Wall clock time and date at job start Mon Mar 30 2020 01:24:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35692 * 117.00349 * 2 1 4 4 N 1.32249 * 119.69405 * 0.02562 * 3 2 1 5 5 C 1.31945 * 121.66713 * 180.02562 * 4 3 2 6 6 C 1.38079 * 120.85559 * 359.95246 * 5 4 3 7 7 C 1.38788 * 119.29749 * 0.02562 * 6 5 4 8 8 C 1.50695 * 120.76462 * 179.97438 * 7 6 5 9 9 N 1.46907 * 109.47191 * 260.02136 * 8 7 6 10 10 C 1.46901 * 110.99851 * 293.95664 * 9 8 7 11 11 C 1.46895 * 111.00393 * 169.99609 * 9 8 7 12 12 C 1.50695 * 109.47378 * 189.99882 * 11 9 8 13 13 H 1.07998 * 119.99849 * 0.02562 * 12 11 9 14 14 C 1.37877 * 120.00272 * 180.02562 * 12 11 9 15 15 N 1.31516 * 119.99811 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 120.00208 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.47154 * 59.99774 * 16 14 12 18 18 H 1.48502 * 109.47370 * 180.02562 * 16 14 12 19 19 H 1.48506 * 109.46897 * 299.99821 * 16 14 12 20 20 C 1.38505 * 118.47441 * 0.02562 * 7 6 5 21 21 Cl 1.73605 * 120.45546 * 179.72739 * 20 7 6 22 22 H 1.09009 * 109.47239 * 300.00015 * 1 2 3 23 23 H 1.09000 * 109.47236 * 59.99812 * 1 2 3 24 24 H 1.08996 * 109.47730 * 179.97438 * 1 2 3 25 25 H 1.08003 * 119.57582 * 179.97438 * 5 4 3 26 26 H 1.07997 * 120.35233 * 180.02562 * 6 5 4 27 27 H 1.09002 * 109.47653 * 20.01902 * 8 7 6 28 28 H 1.09000 * 109.47471 * 140.02349 * 8 7 6 29 29 H 1.08997 * 109.47348 * 59.99261 * 10 9 8 30 30 H 1.09004 * 109.46791 * 179.97438 * 10 9 8 31 31 H 1.09007 * 109.46833 * 299.99595 * 10 9 8 32 32 H 1.09003 * 109.47313 * 310.00512 * 11 9 8 33 33 H 1.09007 * 109.46980 * 70.00349 * 11 9 8 34 34 H 0.97002 * 120.00022 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2090 0.0000 4 7 1.3189 2.3143 0.0005 5 6 1.8772 3.5098 0.0000 6 6 3.2509 3.6500 -0.0001 7 6 4.0493 2.5148 -0.0002 8 6 5.5519 2.6293 -0.0008 9 7 6.0579 2.4269 -1.3651 10 6 5.8119 1.0517 -1.8192 11 6 7.4852 2.7630 -1.4526 12 6 7.9092 2.7816 -2.8985 13 1 7.1902 2.5658 -3.6749 14 6 9.2151 3.0740 -3.2304 15 7 10.0908 3.3363 -2.2849 16 14 9.7405 3.0978 -5.0227 17 1 8.9471 4.1153 -5.7577 18 1 11.1838 3.4361 -5.1111 19 1 9.5086 1.7600 -5.6243 20 6 3.4334 1.2742 -0.0007 21 17 4.3825 -0.1794 -0.0080 22 1 -0.3634 0.5139 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 1.2517 4.3903 0.0001 26 1 3.6992 4.6325 0.0000 27 1 5.8411 3.6198 0.3506 28 1 5.9744 1.8719 0.6594 29 1 4.7404 0.8523 -1.8105 30 1 6.1959 0.9294 -2.8320 31 1 6.3168 0.3530 -1.1519 32 1 7.6550 3.7452 -1.0115 33 1 8.0679 2.0165 -0.9127 34 1 11.0097 3.5417 -2.5183 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235830384.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:49 Heat of formation + Delta-G solvation = 12.238887 kcal Electronic energy + Delta-G solvation = -18464.433652 eV Core-core repulsion = 15424.566276 eV Total energy + Delta-G solvation = -3039.867376 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.088 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.74023 -38.26637 -36.87602 -36.09717 -33.10291 -31.98128 -30.63894 -27.87622 -27.07458 -26.86319 -24.17512 -23.39337 -21.79797 -20.31332 -17.91295 -17.36026 -16.44461 -16.30993 -16.15836 -15.05193 -14.86653 -14.65876 -14.34637 -13.76750 -13.63063 -13.33558 -12.58157 -12.19195 -12.08787 -12.00835 -11.85343 -11.47809 -11.29374 -11.19279 -10.93123 -10.74602 -10.53697 -10.00658 -9.90434 -9.71019 -9.32242 -9.16189 -8.43578 -8.39029 -7.26938 -6.03258 -4.04378 0.96746 1.20484 2.22249 2.92707 3.34140 3.37806 3.41106 3.62978 4.24982 4.42768 4.71290 4.86054 5.02662 5.13126 5.17859 5.20326 5.31681 5.33852 5.48126 5.68636 5.78958 6.02078 6.23079 6.28466 6.31631 6.46212 6.84239 7.07084 7.23811 7.31644 7.68844 7.77036 8.03386 8.15291 8.50492 9.02614 9.59608 11.07659 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.031022 B = 0.004664 C = 0.004473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.378956 B = 6002.446166 C = 6258.249448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.299 6.299 3 C 0.327 3.673 4 N -0.535 5.535 5 C 0.137 3.863 6 C -0.182 4.182 7 C 0.025 3.975 8 C 0.083 3.917 9 N -0.530 5.530 10 C 0.025 3.975 11 C 0.193 3.807 12 C -0.507 4.507 13 H 0.063 0.937 14 C 0.056 3.944 15 N -0.899 5.899 16 Si 0.898 3.102 17 H -0.276 1.276 18 H -0.288 1.288 19 H -0.277 1.277 20 C -0.107 4.107 21 Cl -0.037 7.037 22 H 0.058 0.942 23 H 0.059 0.941 24 H 0.095 0.905 25 H 0.165 0.835 26 H 0.148 0.852 27 H 0.088 0.912 28 H 0.046 0.954 29 H 0.055 0.945 30 H 0.069 0.931 31 H 0.019 0.981 32 H 0.031 0.969 33 H -0.007 1.007 34 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.058 -3.074 6.896 18.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.206 6.206 3 C 0.147 3.853 4 N -0.260 5.260 5 C -0.018 4.018 6 C -0.203 4.203 7 C 0.017 3.983 8 C -0.045 4.045 9 N -0.255 5.255 10 C -0.123 4.123 11 C 0.069 3.931 12 C -0.545 4.545 13 H 0.081 0.919 14 C -0.145 4.145 15 N -0.539 5.539 16 Si 0.726 3.274 17 H -0.201 1.201 18 H -0.213 1.213 19 H -0.203 1.203 20 C -0.137 4.137 21 Cl -0.008 7.008 22 H 0.077 0.923 23 H 0.078 0.922 24 H 0.114 0.886 25 H 0.182 0.818 26 H 0.165 0.835 27 H 0.106 0.894 28 H 0.064 0.936 29 H 0.073 0.927 30 H 0.087 0.913 31 H 0.038 0.962 32 H 0.049 0.951 33 H 0.011 0.989 34 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -17.815 -3.197 6.607 19.268 hybrid contribution 1.548 -0.408 -0.445 1.661 sum -16.268 -3.605 6.162 17.765 Atomic orbital electron populations 1.22858 0.77238 1.02910 1.02404 1.86309 1.22786 1.23852 1.87614 1.19429 0.87543 0.85446 0.92853 1.67419 1.39688 0.98529 1.20330 1.22452 0.92945 0.93544 0.92825 1.21945 0.93972 0.99532 1.04872 1.20251 0.97877 0.89964 0.90244 1.21132 0.87460 1.02429 0.93479 1.62250 1.21811 1.23889 1.17519 1.22923 0.99712 0.88540 1.01111 1.19766 0.79854 0.95825 0.97685 1.21097 0.94468 1.47001 0.91970 0.91884 1.24971 0.96525 0.95436 0.97591 1.69946 1.03735 1.47953 1.32246 0.86553 0.77315 0.78566 0.84938 1.20147 1.21347 1.20278 1.20801 0.89168 0.89959 1.13812 1.98370 1.70525 1.35450 1.96456 0.92344 0.92250 0.88627 0.81826 0.83455 0.89406 0.93562 0.92680 0.91275 0.96218 0.95096 0.98885 0.92855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.40 10.38 101.05 1.05 1.45 16 2 O -0.30 -4.09 9.95 -18.78 -0.19 -4.28 16 3 C 0.33 4.86 7.49 -17.09 -0.13 4.73 16 4 N -0.53 -7.27 9.22 -13.30 -0.12 -7.39 16 5 C 0.14 1.62 11.17 -17.56 -0.20 1.42 16 6 C -0.18 -2.37 9.77 -39.44 -0.39 -2.76 16 7 C 0.03 0.40 5.18 -104.32 -0.54 -0.14 16 8 C 0.08 1.48 4.98 -4.97 -0.02 1.45 16 9 N -0.53 -11.48 4.74 -245.82 -1.17 -12.65 16 10 C 0.03 0.52 7.50 60.07 0.45 0.97 16 11 C 0.19 4.99 4.72 -4.98 -0.02 4.97 16 12 C -0.51 -14.22 8.46 -34.44 -0.29 -14.51 16 13 H 0.06 1.76 7.12 -52.49 -0.37 1.39 16 14 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 15 N -0.90 -26.57 13.29 55.43 0.74 -25.84 16 16 Si 0.90 21.67 29.54 -169.99 -5.02 16.65 16 17 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 18 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 19 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 20 C -0.11 -1.70 5.28 -39.20 -0.21 -1.91 16 21 Cl -0.04 -0.59 22.34 -51.86 -1.16 -1.75 16 22 H 0.06 0.53 8.10 -51.92 -0.42 0.11 16 23 H 0.06 0.57 8.10 -51.93 -0.42 0.15 16 24 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.16 1.32 8.06 -52.48 -0.42 0.90 16 26 H 0.15 1.63 8.06 -52.49 -0.42 1.21 16 27 H 0.09 1.46 7.83 -51.93 -0.41 1.06 16 28 H 0.05 0.83 7.44 -51.93 -0.39 0.44 16 29 H 0.05 1.04 4.64 -51.93 -0.24 0.80 16 30 H 0.07 1.53 6.76 -51.93 -0.35 1.18 16 31 H 0.02 0.40 6.75 -51.92 -0.35 0.05 16 32 H 0.03 0.83 7.93 -51.93 -0.41 0.42 16 33 H -0.01 -0.18 8.12 -51.92 -0.42 -0.61 16 34 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 296.16 15.07 4.46 4.46 Total: -1.00 -31.07 296.16 -7.04 -38.10 By element: Atomic # 1 Polarization: -0.29 SS G_CDS: -4.19 Total: -4.48 kcal Atomic # 6 Polarization: -2.45 SS G_CDS: -0.39 Total: -2.84 kcal Atomic # 7 Polarization: -45.32 SS G_CDS: -0.55 Total: -45.88 kcal Atomic # 8 Polarization: -4.09 SS G_CDS: -0.19 Total: -4.28 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Atomic # 17 Polarization: -0.59 SS G_CDS: -1.16 Total: -1.75 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -31.07 -7.04 -38.10 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235830384.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.342 kcal (2) G-P(sol) polarization free energy of solvation -31.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.103 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds