Wall clock time and date at job start Mon Mar 30 2020 01:27:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 C 1.76192 * 103.00116 * 2 1 4 4 C 1.39093 * 119.96248 * 180.02562 * 3 2 1 5 5 C 1.37827 * 120.03963 * 179.97438 * 4 3 2 6 6 C 1.39418 * 119.96152 * 359.97438 * 5 4 3 7 7 C 1.48346 * 120.04019 * 180.02562 * 6 5 4 8 8 C 1.39765 * 120.00460 * 359.97438 * 7 6 5 9 9 C 1.38376 * 120.37403 * 179.72128 * 8 7 6 10 10 C 1.37728 * 120.38785 * 0.24171 * 9 8 7 11 11 C 1.40766 * 119.98888 * 0.02562 * 10 9 8 12 12 C 1.41423 * 120.18139 * 179.97438 * 11 10 9 13 13 H 1.07994 * 120.00329 * 204.50217 * 12 11 10 14 14 C 1.39934 * 120.00062 * 24.50609 * 12 11 10 15 15 N 1.30832 * 119.99850 * 17.89595 * 14 12 11 16 16 Si 1.86800 * 119.99920 * 197.89422 * 14 12 11 17 17 H 1.48497 * 109.46849 * 60.00324 * 16 14 12 18 18 H 1.48501 * 109.46789 * 179.97438 * 16 14 12 19 19 H 1.48496 * 109.47218 * 299.99850 * 16 14 12 20 20 C 1.38762 * 120.00456 * 180.23979 * 7 6 5 21 21 C 1.39427 * 119.92216 * 0.27977 * 6 5 4 22 22 C 1.37829 * 119.95524 * 359.44417 * 21 6 5 23 23 H 1.08995 * 109.47199 * 299.99981 * 1 2 3 24 24 H 1.08997 * 109.47199 * 60.00192 * 1 2 3 25 25 H 1.09009 * 109.46954 * 179.97438 * 1 2 3 26 26 H 1.08000 * 119.97851 * 359.94871 * 4 3 2 27 27 H 1.07997 * 120.01783 * 180.02562 * 5 4 3 28 28 H 1.07997 * 119.80902 * 0.02562 * 8 7 6 29 29 H 1.08001 * 119.80388 * 180.25485 * 9 8 7 30 30 H 1.07996 * 120.00378 * 179.97438 * 10 9 8 31 31 H 0.97000 * 119.99764 * 180.02562 * 15 14 12 32 32 H 1.08004 * 120.18948 * 0.02562 * 20 7 6 33 33 H 1.07994 * 120.01973 * 179.72548 * 21 6 5 34 34 H 1.08005 * 119.97743 * 180.25328 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 3.5408 2.1225 -0.0005 5 6 3.8527 3.4650 -0.0011 6 6 2.8337 4.4166 -0.0016 7 6 3.1674 5.8620 -0.0028 8 6 4.5039 6.2708 -0.0028 9 6 4.8239 7.6170 -0.0096 10 6 3.8291 8.5695 -0.0115 11 6 2.4777 8.1756 -0.0059 12 6 1.4530 9.1502 -0.0073 13 1 0.4763 8.9075 0.3844 14 6 1.7045 10.4292 -0.5164 15 7 2.7357 10.6319 -1.2956 16 14 0.5679 11.8470 -0.0833 17 1 0.5589 12.0421 1.3887 18 1 1.0496 13.0868 -0.7436 19 1 -0.8076 11.5391 -0.5504 20 6 2.1526 6.8085 0.0017 21 6 1.5006 4.0081 0.0043 22 6 1.1925 2.6647 -0.0009 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0278 -0.0005 26 1 4.3299 1.3851 -0.0001 27 1 4.8858 3.7797 -0.0019 28 1 5.2914 5.5317 -0.0023 29 1 5.8598 7.9226 -0.0137 30 1 4.0859 9.6185 -0.0165 31 1 2.9103 11.5186 -1.6482 32 1 1.1187 6.4962 0.0065 33 1 0.7101 4.7438 0.0084 34 1 0.1599 2.3478 -0.0005 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239498065.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:33 Heat of formation + Delta-G solvation = 21.605595 kcal Electronic energy + Delta-G solvation = -16813.540229 eV Core-core repulsion = 14186.971993 eV Total energy + Delta-G solvation = -2626.568235 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.077 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.45387 -38.83193 -35.66860 -33.26269 -32.44972 -31.61407 -29.92105 -29.28498 -27.22201 -24.37047 -23.91846 -21.89920 -21.77230 -19.27037 -18.67118 -17.33445 -16.76551 -16.61233 -16.11626 -15.64603 -15.08570 -14.84965 -14.74122 -14.70938 -14.41096 -14.10412 -14.01409 -13.42994 -13.31219 -13.02153 -12.88283 -12.64068 -12.49875 -12.24741 -11.99474 -11.55440 -11.24668 -11.15665 -11.11688 -10.80673 -9.97576 -9.43106 -9.21390 -8.65238 -8.10431 -6.36584 -0.13002 0.42079 0.60573 0.98473 1.27063 1.37822 1.48833 1.48993 1.55367 2.20234 2.61818 2.94160 3.76795 3.83290 3.94061 3.97174 4.27429 4.30113 4.35719 4.44406 4.50529 4.59951 4.82401 4.87375 4.95975 5.07097 5.08439 5.18790 5.25889 5.33286 5.37680 5.60938 5.71415 5.92089 6.00385 6.05861 6.17517 6.36690 6.66520 6.92319 6.99983 8.32780 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.032012 B = 0.003830 C = 0.003458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.458523 B = 7309.626144 C = 8095.631048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 S -0.138 6.138 3 C -0.102 4.102 4 C -0.101 4.101 5 C -0.103 4.103 6 C -0.046 4.046 7 C -0.039 4.039 8 C -0.223 4.223 9 C -0.110 4.110 10 C -0.186 4.186 11 C 0.078 3.922 12 C -0.504 4.504 13 H 0.075 0.925 14 C 0.036 3.964 15 N -0.827 5.827 16 Si 0.982 3.018 17 H -0.261 1.261 18 H -0.267 1.267 19 H -0.259 1.259 20 C -0.224 4.224 21 C -0.110 4.110 22 C -0.129 4.129 23 H 0.090 0.910 24 H 0.089 0.911 25 H 0.129 0.871 26 H 0.146 0.854 27 H 0.140 0.860 28 H 0.124 0.876 29 H 0.115 0.885 30 H 0.102 0.898 31 H 0.288 0.712 32 H 0.101 0.899 33 H 0.125 0.875 34 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.921 -14.780 1.938 15.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.307 4.307 2 S 0.103 5.897 3 C -0.214 4.214 4 C -0.124 4.124 5 C -0.122 4.122 6 C -0.048 4.048 7 C -0.039 4.039 8 C -0.242 4.242 9 C -0.128 4.128 10 C -0.206 4.206 11 C 0.076 3.924 12 C -0.533 4.533 13 H 0.094 0.906 14 C -0.178 4.178 15 N -0.453 5.453 16 Si 0.802 3.198 17 H -0.185 1.185 18 H -0.192 1.192 19 H -0.183 1.183 20 C -0.244 4.244 21 C -0.129 4.129 22 C -0.153 4.153 23 H 0.109 0.891 24 H 0.108 0.892 25 H 0.147 0.853 26 H 0.164 0.836 27 H 0.158 0.842 28 H 0.142 0.858 29 H 0.133 0.867 30 H 0.120 0.880 31 H 0.099 0.901 32 H 0.119 0.881 33 H 0.142 0.858 34 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -2.171 -15.684 1.782 15.933 hybrid contribution -1.125 2.212 -0.030 2.482 sum -3.296 -13.471 1.752 13.979 Atomic orbital electron populations 1.23782 0.91970 1.08548 1.06392 1.85299 1.09639 1.01876 1.92870 1.21913 0.96677 0.97329 1.05500 1.20887 0.94942 0.95663 1.00935 1.21339 0.99587 0.92043 0.99271 1.19156 0.94022 0.92179 0.99463 1.18658 0.93735 0.91138 1.00380 1.20825 0.94855 0.95309 1.13226 1.20940 0.98290 0.93415 1.00130 1.21406 0.93051 0.98661 1.07446 1.17894 0.93423 0.92249 0.88793 1.19794 0.98760 0.96744 1.38042 0.90636 1.26741 0.97200 1.02177 0.91716 1.69873 1.27636 1.24989 1.22759 0.85263 0.78704 0.76176 0.79635 1.18524 1.19150 1.18334 1.21253 0.97346 0.92655 1.13117 1.21306 0.95961 0.96099 0.99569 1.21263 0.99279 0.92077 1.02633 0.89091 0.89166 0.85281 0.83643 0.84248 0.85844 0.86675 0.87962 0.90109 0.88056 0.85766 0.83644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.89 9.14 113.37 1.04 -0.85 16 2 S -0.14 -2.89 22.56 -56.49 -1.27 -4.17 16 3 C -0.10 -2.74 6.12 22.68 0.14 -2.60 16 4 C -0.10 -2.80 9.78 22.38 0.22 -2.58 16 5 C -0.10 -3.29 9.42 22.46 0.21 -3.07 16 6 C -0.05 -1.73 5.88 -20.02 -0.12 -1.85 16 7 C -0.04 -1.75 5.87 -20.09 -0.12 -1.87 16 8 C -0.22 -9.72 9.44 22.67 0.21 -9.51 16 9 C -0.11 -5.12 10.01 22.18 0.22 -4.89 16 10 C -0.19 -9.95 8.69 22.77 0.20 -9.75 16 11 C 0.08 4.32 5.57 -21.32 -0.12 4.20 16 12 C -0.50 -27.54 9.05 23.47 0.21 -27.33 16 13 H 0.08 3.96 7.91 -2.91 -0.02 3.94 16 14 C 0.04 1.85 5.14 85.25 0.44 2.29 16 15 N -0.83 -43.69 10.96 21.82 0.24 -43.45 16 16 Si 0.98 38.38 29.60 68.60 2.03 40.41 16 17 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 18 H -0.27 -9.85 7.11 99.48 0.71 -9.15 16 19 H -0.26 -9.78 7.11 99.48 0.71 -9.07 16 20 C -0.22 -11.22 9.17 22.95 0.21 -11.01 16 21 C -0.11 -3.74 9.41 22.46 0.21 -3.53 16 22 C -0.13 -3.59 9.35 22.38 0.21 -3.38 16 23 H 0.09 1.17 7.74 -2.39 -0.02 1.15 16 24 H 0.09 1.17 7.74 -2.39 -0.02 1.15 16 25 H 0.13 1.17 8.14 -2.39 -0.02 1.15 16 26 H 0.15 3.30 8.06 -2.91 -0.02 3.28 16 27 H 0.14 4.03 6.18 -2.91 -0.02 4.02 16 28 H 0.12 4.51 6.17 -2.91 -0.02 4.49 16 29 H 0.12 4.66 8.06 -2.91 -0.02 4.64 16 30 H 0.10 5.69 6.15 -2.91 -0.02 5.67 16 31 H 0.29 13.77 8.30 -92.71 -0.77 13.00 16 32 H 0.10 4.78 6.18 -2.91 -0.02 4.76 16 33 H 0.12 4.26 6.19 -2.91 -0.02 4.24 16 34 H 0.15 3.15 5.86 -2.91 -0.02 3.14 16 Total: -1.00 -61.12 299.13 5.28 -55.84 By element: Atomic # 1 Polarization: 25.99 SS G_CDS: 1.12 Total: 27.11 kcal Atomic # 6 Polarization: -78.91 SS G_CDS: 3.17 Total: -75.74 kcal Atomic # 7 Polarization: -43.69 SS G_CDS: 0.24 Total: -43.45 kcal Atomic # 14 Polarization: 38.38 SS G_CDS: 2.03 Total: 40.41 kcal Atomic # 16 Polarization: -2.89 SS G_CDS: -1.27 Total: -4.17 kcal Total: -61.12 5.28 -55.84 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239498065.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.444 kcal (2) G-P(sol) polarization free energy of solvation -61.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.838 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds