Wall clock time and date at job start Mon Mar 30 2020 01:27:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 C 1.76192 * 103.00116 * 2 1 4 4 C 1.39093 * 119.96248 * 180.02562 * 3 2 1 5 5 C 1.37827 * 120.03963 * 179.97438 * 4 3 2 6 6 C 1.39418 * 119.96152 * 359.97438 * 5 4 3 7 7 C 1.48346 * 120.04019 * 180.02562 * 6 5 4 8 8 C 1.39765 * 120.00460 * 359.97438 * 7 6 5 9 9 C 1.38376 * 120.37403 * 179.72128 * 8 7 6 10 10 C 1.37728 * 120.38785 * 0.24171 * 9 8 7 11 11 C 1.40766 * 119.98888 * 0.02562 * 10 9 8 12 12 C 1.41423 * 120.18139 * 179.97438 * 11 10 9 13 13 H 1.07994 * 120.00329 * 204.50217 * 12 11 10 14 14 C 1.39934 * 120.00062 * 24.50609 * 12 11 10 15 15 N 1.30832 * 119.99850 * 17.89595 * 14 12 11 16 16 Si 1.86800 * 119.99920 * 197.89422 * 14 12 11 17 17 H 1.48497 * 109.46849 * 60.00324 * 16 14 12 18 18 H 1.48501 * 109.46789 * 179.97438 * 16 14 12 19 19 H 1.48496 * 109.47218 * 299.99850 * 16 14 12 20 20 C 1.38762 * 120.00456 * 180.23979 * 7 6 5 21 21 C 1.39427 * 119.92216 * 0.27977 * 6 5 4 22 22 C 1.37829 * 119.95524 * 359.44417 * 21 6 5 23 23 H 1.08995 * 109.47199 * 299.99981 * 1 2 3 24 24 H 1.08997 * 109.47199 * 60.00192 * 1 2 3 25 25 H 1.09009 * 109.46954 * 179.97438 * 1 2 3 26 26 H 1.08000 * 119.97851 * 359.94871 * 4 3 2 27 27 H 1.07997 * 120.01783 * 180.02562 * 5 4 3 28 28 H 1.07997 * 119.80902 * 0.02562 * 8 7 6 29 29 H 1.08001 * 119.80388 * 180.25485 * 9 8 7 30 30 H 1.07996 * 120.00378 * 179.97438 * 10 9 8 31 31 H 0.97000 * 119.99764 * 180.02562 * 15 14 12 32 32 H 1.08004 * 120.18948 * 0.02562 * 20 7 6 33 33 H 1.07994 * 120.01973 * 179.72548 * 21 6 5 34 34 H 1.08005 * 119.97743 * 180.25328 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 3.5408 2.1225 -0.0005 5 6 3.8527 3.4650 -0.0011 6 6 2.8337 4.4166 -0.0016 7 6 3.1674 5.8620 -0.0028 8 6 4.5039 6.2708 -0.0028 9 6 4.8239 7.6170 -0.0096 10 6 3.8291 8.5695 -0.0115 11 6 2.4777 8.1756 -0.0059 12 6 1.4530 9.1502 -0.0073 13 1 0.4763 8.9075 0.3844 14 6 1.7045 10.4292 -0.5164 15 7 2.7357 10.6319 -1.2956 16 14 0.5679 11.8470 -0.0833 17 1 0.5589 12.0421 1.3887 18 1 1.0496 13.0868 -0.7436 19 1 -0.8076 11.5391 -0.5504 20 6 2.1526 6.8085 0.0017 21 6 1.5006 4.0081 0.0043 22 6 1.1925 2.6647 -0.0009 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0278 -0.0005 26 1 4.3299 1.3851 -0.0001 27 1 4.8858 3.7797 -0.0019 28 1 5.2914 5.5317 -0.0023 29 1 5.8598 7.9226 -0.0137 30 1 4.0859 9.6185 -0.0165 31 1 2.9103 11.5186 -1.6482 32 1 1.1187 6.4962 0.0065 33 1 0.7101 4.7438 0.0084 34 1 0.1599 2.3478 -0.0005 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239498065.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:33 Heat of formation + Delta-G solvation = 32.789551 kcal Electronic energy + Delta-G solvation = -16813.055256 eV Core-core repulsion = 14186.971993 eV Total energy + Delta-G solvation = -2626.083262 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.077 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.05085 -37.17031 -33.87253 -31.74975 -31.14021 -29.89408 -28.98733 -27.84058 -25.37844 -22.89567 -22.52250 -20.22180 -20.13581 -17.79894 -17.22188 -15.70824 -15.30284 -15.08355 -14.69527 -14.42881 -13.92686 -13.71433 -13.36773 -13.09362 -13.06843 -12.79423 -12.60797 -12.16253 -11.69893 -11.41316 -11.33043 -11.10894 -11.03131 -10.61795 -10.45928 -10.21156 -9.76383 -9.59555 -9.42811 -9.14307 -8.74057 -7.77540 -7.55084 -6.84179 -6.75737 -4.41989 1.25248 1.55412 1.66387 2.41879 2.76013 2.96054 3.03961 3.06269 3.18681 3.89431 4.13025 4.64392 4.90853 4.92377 5.03366 5.12248 5.40559 5.47874 5.64923 5.66438 5.73660 5.98918 6.11916 6.32988 6.39111 6.49025 6.58818 6.78923 6.85661 6.96927 7.12210 7.25401 7.31043 7.50624 7.78585 7.94901 7.99327 8.19988 8.55185 8.82594 8.88109 10.14322 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.032012 B = 0.003830 C = 0.003458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.458523 B = 7309.626144 C = 8095.631048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 S -0.139 6.139 3 C -0.105 4.105 4 C -0.097 4.097 5 C -0.106 4.106 6 C -0.008 4.008 7 C -0.044 4.044 8 C -0.219 4.219 9 C -0.108 4.108 10 C -0.154 4.154 11 C 0.107 3.893 12 C -0.466 4.466 13 H 0.077 0.923 14 C 0.077 3.923 15 N -0.794 5.794 16 Si 0.908 3.092 17 H -0.263 1.263 18 H -0.278 1.278 19 H -0.265 1.265 20 C -0.202 4.202 21 C -0.103 4.103 22 C -0.128 4.128 23 H 0.083 0.917 24 H 0.083 0.917 25 H 0.103 0.897 26 H 0.122 0.878 27 H 0.130 0.870 28 H 0.092 0.908 29 H 0.091 0.909 30 H 0.119 0.881 31 H 0.281 0.719 32 H 0.097 0.903 33 H 0.130 0.870 34 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.302 -12.516 1.757 12.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.309 4.309 2 S 0.102 5.898 3 C -0.217 4.217 4 C -0.120 4.120 5 C -0.125 4.125 6 C -0.010 4.010 7 C -0.044 4.044 8 C -0.239 4.239 9 C -0.126 4.126 10 C -0.173 4.173 11 C 0.105 3.895 12 C -0.495 4.495 13 H 0.096 0.904 14 C -0.141 4.141 15 N -0.420 5.420 16 Si 0.732 3.268 17 H -0.188 1.188 18 H -0.203 1.203 19 H -0.190 1.190 20 C -0.222 4.222 21 C -0.122 4.122 22 C -0.152 4.152 23 H 0.102 0.898 24 H 0.102 0.898 25 H 0.122 0.878 26 H 0.140 0.860 27 H 0.148 0.852 28 H 0.110 0.890 29 H 0.109 0.891 30 H 0.137 0.863 31 H 0.092 0.908 32 H 0.115 0.885 33 H 0.148 0.852 34 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -1.559 -13.388 1.602 13.574 hybrid contribution -1.309 1.843 0.032 2.261 sum -2.869 -11.545 1.635 12.008 Atomic orbital electron populations 1.23609 0.94980 1.06618 1.05686 1.85227 1.06323 1.04723 1.93563 1.21528 0.96727 0.95371 1.08063 1.20600 0.93908 0.95935 1.01532 1.21216 0.99658 0.91609 1.00041 1.19222 0.92509 0.93631 0.95668 1.18309 0.93989 0.89364 1.02759 1.20440 0.93976 0.95134 1.14311 1.20640 0.97581 0.93150 1.01275 1.21449 0.92404 0.98859 1.04594 1.17533 0.92852 0.91074 0.88086 1.19526 0.98546 0.95195 1.36251 0.90437 1.25891 0.95603 1.00091 0.92507 1.69811 1.26039 1.24054 1.22067 0.86370 0.80830 0.79583 0.79973 1.18799 1.20321 1.18999 1.21088 0.96353 0.92830 1.11905 1.21236 0.96636 0.94879 0.99482 1.21015 0.97672 0.93139 1.03331 0.89839 0.89831 0.87790 0.86000 0.85235 0.88955 0.89083 0.86288 0.90759 0.88502 0.85197 0.86336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.24 9.14 101.05 0.92 -0.31 16 2 S -0.14 -1.69 22.56 -107.50 -2.43 -4.12 16 3 C -0.10 -1.55 6.12 -38.95 -0.24 -1.79 16 4 C -0.10 -1.46 9.78 -39.41 -0.39 -1.85 16 5 C -0.11 -1.78 9.42 -39.29 -0.37 -2.15 16 6 C -0.01 -0.16 5.88 -104.85 -0.62 -0.77 16 7 C -0.04 -0.98 5.87 -104.97 -0.62 -1.59 16 8 C -0.22 -4.80 9.44 -38.96 -0.37 -5.17 16 9 C -0.11 -2.48 10.01 -39.72 -0.40 -2.88 16 10 C -0.15 -3.92 8.69 -38.81 -0.34 -4.26 16 11 C 0.11 2.79 5.57 -106.87 -0.60 2.20 16 12 C -0.47 -12.12 9.05 -37.74 -0.34 -12.46 16 13 H 0.08 1.93 7.91 -52.49 -0.41 1.51 16 14 C 0.08 1.90 5.14 -17.34 -0.09 1.81 16 15 N -0.79 -20.24 10.96 55.55 0.61 -19.63 16 16 Si 0.91 18.35 29.60 -169.99 -5.03 13.32 16 17 H -0.26 -5.29 7.11 56.52 0.40 -4.89 16 18 H -0.28 -5.48 7.11 56.52 0.40 -5.08 16 19 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 20 C -0.20 -4.85 9.17 -38.53 -0.35 -5.20 16 21 C -0.10 -1.78 9.41 -39.29 -0.37 -2.15 16 22 C -0.13 -1.92 9.35 -39.41 -0.37 -2.29 16 23 H 0.08 0.70 7.74 -51.93 -0.40 0.30 16 24 H 0.08 0.71 7.74 -51.93 -0.40 0.31 16 25 H 0.10 0.70 8.14 -51.92 -0.42 0.28 16 26 H 0.12 1.58 8.06 -52.49 -0.42 1.16 16 27 H 0.13 2.01 6.18 -52.49 -0.32 1.69 16 28 H 0.09 1.76 6.17 -52.49 -0.32 1.44 16 29 H 0.09 1.85 8.06 -52.49 -0.42 1.43 16 30 H 0.12 3.12 6.15 -52.49 -0.32 2.80 16 31 H 0.28 6.54 8.30 -40.82 -0.34 6.20 16 32 H 0.10 2.16 6.18 -52.48 -0.32 1.84 16 33 H 0.13 2.18 6.19 -52.49 -0.32 1.86 16 34 H 0.12 1.47 5.86 -52.48 -0.31 1.16 16 LS Contribution 299.13 15.07 4.51 4.51 Total: -1.00 -27.26 299.13 -10.41 -37.67 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: -3.55 Total: 7.12 kcal Atomic # 6 Polarization: -34.35 SS G_CDS: -4.52 Total: -38.87 kcal Atomic # 7 Polarization: -20.24 SS G_CDS: 0.61 Total: -19.63 kcal Atomic # 14 Polarization: 18.35 SS G_CDS: -5.03 Total: 13.32 kcal Atomic # 16 Polarization: -1.69 SS G_CDS: -2.43 Total: -4.12 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -27.26 -10.41 -37.67 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239498065.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.459 kcal (2) G-P(sol) polarization free energy of solvation -27.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.669 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds