03929 1.26689 1.82700 1.42236 1.27357 0.91611 0.97498 0.93607 0.95470 0.92622 0.94009 0.92631 0.90288 0.91991 0.91138 0.90844 0.76515 0.76736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 2.34 10.70 59.85 0.64 2.98 16 2 N -0.61 -13.84 2.47 -181.12 -0.45 -14.29 16 3 C -0.27 -7.40 9.88 -15.06 -0.15 -7.55 16 4 H 0.08 2.27 8.06 -52.49 -0.42 1.85 16 5 C 0.04 1.06 5.29 -17.43 -0.09 0.97 16 6 N -0.90 -26.53 13.97 55.49 0.78 -25.76 16 7 Si 0.88 21.58 25.10 -169.99 -4.27 17.31 16 8 H -0.28 -6.73 6.68 56.52 0.38 -6.35 16 9 H -0.30 -7.54 7.11 56.52 0.40 -7.14 16 10 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 11 C 0.14 2.82 4.53 -4.04 -0.02 2.81 16 12 C -0.15 -2.37 5.65 -26.73 -0.15 -2.52 16 13 C 0.12 1.65 5.67 -4.04 -0.02 1.63 16 14 N -0.71 -8.44 5.55 -61.47 -0.34 -8.78 16 15 C 0.60 7.54 7.80 -12.64 -0.10 7.44 16 16 O -0.52 -8.26 16.98 5.26 0.09 -8.17 16 17 C -0.28 -2.90 6.81 -35.95 -0.25 -3.15 16 18 C 0.07 0.71 11.55 -17.80 -0.21 0.51 16 19 N -0.25 -2.86 11.54 30.36 0.35 -2.51 16 20 N -0.26 -2.84 12.51 60.35 0.75 -2.08 16 21 S 0.43 3.57 23.05 -107.50 -2.48 1.10 16 22 H 0.01 0.13 8.14 -51.92 -0.42 -0.29 16 23 H 0.05 0.85 8.00 -51.93 -0.42 0.43 16 24 H 0.03 0.43 8.10 -51.93 -0.42 0.01 16 25 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 26 H 0.04 0.74 8.07 -51.92 -0.42 0.32 16 27 H 0.06 1.23 3.38 -51.93 -0.18 1.06 16 28 H 0.08 1.41 8.14 -51.93 -0.42 0.98 16 29 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 31 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.40 3.76 7.90 -40.82 -0.32 3.44 16 33 H 0.22 1.67 8.06 -52.49 -0.42 1.25 16 LS Contribution 300.55 15.07 4.53 4.53 Total: -1.00 -32.10 300.55 -5.25 -37.35 By element: Atomic # 1 Polarization: 2.06 SS G_CDS: -3.87 Total: -1.82 kcal Atomic # 6 Polarization: 3.46 SS G_CDS: -0.34 Total: 3.12 kcal Atomic # 7 Polarization: -54.51 SS G_CDS: 1.09 Total: -53.42 kcal Atomic # 8 Polarization: -8.26 SS G_CDS: 0.09 Total: -8.17 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -4.27 Total: 17.31 kcal Atomic # 16 Polarization: 3.57 SS G_CDS: -2.48 Total: 1.10 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -32.10 -5.25 -37.35 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234480553.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.405 kcal (2) G-P(sol) polarization free energy of solvation -32.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.353 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds