Wall clock time and date at job start Mon Mar 30 2020 01:24:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35675 * 117.00608 * 2 1 4 4 N 1.32293 * 119.67133 * 359.97438 * 3 2 1 5 5 C 1.32030 * 121.62801 * 179.97438 * 4 3 2 6 6 Cl 1.73598 * 119.59798 * 179.97438 * 5 4 3 7 7 C 1.38260 * 120.80020 * 0.02587 * 5 4 3 8 8 C 1.38724 * 119.27489 * 359.70066 * 7 5 4 9 9 C 1.38460 * 118.49792 * 0.55792 * 8 7 5 10 10 C 1.50704 * 120.42425 * 179.71063 * 9 8 7 11 11 N 1.46893 * 109.47295 * 259.72519 * 10 9 8 12 12 C 1.46901 * 111.00360 * 293.95434 * 11 10 9 13 13 C 1.46906 * 110.99932 * 170.00151 * 11 10 9 14 14 C 1.50703 * 109.47109 * 190.00029 * 13 11 10 15 15 H 1.08005 * 119.99876 * 0.02562 * 14 13 11 16 16 C 1.37875 * 119.99989 * 180.02562 * 14 13 11 17 17 N 1.31518 * 119.99944 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99979 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47418 * 89.99710 * 18 16 14 20 20 H 1.48498 * 109.47091 * 209.99770 * 18 16 14 21 21 H 1.48498 * 109.46997 * 329.99580 * 18 16 14 22 22 H 1.08999 * 109.46793 * 300.00531 * 1 2 3 23 23 H 1.09008 * 109.46731 * 59.99652 * 1 2 3 24 24 H 1.08994 * 109.47467 * 179.97438 * 1 2 3 25 25 H 1.08008 * 120.36308 * 179.97438 * 7 5 4 26 26 H 1.08003 * 120.75249 * 180.29235 * 8 7 5 27 27 H 1.09004 * 109.46439 * 139.72505 * 10 9 8 28 28 H 1.08994 * 109.47235 * 19.73307 * 10 9 8 29 29 H 1.08995 * 109.47046 * 296.04847 * 12 11 10 30 30 H 1.09008 * 109.46903 * 56.04730 * 12 11 10 31 31 H 1.08999 * 109.47457 * 176.04446 * 12 11 10 32 32 H 1.08992 * 109.47459 * 309.99948 * 13 11 10 33 33 H 1.09004 * 109.47040 * 70.00098 * 13 11 10 34 34 H 0.96997 * 119.99752 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2088 0.0000 4 7 1.3183 2.3142 -0.0005 5 6 1.8773 3.5104 0.0000 6 17 0.8729 4.9262 -0.0014 7 6 3.2530 3.6489 0.0005 8 6 4.0492 2.5129 0.0068 9 6 3.4319 1.2735 0.0006 10 6 4.2550 0.0111 0.0005 11 7 4.3214 -0.5301 -1.3634 12 6 2.9975 -0.9760 -1.8180 13 6 5.3024 -1.6202 -1.4501 14 6 5.5233 -1.9834 -2.8959 15 1 4.9887 -1.4568 -3.6728 16 6 6.4078 -2.9879 -3.2270 17 7 7.0592 -3.6287 -2.2811 18 14 6.6821 -3.4376 -5.0192 19 1 7.7913 -2.6187 -5.5709 20 1 7.0320 -4.8772 -5.1203 21 1 5.4411 -3.1744 -5.7911 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 3.7028 4.6308 0.0005 26 1 5.1262 2.5934 0.0121 27 1 3.7936 -0.7233 0.6608 28 1 5.2621 0.2339 0.3525 29 1 2.6581 -1.8022 -1.1933 30 1 2.2905 -0.1497 -1.7434 31 1 3.0617 -1.3068 -2.8546 32 1 6.2450 -1.2967 -1.0088 33 1 4.9279 -2.4898 -0.9101 34 1 7.6817 -4.3351 -2.5140 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001237241194.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:44 Heat of formation + Delta-G solvation = -18.633935 kcal Electronic energy + Delta-G solvation = -18504.095221 eV Core-core repulsion = 15462.889099 eV Total energy + Delta-G solvation = -3041.206122 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.088 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.96783 -39.08947 -38.29612 -37.51827 -34.89563 -33.67807 -32.03882 -29.20659 -28.65190 -27.79190 -25.91255 -24.16058 -23.49261 -21.83613 -19.51975 -18.66734 -18.34306 -17.57889 -16.86953 -16.57878 -16.01553 -15.78932 -15.53771 -15.30816 -14.98893 -14.64751 -14.25984 -13.82804 -13.39132 -13.17522 -13.03221 -12.84139 -12.65137 -12.59718 -12.50016 -12.31976 -12.28162 -11.95901 -11.63906 -11.31788 -10.87347 -10.85056 -10.58928 -9.48154 -8.99932 -8.18542 -6.28160 -0.14394 0.16471 0.67871 1.42733 1.43773 1.54866 2.08365 2.40827 2.50983 3.14139 3.34065 3.49440 3.76395 3.79899 4.08548 4.23559 4.39122 4.40010 4.51619 4.57549 4.71756 4.76687 4.78410 4.81792 5.12311 5.17481 5.23571 5.28847 5.31401 5.66197 6.05423 6.08837 6.30496 6.51615 6.61431 6.87231 7.41251 8.92394 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.029637 B = 0.004267 C = 0.004093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.542399 B = 6560.223303 C = 6838.560874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.310 6.310 3 C 0.332 3.668 4 N -0.550 5.550 5 C 0.193 3.807 6 Cl -0.023 7.023 7 C -0.177 4.177 8 C -0.013 4.013 9 C -0.146 4.146 10 C 0.106 3.894 11 N -0.540 5.540 12 C 0.052 3.948 13 C 0.207 3.793 14 C -0.523 4.523 15 H 0.060 0.940 16 C 0.004 3.996 17 N -0.933 5.933 18 Si 0.967 3.033 19 H -0.272 1.272 20 H -0.282 1.282 21 H -0.267 1.267 22 H 0.062 0.938 23 H 0.057 0.943 24 H 0.116 0.884 25 H 0.180 0.820 26 H 0.177 0.823 27 H 0.032 0.968 28 H 0.089 0.911 29 H 0.011 0.989 30 H 0.070 0.930 31 H 0.047 0.953 32 H 0.013 0.987 33 H -0.037 1.037 34 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.887 14.702 6.301 19.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.217 6.217 3 C 0.153 3.847 4 N -0.277 5.277 5 C 0.030 3.970 6 Cl 0.006 6.994 7 C -0.198 4.198 8 C -0.038 4.038 9 C -0.149 4.149 10 C -0.023 4.023 11 N -0.264 5.264 12 C -0.096 4.096 13 C 0.081 3.919 14 C -0.561 4.561 15 H 0.078 0.922 16 C -0.194 4.194 17 N -0.574 5.574 18 Si 0.792 3.208 19 H -0.197 1.197 20 H -0.208 1.208 21 H -0.192 1.192 22 H 0.080 0.920 23 H 0.076 0.924 24 H 0.135 0.865 25 H 0.197 0.803 26 H 0.194 0.806 27 H 0.051 0.949 28 H 0.107 0.893 29 H 0.029 0.971 30 H 0.088 0.912 31 H 0.066 0.934 32 H 0.031 0.969 33 H -0.020 1.020 34 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -11.521 14.703 6.020 19.625 hybrid contribution 0.368 -1.037 -0.169 1.113 sum -11.153 13.666 5.850 18.584 Atomic orbital electron populations 1.23049 0.76092 1.04489 1.02411 1.86495 1.24251 1.23778 1.87138 1.19438 0.88933 0.83903 0.92462 1.66472 1.41740 0.98174 1.21267 1.21508 0.89613 0.87244 0.98623 1.98399 1.70679 1.33929 1.96403 1.21984 0.90791 1.01990 1.05051 1.21690 1.02327 0.89011 0.90810 1.20074 0.90865 0.97523 1.06471 1.20793 0.98957 0.92205 0.90315 1.62150 1.07924 1.35125 1.21209 1.22254 0.89778 0.98326 0.99241 1.19420 0.89921 0.86365 0.96147 1.21438 1.24091 1.17621 0.92954 0.92230 1.25858 0.95435 0.95952 1.02149 1.70076 1.28312 1.24590 1.34404 0.85415 0.78734 0.77274 0.79387 1.19699 1.20754 1.19170 0.91967 0.92391 0.86549 0.80276 0.80609 0.94945 0.89284 0.97085 0.91153 0.93411 0.96938 1.01976 0.92665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.77 10.38 113.37 1.18 1.95 16 2 O -0.31 -9.44 6.62 -89.93 -0.60 -10.03 16 3 C 0.33 10.16 6.24 84.77 0.53 10.69 16 4 N -0.55 -15.66 9.19 -299.79 -2.76 -18.42 16 5 C 0.19 4.70 7.27 84.67 0.62 5.31 16 6 Cl -0.02 -0.46 29.11 -2.72 -0.08 -0.54 16 7 C -0.18 -3.64 9.87 22.39 0.22 -3.42 16 8 C -0.01 -0.30 9.81 22.44 0.22 -0.08 16 9 C -0.15 -4.42 5.18 -19.67 -0.10 -4.53 16 10 C 0.11 3.79 5.00 85.56 0.43 4.22 16 11 N -0.54 -23.76 4.74 -931.64 -4.42 -28.18 16 12 C 0.05 2.17 7.92 127.69 1.01 3.18 16 13 C 0.21 11.07 4.72 85.56 0.40 11.48 16 14 C -0.52 -29.79 8.51 25.60 0.22 -29.57 16 15 H 0.06 3.37 7.10 -2.91 -0.02 3.35 16 16 C 0.00 0.23 5.46 84.65 0.46 0.70 16 17 N -0.93 -55.91 13.29 21.45 0.28 -55.62 16 18 Si 0.97 44.31 29.54 68.60 2.03 46.34 16 19 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 20 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 21 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 22 H 0.06 1.32 8.10 -2.39 -0.02 1.30 16 23 H 0.06 1.31 8.10 -2.38 -0.02 1.29 16 24 H 0.12 2.10 8.14 -2.39 -0.02 2.08 16 25 H 0.18 2.41 8.06 -2.91 -0.02 2.38 16 26 H 0.18 3.26 8.06 -2.91 -0.02 3.23 16 27 H 0.03 1.21 7.85 -2.39 -0.02 1.19 16 28 H 0.09 2.98 7.82 -2.39 -0.02 2.96 16 29 H 0.01 0.45 7.93 -2.39 -0.02 0.43 16 30 H 0.07 2.64 4.62 -2.38 -0.01 2.63 16 31 H 0.05 2.12 6.86 -2.39 -0.02 2.11 16 32 H 0.01 0.70 7.93 -2.39 -0.02 0.68 16 33 H -0.04 -2.18 8.12 -2.38 -0.02 -2.20 16 34 H 0.26 14.88 8.31 -92.71 -0.77 14.11 16 Total: -1.00 -66.09 301.18 0.75 -65.35 By element: Atomic # 1 Polarization: 0.09 SS G_CDS: 1.10 Total: 1.19 kcal Atomic # 6 Polarization: -5.27 SS G_CDS: 5.18 Total: -0.08 kcal Atomic # 7 Polarization: -95.33 SS G_CDS: -6.89 Total: -102.23 kcal Atomic # 8 Polarization: -9.44 SS G_CDS: -0.60 Total: -10.03 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.34 kcal Atomic # 17 Polarization: -0.46 SS G_CDS: -0.08 Total: -0.54 kcal Total: -66.09 0.75 -65.35 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237241194.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.713 kcal (2) G-P(sol) polarization free energy of solvation -66.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds