Wall clock time and date at job start Mon Mar 30 2020 01:24:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35676 * 117.00047 * 2 1 4 4 C 1.38885 * 119.67873 * 180.02562 * 3 2 1 5 5 C 1.38419 * 119.14440 * 179.72122 * 4 3 2 6 6 C 1.38760 * 118.49786 * 0.49402 * 5 4 3 7 7 C 1.50704 * 120.36351 * 179.78259 * 6 5 4 8 8 N 1.46893 * 109.47295 * 104.71619 * 7 6 5 9 9 C 1.46901 * 111.00360 * 293.95434 * 8 7 6 10 10 C 1.46906 * 110.99932 * 170.00151 * 8 7 6 11 11 C 1.50703 * 109.47109 * 190.00029 * 10 8 7 12 12 H 1.08005 * 119.99876 * 0.02562 * 11 10 8 13 13 C 1.37875 * 119.99989 * 180.02562 * 11 10 8 14 14 N 1.31518 * 119.99944 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 119.99979 * 180.02562 * 13 11 10 16 16 H 1.48493 * 109.47285 * 359.97438 * 15 13 11 17 17 H 1.48504 * 109.47233 * 119.99722 * 15 13 11 18 18 H 1.48500 * 109.46790 * 239.99650 * 15 13 11 19 19 C 1.38221 * 119.27954 * 359.50258 * 6 5 4 20 20 Cl 1.73603 * 119.60211 * 180.23410 * 19 6 5 21 21 N 1.32055 * 120.80028 * 0.25359 * 19 6 5 22 22 H 1.09000 * 109.46702 * 60.00453 * 1 2 3 23 23 H 1.09004 * 109.46999 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.47549 * 300.00723 * 1 2 3 25 25 H 1.08006 * 120.42733 * 359.97265 * 4 3 2 26 26 H 1.08002 * 120.75235 * 180.27101 * 5 4 3 27 27 H 1.09004 * 109.46439 * 344.71605 * 7 6 5 28 28 H 1.08994 * 109.47235 * 224.72406 * 7 6 5 29 29 H 1.08995 * 109.47046 * 296.04847 * 9 8 7 30 30 H 1.09008 * 109.46903 * 56.04730 * 9 8 7 31 31 H 1.08999 * 109.47457 * 176.04446 * 9 8 7 32 32 H 1.08992 * 109.47459 * 309.99948 * 10 8 7 33 33 H 1.09004 * 109.47040 * 70.00098 * 10 8 7 34 34 H 0.96997 * 119.99752 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 6 3.4323 1.2738 -0.0005 5 6 4.0492 2.5129 -0.0064 6 6 3.2526 3.6491 -0.0011 7 6 3.8800 5.0193 -0.0022 8 7 3.7576 5.6128 -1.3403 9 6 4.5520 4.8639 -2.3231 10 6 4.1408 7.0309 -1.3243 11 6 3.7733 7.6655 -2.6408 12 1 3.3017 7.0746 -3.4121 13 6 4.0389 9.0004 -2.8606 14 7 4.6127 9.7201 -1.9212 15 14 3.5827 9.7872 -4.4923 16 1 2.9535 8.7708 -5.3732 17 1 2.6262 10.8982 -4.2558 18 1 4.8064 10.3180 -5.1451 19 6 1.8773 3.5105 -0.0006 20 17 0.8728 4.9263 0.0000 21 7 1.3183 2.3141 -0.0001 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 4.0222 0.3690 -0.0005 26 1 5.1261 2.5936 -0.0114 27 1 4.9339 4.9365 0.2636 28 1 3.3709 5.6526 0.7242 29 1 5.6091 4.9374 -2.0677 30 1 4.2480 3.8171 -2.3143 31 1 4.3884 5.2814 -3.3166 32 1 3.6155 7.5401 -0.5164 33 1 5.2163 7.1149 -1.1681 34 1 4.7992 10.6593 -2.0757 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001237794120.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:35 Heat of formation + Delta-G solvation = -22.906101 kcal Electronic energy + Delta-G solvation = -18289.988154 eV Core-core repulsion = 15248.596777 eV Total energy + Delta-G solvation = -3041.391377 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.088 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.77861 -39.41163 -37.94176 -37.40692 -34.81770 -33.62697 -32.20325 -29.23743 -28.63479 -27.55298 -25.72947 -24.44521 -23.33365 -21.85743 -19.51725 -18.52187 -18.42448 -17.16480 -16.84442 -16.29838 -16.16553 -15.94833 -15.74868 -15.25191 -14.74955 -14.66064 -14.33110 -13.83379 -13.41194 -13.07674 -12.98083 -12.86344 -12.77249 -12.61362 -12.50328 -12.26362 -12.05736 -11.81494 -11.73517 -11.27927 -10.88002 -10.84345 -10.58216 -9.42527 -8.93300 -8.16906 -6.25305 -0.08862 0.13147 0.88037 1.41233 1.42775 1.55491 2.07611 2.41661 2.52949 3.16158 3.35741 3.48014 3.71024 3.90716 4.12519 4.23574 4.41673 4.44953 4.49467 4.54724 4.74313 4.74887 4.78313 4.86130 5.08225 5.15997 5.24127 5.27741 5.37131 5.69017 6.06809 6.09958 6.37365 6.55101 6.66134 6.90963 7.43866 8.94011 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.030815 B = 0.004594 C = 0.004405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.415578 B = 6094.057139 C = 6355.524100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.309 6.309 3 C 0.318 3.682 4 C -0.175 4.175 5 C -0.019 4.019 6 C -0.146 4.146 7 C 0.101 3.899 8 N -0.538 5.538 9 C 0.044 3.956 10 C 0.212 3.788 11 C -0.516 4.516 12 H 0.059 0.941 13 C 0.004 3.996 14 N -0.933 5.933 15 Si 0.963 3.037 16 H -0.266 1.266 17 H -0.281 1.281 18 H -0.278 1.278 19 C 0.215 3.785 20 Cl -0.028 7.028 21 N -0.556 5.556 22 H 0.051 0.949 23 H 0.129 0.871 24 H 0.054 0.946 25 H 0.180 0.820 26 H 0.180 0.820 27 H 0.053 0.947 28 H 0.072 0.928 29 H 0.020 0.980 30 H 0.067 0.933 31 H 0.053 0.947 32 H 0.005 0.995 33 H -0.031 1.031 34 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.116 -19.246 5.020 20.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.216 6.216 3 C 0.138 3.862 4 C -0.195 4.195 5 C -0.044 4.044 6 C -0.150 4.150 7 C -0.028 4.028 8 N -0.262 5.262 9 C -0.104 4.104 10 C 0.086 3.914 11 C -0.555 4.555 12 H 0.078 0.922 13 C -0.194 4.194 14 N -0.574 5.574 15 Si 0.788 3.212 16 H -0.190 1.190 17 H -0.207 1.207 18 H -0.204 1.204 19 C 0.052 3.948 20 Cl 0.001 6.999 21 N -0.283 5.283 22 H 0.069 0.931 23 H 0.147 0.853 24 H 0.073 0.927 25 H 0.197 0.803 26 H 0.197 0.803 27 H 0.071 0.929 28 H 0.090 0.910 29 H 0.039 0.961 30 H 0.086 0.914 31 H 0.072 0.928 32 H 0.023 0.977 33 H -0.014 1.014 34 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -4.460 -19.318 4.913 20.426 hybrid contribution 0.901 1.351 -0.393 1.671 sum -3.558 -17.967 4.521 18.866 Atomic orbital electron populations 1.23062 0.75936 1.04831 1.02040 1.86242 1.24220 1.23321 1.87796 1.19965 0.90095 0.83663 0.92460 1.21433 0.91124 1.00603 1.06389 1.21685 1.01890 0.89182 0.91673 1.20429 0.91822 0.97486 1.05301 1.20860 0.98695 0.91001 0.92201 1.61998 1.56034 1.03214 1.04970 1.22164 0.94350 0.97426 0.96499 1.19350 0.92041 0.83657 0.96363 1.21471 1.38510 0.94878 1.00618 0.92235 1.25810 0.95260 0.97850 1.00468 1.70078 1.44130 1.08145 1.35079 0.85430 0.77924 0.78293 0.79552 1.19026 1.20682 1.20351 1.21147 0.88882 0.87124 0.97607 1.98432 1.70291 1.35148 1.96063 1.66478 1.42298 0.98092 1.21400 0.93064 0.85310 0.92729 0.80253 0.80317 0.92862 0.90993 0.96150 0.91392 0.92832 0.97696 1.01384 0.92800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.63 10.38 113.37 1.18 1.81 16 2 O -0.31 -6.84 10.48 -89.94 -0.94 -7.78 16 3 C 0.32 8.04 7.49 84.78 0.63 8.68 16 4 C -0.18 -3.53 10.04 22.47 0.23 -3.30 16 5 C -0.02 -0.40 9.14 22.44 0.21 -0.20 16 6 C -0.15 -4.30 4.44 -19.74 -0.09 -4.38 16 7 C 0.10 3.45 4.44 85.56 0.38 3.82 16 8 N -0.54 -22.53 4.64 -931.64 -4.32 -26.86 16 9 C 0.04 1.63 9.17 127.69 1.17 2.80 16 10 C 0.21 11.04 4.72 85.56 0.40 11.44 16 11 C -0.52 -29.09 8.51 25.60 0.22 -28.87 16 12 H 0.06 3.34 7.10 -2.91 -0.02 3.32 16 13 C 0.00 0.23 5.46 84.65 0.46 0.69 16 14 N -0.93 -55.84 13.29 21.45 0.28 -55.56 16 15 Si 0.96 44.57 29.54 68.60 2.03 46.59 16 16 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 17 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 18 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 19 C 0.21 6.94 7.27 84.66 0.62 7.56 16 20 Cl -0.03 -0.99 27.70 -2.72 -0.08 -1.06 16 21 N -0.56 -16.76 9.19 -299.78 -2.76 -19.52 16 22 H 0.05 1.00 8.10 -2.39 -0.02 0.98 16 23 H 0.13 1.34 8.14 -2.39 -0.02 1.32 16 24 H 0.05 1.01 8.10 -2.39 -0.02 0.99 16 25 H 0.18 2.35 8.06 -2.91 -0.02 2.33 16 26 H 0.18 2.72 8.05 -2.91 -0.02 2.70 16 27 H 0.05 1.64 7.98 -2.39 -0.02 1.62 16 28 H 0.07 2.62 7.38 -2.39 -0.02 2.60 16 29 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.07 2.14 6.66 -2.38 -0.02 2.12 16 31 H 0.05 2.19 6.86 -2.39 -0.02 2.17 16 32 H 0.00 0.28 7.93 -2.39 -0.02 0.26 16 33 H -0.03 -1.75 8.12 -2.38 -0.02 -1.77 16 34 H 0.26 14.81 8.31 -92.71 -0.77 14.04 16 Total: -1.00 -66.55 306.14 0.72 -65.83 By element: Atomic # 1 Polarization: -2.79 SS G_CDS: 1.10 Total: -1.69 kcal Atomic # 6 Polarization: -5.36 SS G_CDS: 5.40 Total: 0.04 kcal Atomic # 7 Polarization: -95.14 SS G_CDS: -6.80 Total: -101.94 kcal Atomic # 8 Polarization: -6.84 SS G_CDS: -0.94 Total: -7.78 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.59 kcal Atomic # 17 Polarization: -0.99 SS G_CDS: -0.08 Total: -1.06 kcal Total: -66.55 0.72 -65.83 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237794120.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.927 kcal (2) G-P(sol) polarization free energy of solvation -66.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds