Wall clock time and date at job start Mon Mar 30 2020 01:24:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35675 * 117.00608 * 2 1 4 4 N 1.32293 * 119.67133 * 359.97438 * 3 2 1 5 5 C 1.32030 * 121.62801 * 179.97438 * 4 3 2 6 6 Cl 1.73598 * 119.59798 * 179.97438 * 5 4 3 7 7 C 1.38260 * 120.80020 * 0.02587 * 5 4 3 8 8 C 1.38724 * 119.27489 * 359.70066 * 7 5 4 9 9 C 1.38460 * 118.49792 * 0.55792 * 8 7 5 10 10 C 1.50704 * 120.42425 * 179.71063 * 9 8 7 11 11 N 1.46893 * 109.47295 * 259.72519 * 10 9 8 12 12 C 1.46901 * 111.00360 * 293.95434 * 11 10 9 13 13 C 1.46906 * 110.99932 * 170.00151 * 11 10 9 14 14 C 1.50703 * 109.47109 * 190.00029 * 13 11 10 15 15 H 1.08005 * 119.99876 * 0.02562 * 14 13 11 16 16 C 1.37875 * 119.99989 * 180.02562 * 14 13 11 17 17 N 1.31518 * 119.99944 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99979 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47418 * 89.99710 * 18 16 14 20 20 H 1.48498 * 109.47091 * 209.99770 * 18 16 14 21 21 H 1.48498 * 109.46997 * 329.99580 * 18 16 14 22 22 H 1.08999 * 109.46793 * 300.00531 * 1 2 3 23 23 H 1.09008 * 109.46731 * 59.99652 * 1 2 3 24 24 H 1.08994 * 109.47467 * 179.97438 * 1 2 3 25 25 H 1.08008 * 120.36308 * 179.97438 * 7 5 4 26 26 H 1.08003 * 120.75249 * 180.29235 * 8 7 5 27 27 H 1.09004 * 109.46439 * 139.72505 * 10 9 8 28 28 H 1.08994 * 109.47235 * 19.73307 * 10 9 8 29 29 H 1.08995 * 109.47046 * 296.04847 * 12 11 10 30 30 H 1.09008 * 109.46903 * 56.04730 * 12 11 10 31 31 H 1.08999 * 109.47457 * 176.04446 * 12 11 10 32 32 H 1.08992 * 109.47459 * 309.99948 * 13 11 10 33 33 H 1.09004 * 109.47040 * 70.00098 * 13 11 10 34 34 H 0.96997 * 119.99752 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2088 0.0000 4 7 1.3183 2.3142 -0.0005 5 6 1.8773 3.5104 0.0000 6 17 0.8729 4.9262 -0.0014 7 6 3.2530 3.6489 0.0005 8 6 4.0492 2.5129 0.0068 9 6 3.4319 1.2735 0.0006 10 6 4.2550 0.0111 0.0005 11 7 4.3214 -0.5301 -1.3634 12 6 2.9975 -0.9760 -1.8180 13 6 5.3024 -1.6202 -1.4501 14 6 5.5233 -1.9834 -2.8959 15 1 4.9887 -1.4568 -3.6728 16 6 6.4078 -2.9879 -3.2270 17 7 7.0592 -3.6287 -2.2811 18 14 6.6821 -3.4376 -5.0192 19 1 7.7913 -2.6187 -5.5709 20 1 7.0320 -4.8772 -5.1203 21 1 5.4411 -3.1744 -5.7911 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 3.7028 4.6308 0.0005 26 1 5.1262 2.5934 0.0121 27 1 3.7936 -0.7233 0.6608 28 1 5.2621 0.2339 0.3525 29 1 2.6581 -1.8022 -1.1933 30 1 2.2905 -0.1497 -1.7434 31 1 3.0617 -1.3068 -2.8546 32 1 6.2450 -1.2967 -1.0088 33 1 4.9279 -2.4898 -0.9101 34 1 7.6817 -4.3351 -2.5140 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001237241194.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:44 Heat of formation + Delta-G solvation = 3.008834 kcal Electronic energy + Delta-G solvation = -18503.156720 eV Core-core repulsion = 15462.889099 eV Total energy + Delta-G solvation = -3040.267621 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.088 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.86751 -38.03131 -36.82488 -36.35541 -33.09721 -32.19747 -30.85566 -27.54115 -27.23192 -26.45486 -24.21327 -23.10997 -21.97982 -20.17492 -18.46268 -17.42064 -16.50886 -16.27422 -15.71153 -14.87348 -14.62105 -14.44993 -14.05959 -13.95907 -13.72355 -13.35358 -12.91830 -12.04085 -11.94291 -11.91967 -11.71167 -11.45179 -11.37179 -11.09256 -10.99954 -10.75521 -10.63821 -10.25892 -9.98796 -9.78237 -9.70359 -9.21628 -8.44867 -8.33843 -7.22856 -6.02269 -4.03230 0.94152 1.19984 1.67135 3.10923 3.32722 3.38550 3.42453 3.58991 4.38820 4.44016 4.81718 4.87565 5.06903 5.22262 5.27298 5.31049 5.33297 5.37549 5.60692 5.67814 5.88957 6.08596 6.27628 6.31734 6.34084 6.53369 6.86831 7.14593 7.27555 7.35289 7.58850 7.80146 8.07386 8.20224 8.54499 9.04371 9.60855 11.08663 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.029637 B = 0.004267 C = 0.004093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.542399 B = 6560.223303 C = 6838.560874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.289 6.289 3 C 0.344 3.656 4 N -0.539 5.539 5 C 0.202 3.798 6 Cl -0.040 7.040 7 C -0.189 4.189 8 C -0.020 4.020 9 C -0.122 4.122 10 C 0.100 3.900 11 N -0.535 5.535 12 C 0.040 3.960 13 C 0.193 3.807 14 C -0.505 4.505 15 H 0.063 0.937 16 C 0.055 3.945 17 N -0.899 5.899 18 Si 0.898 3.102 19 H -0.280 1.280 20 H -0.287 1.287 21 H -0.274 1.274 22 H 0.056 0.944 23 H 0.059 0.941 24 H 0.096 0.904 25 H 0.145 0.855 26 H 0.154 0.846 27 H 0.041 0.959 28 H 0.081 0.919 29 H 0.016 0.984 30 H 0.050 0.950 31 H 0.066 0.934 32 H 0.030 0.970 33 H -0.007 1.007 34 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.614 13.073 6.923 18.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.195 6.195 3 C 0.164 3.836 4 N -0.265 5.265 5 C 0.040 3.960 6 Cl -0.012 7.012 7 C -0.210 4.210 8 C -0.046 4.046 9 C -0.125 4.125 10 C -0.029 4.029 11 N -0.259 5.259 12 C -0.108 4.108 13 C 0.068 3.932 14 C -0.544 4.544 15 H 0.081 0.919 16 C -0.146 4.146 17 N -0.539 5.539 18 Si 0.726 3.274 19 H -0.206 1.206 20 H -0.213 1.213 21 H -0.199 1.199 22 H 0.075 0.925 23 H 0.078 0.922 24 H 0.115 0.885 25 H 0.163 0.837 26 H 0.171 0.829 27 H 0.059 0.941 28 H 0.099 0.901 29 H 0.035 0.965 30 H 0.069 0.931 31 H 0.085 0.915 32 H 0.048 0.952 33 H 0.010 0.990 34 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -11.225 13.051 6.632 18.448 hybrid contribution 0.358 -0.646 -0.438 0.858 sum -10.867 12.406 6.195 17.617 Atomic orbital electron populations 1.22865 0.77699 1.03078 1.02254 1.86543 1.22515 1.23415 1.87068 1.19347 0.88774 0.83560 0.91876 1.66441 1.41507 0.97801 1.20731 1.21084 0.88514 0.87151 0.99292 1.98391 1.70990 1.35242 1.96558 1.21642 0.91536 1.00870 1.06968 1.21375 1.01027 0.89770 0.92447 1.20200 0.90921 0.97725 1.03696 1.20852 0.97932 0.91296 0.92777 1.62241 1.08182 1.37155 1.18359 1.22370 0.89932 0.97800 1.00717 1.19759 0.89683 0.86225 0.97549 1.21150 1.23906 1.17265 0.92069 0.91911 1.24977 0.95881 0.96189 0.97541 1.69958 1.27752 1.24078 1.32127 0.86501 0.78547 0.77415 0.84968 1.20628 1.21332 1.19892 0.92510 0.92245 0.88516 0.83696 0.82856 0.94060 0.90072 0.96497 0.93139 0.91516 0.95191 0.98964 0.92944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.42 10.38 101.05 1.05 1.47 16 2 O -0.29 -4.44 6.62 -18.73 -0.12 -4.56 16 3 C 0.34 5.40 6.24 -17.13 -0.11 5.29 16 4 N -0.54 -8.05 9.19 -10.44 -0.10 -8.14 16 5 C 0.20 2.70 7.27 -17.46 -0.13 2.57 16 6 Cl -0.04 -0.46 29.11 -51.86 -1.51 -1.97 16 7 C -0.19 -2.23 9.87 -39.39 -0.39 -2.62 16 8 C -0.02 -0.26 9.81 -39.32 -0.39 -0.65 16 9 C -0.12 -1.91 5.18 -104.32 -0.54 -2.45 16 10 C 0.10 1.79 5.00 -4.98 -0.02 1.76 16 11 N -0.53 -11.61 4.74 -245.82 -1.17 -12.78 16 12 C 0.04 0.82 7.92 60.07 0.48 1.30 16 13 C 0.19 4.99 4.72 -4.97 -0.02 4.97 16 14 C -0.51 -14.19 8.51 -34.44 -0.29 -14.48 16 15 H 0.06 1.76 7.10 -52.48 -0.37 1.39 16 16 C 0.06 1.56 5.46 -17.82 -0.10 1.47 16 17 N -0.90 -26.59 13.29 55.43 0.74 -25.86 16 18 Si 0.90 21.64 29.54 -169.99 -5.02 16.62 16 19 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 20 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 21 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 22 H 0.06 0.62 8.10 -51.93 -0.42 0.20 16 23 H 0.06 0.69 8.10 -51.92 -0.42 0.27 16 24 H 0.10 0.92 8.14 -51.93 -0.42 0.49 16 25 H 0.15 1.29 8.06 -52.48 -0.42 0.87 16 26 H 0.15 1.64 8.06 -52.48 -0.42 1.22 16 27 H 0.04 0.75 7.85 -51.93 -0.41 0.34 16 28 H 0.08 1.36 7.82 -51.93 -0.41 0.95 16 29 H 0.02 0.34 7.93 -51.93 -0.41 -0.07 16 30 H 0.05 0.95 4.62 -51.92 -0.24 0.71 16 31 H 0.07 1.46 6.86 -51.93 -0.36 1.10 16 32 H 0.03 0.81 7.93 -51.93 -0.41 0.40 16 33 H -0.01 -0.21 8.12 -51.93 -0.42 -0.63 16 34 H 0.26 7.29 8.31 -40.82 -0.34 6.96 16 LS Contribution 301.18 15.07 4.54 4.54 Total: -1.00 -30.77 301.18 -7.38 -38.15 By element: Atomic # 1 Polarization: -0.35 SS G_CDS: -4.27 Total: -4.63 kcal Atomic # 6 Polarization: -0.91 SS G_CDS: -0.46 Total: -1.37 kcal Atomic # 7 Polarization: -46.25 SS G_CDS: -0.53 Total: -46.78 kcal Atomic # 8 Polarization: -4.44 SS G_CDS: -0.12 Total: -4.56 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Atomic # 17 Polarization: -0.46 SS G_CDS: -1.51 Total: -1.97 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -30.77 -7.38 -38.15 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237241194.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.154 kcal (2) G-P(sol) polarization free energy of solvation -30.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.145 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds